A citation-based method for searching scientific literature

Kensei Nishida, Yuki Kuwano, Tatsuya Nishikawa, Kiyoshi Masuda, Kazuhito Rokutan. Int J Mol Sci 2017
Times Cited: 26







List of co-cited articles
167 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A census of human RNA-binding proteins.
Stefanie Gerstberger, Markus Hafner, Thomas Tuschl. Nat Rev Genet 2014
807
42

The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Alexander G Baltz, Mathias Munschauer, Björn Schwanhäusser, Alexandra Vasile, Yasuhiro Murakawa, Markus Schueler, Noah Youngs, Duncan Penfold-Brown, Kevin Drew, Miha Milek,[...]. Mol Cell 2012
705
15


DNA damage sensing by the ATM and ATR kinases.
Alexandre Maréchal, Lee Zou. Cold Spring Harb Perspect Biol 2013
581
15

Post-transcriptional control of gene expression following stress: the role of RNA-binding proteins.
Robert Harvey, Veronica Dezi, Mariavittoria Pizzinga, Anne E Willis. Biochem Soc Trans 2017
34
15

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
417
11

A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability.
Renee D Paulsen, Deena V Soni, Roy Wollman, Angela T Hahn, Muh-Ching Yee, Anna Guan, Jayne A Hesley, Steven C Miller, Evan F Cromwell, David E Solow-Cordero,[...]. Mol Cell 2009
366
11

Pre-mRNA processing factors meet the DNA damage response.
Alessandra Montecucco, Giuseppe Biamonti. Front Genet 2013
43
11

R-loop-mediated genomic instability is caused by impairment of replication fork progression.
Wenjian Gan, Zhishuang Guan, Jie Liu, Ting Gui, Keng Shen, James L Manley, Xialu Li. Genes Dev 2011
237
11

Involvement of Matrin 3 and SFPQ/NONO in the DNA damage response.
Maayan Salton, Yaniv Lerenthal, Shih-Ya Wang, David J Chen, Yosef Shiloh. Cell Cycle 2010
132
11

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Alfredo Castello, Bernd Fischer, Katrin Eichelbaum, Rastislav Horos, Benedikt M Beckmann, Claudia Strein, Norman E Davey, David T Humphreys, Thomas Preiss, Lars M Steinmetz,[...]. Cell 2012
11

The structure, function and evolution of proteins that bind DNA and RNA.
William H Hudson, Eric A Ortlund. Nat Rev Mol Cell Biol 2014
150
11

Transcription and DNA Damage: Holding Hands or Crossing Swords?
Giuseppina D'Alessandro, Fabrizio d'Adda di Fagagna. J Mol Biol 2017
39
11

RNA m6A methylation regulates the ultraviolet-induced DNA damage response.
Yang Xiang, Benoit Laurent, Chih-Hung Hsu, Sigrid Nachtergaele, Zhike Lu, Wanqiang Sheng, Chuanyun Xu, Hao Chen, Jian Ouyang, Siqing Wang,[...]. Nature 2017
336
11

The C9ORF72 GGGGCC expansion forms RNA G-quadruplex inclusions and sequesters hnRNP H to disrupt splicing in ALS brains.
Erin G Conlon, Lei Lu, Aarti Sharma, Takashi Yamazaki, Timothy Tang, Neil A Shneider, James L Manley. Elife 2016
131
11

The multifaceted roles of PARP1 in DNA repair and chromatin remodelling.
Arnab Ray Chaudhuri, André Nussenzweig. Nat Rev Mol Cell Biol 2017
391
11

Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
11

RNA-Binding Proteins in Cancer: Old Players and New Actors.
Bruno Pereira, Marc Billaud, Raquel Almeida. Trends Cancer 2017
210
11

RNA-binding proteins and post-transcriptional gene regulation.
Tina Glisovic, Jennifer L Bachorik, Jeongsik Yong, Gideon Dreyfuss. FEBS Lett 2008
784
11

C9orf72 nucleotide repeat structures initiate molecular cascades of disease.
Aaron R Haeusler, Christopher J Donnelly, Goran Periz, Eric A J Simko, Patrick G Shaw, Min-Sik Kim, Nicholas J Maragakis, Juan C Troncoso, Akhilesh Pandey, Rita Sattler,[...]. Nature 2014
532
11

Expanded GGGGCC hexanucleotide repeat in noncoding region of C9ORF72 causes chromosome 9p-linked FTD and ALS.
Mariely DeJesus-Hernandez, Ian R Mackenzie, Bradley F Boeve, Adam L Boxer, Matt Baker, Nicola J Rutherford, Alexandra M Nicholson, NiCole A Finch, Heather Flynn, Jennifer Adamson,[...]. Neuron 2011
11

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
11


RNA-binding proteins, multifaceted translational regulators in cancer.
Laurence Wurth, Fátima Gebauer. Biochim Biophys Acta 2015
72
11


The rise of regulatory RNA.
Kevin V Morris, John S Mattick. Nat Rev Genet 2014
721
7

Comprehensive Identification of RNA-Binding Domains in Human Cells.
Alfredo Castello, Bernd Fischer, Christian K Frese, Rastislav Horos, Anne-Marie Alleaume, Sophia Foehr, Tomaz Curk, Jeroen Krijgsveld, Matthias W Hentze. Mol Cell 2016
242
7

Y-box protein-1 is actively secreted through a non-classical pathway and acts as an extracellular mitogen.
Björn C Frye, Sarah Halfter, Sonja Djudjaj, Philipp Muehlenberg, Susanne Weber, Ute Raffetseder, Abdelaziz En-Nia, Hanna Knott, Jens M Baron, Steven Dooley,[...]. EMBO Rep 2009
81
7

The RNA-Binding Protein SYNCRIP Is a Component of the Hepatocyte Exosomal Machinery Controlling MicroRNA Sorting.
Laura Santangelo, Giorgio Giurato, Carla Cicchini, Claudia Montaldo, Carmine Mancone, Roberta Tarallo, Cecilia Battistelli, Tonino Alonzi, Alessandro Weisz, Marco Tripodi. Cell Rep 2016
227
7

Proteomics. Tissue-based map of the human proteome.
Mathias Uhlén, Linn Fagerberg, Björn M Hallström, Cecilia Lindskog, Per Oksvold, Adil Mardinoglu, Åsa Sivertsson, Caroline Kampf, Evelina Sjöstedt, Anna Asplund,[...]. Science 2015
7

PRP19 transforms into a sensor of RPA-ssDNA after DNA damage and drives ATR activation via a ubiquitin-mediated circuitry.
Alexandre Maréchal, Ju-Mei Li, Xiao Ye Ji, Ching-Shyi Wu, Stephanie A Yazinski, Hai Dang Nguyen, Shizhou Liu, Amanda E Jiménez, Jianping Jin, Lee Zou. Mol Cell 2014
147
7

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.
Christine M Clemson, John N Hutchinson, Sergio A Sara, Alexander W Ensminger, Archa H Fox, Andrew Chess, Jeanne B Lawrence. Mol Cell 2009
858
7


Structure of the heterodimer of human NONO and paraspeckle protein component 1 and analysis of its role in subnuclear body formation.
Daniel M Passon, Mihwa Lee, Oliver Rackham, Will A Stanley, Agata Sadowska, Aleksandra Filipovska, Archa H Fox, Charles S Bond. Proc Natl Acad Sci U S A 2012
86
7

NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies.
Tetsuro Hirose, Giorgio Virnicchi, Akie Tanigawa, Takao Naganuma, Ruohan Li, Hiroshi Kimura, Takahide Yokoi, Shinichi Nakagawa, Marianne Bénard, Archa H Fox,[...]. Mol Biol Cell 2014
238
7

The splicing-factor related protein SFPQ/PSF interacts with RAD51D and is necessary for homology-directed repair and sister chromatid cohesion.
Changanamkandath Rajesh, Dustin K Baker, Andrew J Pierce, Douglas L Pittman. Nucleic Acids Res 2011
71
7


53BP1 nuclear bodies form around DNA lesions generated by mitotic transmission of chromosomes under replication stress.
Claudia Lukas, Velibor Savic, Simon Bekker-Jensen, Carsten Doil, Beate Neumann, Ronni Sølvhøj Pedersen, Merete Grøfte, Kok Lung Chan, Ian David Hickson, Jiri Bartek,[...]. Nat Cell Biol 2011
438
7


The RNA Response to DNA Damage.
Luciana E Giono, Nicolás Nieto Moreno, Adrián E Cambindo Botto, Gwendal Dujardin, Manuel J Muñoz, Alberto R Kornblihtt. J Mol Biol 2016
27
7

Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends.
Claus M Azzalin, Patrick Reichenbach, Lela Khoriauli, Elena Giulotto, Joachim Lingner. Science 2007
809
7

Dicer independent small RNAs associate with telomeric heterochromatin.
Fang Cao, Xiangzhi Li, Samantha Hiew, Hugh Brady, Yifan Liu, Yali Dou. RNA 2009
50
7

TERRA RNA Antagonizes ATRX and Protects Telomeres.
Hsueh-Ping Chu, Catherine Cifuentes-Rojas, Barry Kesner, Eric Aeby, Hun-Goo Lee, Chunyao Wei, Hyun Jung Oh, Myriam Boukhali, Wilhelm Haas, Jeannie T Lee. Cell 2017
99
7

Telomere functions grounding on TERRA firma.
Claus M Azzalin, Joachim Lingner. Trends Cell Biol 2015
111
7


R-loops induce repressive chromatin marks over mammalian gene terminators.
Konstantina Skourti-Stathaki, Kinga Kamieniarz-Gdula, Nicholas J Proudfoot. Nature 2014
196
7

Cellular senescence: when bad things happen to good cells.
Judith Campisi, Fabrizio d'Adda di Fagagna. Nat Rev Mol Cell Biol 2007
7

MicroRNAs in development and disease.
Danish Sayed, Maha Abdellatif. Physiol Rev 2011
720
7

Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
7

Serial interactome capture of the human cell nucleus.
Thomas Conrad, Anne-Susann Albrecht, Veronica Rodrigues de Melo Costa, Sascha Sauer, David Meierhofer, Ulf Andersson Ørom. Nat Commun 2016
69
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.