A citation-based method for searching scientific literature

Zhen Shi, Kotaro Fujii, Kyle M Kovary, Naomi R Genuth, Hannes L Röst, Mary N Teruel, Maria Barna. Mol Cell 2017
Times Cited: 279







List of co-cited articles
1113 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning.
Nadya Kondrashov, Aya Pusic, Craig R Stumpf, Kunihiko Shimizu, Andrew C Hsieh, Junko Ishijima, Toshihiko Shiroishi, Maria Barna. Cell 2011
359
28


The Mammalian Ribo-interactome Reveals Ribosome Functional Diversity and Heterogeneity.
Deniz Simsek, Gerald C Tiu, Ryan A Flynn, Gun W Byeon, Kathrin Leppek, Adele F Xu, Howard Y Chang, Maria Barna. Cell 2017
192
22

RNA regulons in Hox 5' UTRs confer ribosome specificity to gene regulation.
Shifeng Xue, Siqi Tian, Kotaro Fujii, Wipapat Kladwang, Rhiju Das, Maria Barna. Nature 2015
186
21

Ribosomopathies: There's strength in numbers.
Eric W Mills, Rachel Green. Science 2017
201
18


Differential Stoichiometry among Core Ribosomal Proteins.
Nikolai Slavov, Stefan Semrau, Edoardo Airoldi, Bogdan Budnik, Alexander van Oudenaarden. Cell Rep 2015
108
17

Does functional specialization of ribosomes really exist?
Max B Ferretti, Katrin Karbstein. RNA 2019
49
30



Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis.
Rajiv K Khajuria, Mathias Munschauer, Jacob C Ulirsch, Claudia Fiorini, Leif S Ludwig, Sean K McFarland, Nour J Abdulhay, Harrison Specht, Hasmik Keshishian, D R Mani,[...]. Cell 2018
173
13

Functional specificity among ribosomal proteins regulates gene expression.
Suzanne Komili, Natalie G Farny, Frederick P Roth, Pamela A Silver. Cell 2007
246
13

Ribosome Stoichiometry: From Form to Function.
Edward Emmott, Marko Jovanovic, Nikolai Slavov. Trends Biochem Sci 2019
41
29

Rps26 directs mRNA-specific translation by recognition of Kozak sequence elements.
Max B Ferretti, Homa Ghalei, Ethan A Ward, Elizabeth L Potts, Katrin Karbstein. Nat Struct Mol Biol 2017
60
20

Ribosome assembly coming into focus.
Sebastian Klinge, John L Woolford. Nat Rev Mol Cell Biol 2019
170
11

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
752
11

Structures of the human and Drosophila 80S ribosome.
Andreas M Anger, Jean-Paul Armache, Otto Berninghausen, Michael Habeck, Marion Subklewe, Daniel N Wilson, Roland Beckmann. Nature 2013
338
11

Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function.
Katherine E Sloan, Ahmed S Warda, Sunny Sharma, Karl-Dieter Entian, Denis L J Lafontaine, Markus T Bohnsack. RNA Biol 2017
265
11

Variant ribosomal RNA alleles are conserved and exhibit tissue-specific expression.
Matthew M Parks, Chad M Kurylo, Randall A Dass, Linda Bojmar, David Lyden, C Theresa Vincent, Scott C Blanchard. Sci Adv 2018
97
10

Profiling of 2'-O-Me in human rRNA reveals a subset of fractionally modified positions and provides evidence for ribosome heterogeneity.
Nicolai Krogh, Martin D Jansson, Sophia J Häfner, Disa Tehler, Ulf Birkedal, Mikkel Christensen-Dalsgaard, Anders H Lund, Henrik Nielsen. Nucleic Acids Res 2016
132
10

Ribosome heterogeneity in stem cells and development.
Dan Li, Jianlong Wang. J Cell Biol 2020
23
43

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
9


Deregulation of ribosomal protein expression and translation promotes breast cancer metastasis.
Richard Y Ebright, Sooncheol Lee, Ben S Wittner, Kira L Niederhoffer, Benjamin T Nicholson, Aditya Bardia, Samuel Truesdell, Devon F Wiley, Benjamin Wesley, Selena Li,[...]. Science 2020
79
11

On-Site Ribosome Remodeling by Locally Synthesized Ribosomal Proteins in Axons.
Toshiaki Shigeoka, Max Koppers, Hovy Ho-Wai Wong, Julie Qiaojin Lin, Roberta Cagnetta, Asha Dwivedy, Janaina de Freitas Nascimento, Francesca W van Tartwijk, Florian Ströhl, Jean-Michel Cioni,[...]. Cell Rep 2019
50
18

The economics of ribosome biosynthesis in yeast.
J R Warner. Trends Biochem Sci 1999
9

A unifying model for mTORC1-mediated regulation of mRNA translation.
Carson C Thoreen, Lynne Chantranupong, Heather R Keys, Tim Wang, Nathanael S Gray, David M Sabatini. Nature 2012
907
9

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
9

Global quantification of mammalian gene expression control.
Björn Schwanhäusser, Dorothea Busse, Na Li, Gunnar Dittmar, Johannes Schuchhardt, Jana Wolf, Wei Chen, Matthias Selbach. Nature 2011
9

Ribosome biogenesis in cancer: new players and therapeutic avenues.
Joffrey Pelletier, George Thomas, Siniša Volarević. Nat Rev Cancer 2018
273
8

Phosphorylation of the Ribosomal Protein RPL12/uL11 Affects Translation during Mitosis.
Koshi Imami, Miha Milek, Boris Bogdanow, Tomoharu Yasuda, Nicolai Kastelic, Henrik Zauber, Yasushi Ishihama, Markus Landthaler, Matthias Selbach. Mol Cell 2018
41
19

Differential expression of duplicated ribosomal protein genes modifies ribosome composition in response to stress.
Mustafa Malik Ghulam, Mathieu Catala, Sherif Abou Elela. Nucleic Acids Res 2020
21
38

Structure of the human 80S ribosome.
Heena Khatter, Alexander G Myasnikov, S Kundhavai Natchiar, Bruno P Klaholz. Nature 2015
254
8

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
8


Eukaryotic Ribosome Assembly.
Jochen Baßler, Ed Hurt. Annu Rev Biochem 2019
126
8

Ribosomopathies: human disorders of ribosome dysfunction.
Anupama Narla, Benjamin L Ebert. Blood 2010
508
7

New frontiers in translational control of the cancer genome.
Morgan L Truitt, Davide Ruggero. Nat Rev Cancer 2016
186
7

Ribosomal proteins: functions beyond the ribosome.
Xiang Zhou, Wen-Juan Liao, Jun-Ming Liao, Peng Liao, Hua Lu. J Mol Cell Biol 2015
314
7


SUnSET, a nonradioactive method to monitor protein synthesis.
Enrico K Schmidt, Giovanna Clavarino, Maurizio Ceppi, Philippe Pierre. Nat Methods 2009
832
7


Heterogeneity of the translational machinery: Variations on a common theme.
Martina Sauert, Hannes Temmel, Isabella Moll. Biochimie 2015
55
12

The translational landscape of mTOR signalling steers cancer initiation and metastasis.
Andrew C Hsieh, Yi Liu, Merritt P Edlind, Nicholas T Ingolia, Matthew R Janes, Annie Sher, Evan Y Shi, Craig R Stumpf, Carly Christensen, Michael J Bonham,[...]. Nature 2012
834
7

The complexity of human ribosome biogenesis revealed by systematic nucleolar screening of Pre-rRNA processing factors.
Lionel Tafforeau, Christiane Zorbas, Jean-Louis Langhendries, Sahra-Taylor Mullineux, Vassiliki Stamatopoulou, Romain Mullier, Ludivine Wacheul, Denis L J Lafontaine. Mol Cell 2013
270
7

Trans-kingdom mimicry underlies ribosome customization by a poxvirus kinase.
Sujata Jha, Madeline G Rollins, Gabriele Fuchs, Dean J Procter, Elizabeth A Hall, Kira Cozzolino, Peter Sarnow, Jeffrey N Savas, Derek Walsh. Nature 2017
45
15

The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Yasset Perez-Riverol, Attila Csordas, Jingwen Bai, Manuel Bernal-Llinares, Suresh Hewapathirana, Deepti J Kundu, Avinash Inuganti, Johannes Griss, Gerhard Mayer, Martin Eisenacher,[...]. Nucleic Acids Res 2019
7

The ribosomal protein genes and Minute loci of Drosophila melanogaster.
Steven J Marygold, John Roote, Gunter Reuter, Andrew Lambertsson, Michael Ashburner, Gillian H Millburn, Paul M Harrison, Zhan Yu, Naoya Kenmochi, Thomas C Kaufman,[...]. Genome Biol 2007
236
7

The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome.
A Barakat, K Szick-Miranda, I F Chang, R Guyot, G Blanc, R Cooke, M Delseny, J Bailey-Serres. Plant Physiol 2001
206
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.