A citation-based method for searching scientific literature

Alexander V Misharin, Luisa Morales-Nebreda, Paul A Reyfman, Carla M Cuda, James M Walter, Alexandra C McQuattie-Pimentel, Ching-I Chen, Kishore R Anekalla, Nikita Joshi, Kinola J N Williams, Hiam Abdala-Valencia, Tyrone J Yacoub, Monica Chi, Stephen Chiu, Francisco J Gonzalez-Gonzalez, Khalilah Gates, Anna P Lam, Trevor T Nicholson, Philip J Homan, Saul Soberanes, Salina Dominguez, Vince K Morgan, Rana Saber, Alexander Shaffer, Monique Hinchcliff, Stacy A Marshall, Ankit Bharat, Sergejs Berdnikovs, Sangeeta M Bhorade, Elizabeth T Bartom, Richard I Morimoto, William E Balch, Jacob I Sznajder, Navdeep S Chandel, Gökhan M Mutlu, Manu Jain, Cara J Gottardi, Benjamin D Singer, Karen M Ridge, Neda Bagheri, Ali Shilatifard, G R Scott Budinger, Harris Perlman. J Exp Med 2017
Times Cited: 483







List of co-cited articles
779 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A spatially restricted fibrotic niche in pulmonary fibrosis is sustained by M-CSF/M-CSFR signalling in monocyte-derived alveolar macrophages.
Nikita Joshi, Satoshi Watanabe, Rohan Verma, Renea P Jablonski, Ching-I Chen, Paul Cheresh, Nikolay S Markov, Paul A Reyfman, Alexandra C McQuattie-Pimentel, Lango Sichizya,[...]. Eur Respir J 2020
98
23

Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis.
Paul A Reyfman, James M Walter, Nikita Joshi, Kishore R Anekalla, Alexandra C McQuattie-Pimentel, Stephen Chiu, Ramiro Fernandez, Mahzad Akbarpour, Ching-I Chen, Ziyou Ren,[...]. Am J Respir Crit Care Med 2019
514
23

Alveolar macrophages develop from fetal monocytes that differentiate into long-lived cells in the first week of life via GM-CSF.
Martin Guilliams, Ismé De Kleer, Sandrine Henri, Sijranke Post, Leen Vanhoutte, Sofie De Prijck, Kim Deswarte, Bernard Malissen, Hamida Hammad, Bart N Lambrecht. J Exp Med 2013
730
22

Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage.
Dvir Aran, Agnieszka P Looney, Leqian Liu, Esther Wu, Valerie Fong, Austin Hsu, Suzanna Chak, Ram P Naikawadi, Paul J Wolters, Adam R Abate,[...]. Nat Immunol 2019
965
21

Ly6Chi monocytes direct alternatively activated profibrotic macrophage regulation of lung fibrosis.
Michael A Gibbons, Alison C MacKinnon, Prakash Ramachandran, Kevin Dhaliwal, Rodger Duffin, Alexander T Phythian-Adams, Nico van Rooijen, Christopher Haslett, Sarah E Howie, A John Simpson,[...]. Am J Respir Crit Care Med 2011
301
17

The Cytokine TGF-β Promotes the Development and Homeostasis of Alveolar Macrophages.
Xueyang Yu, Anne Buttgereit, Iva Lelios, Sebastian G Utz, Dilay Cansever, Burkhard Becher, Melanie Greter. Immunity 2017
150
16

Gene-expression profiles and transcriptional regulatory pathways that underlie the identity and diversity of mouse tissue macrophages.
Emmanuel L Gautier, Tal Shay, Jennifer Miller, Melanie Greter, Claudia Jakubzick, Stoyan Ivanov, Julie Helft, Andrew Chow, Kutlu G Elpek, Simon Gordonov,[...]. Nat Immunol 2012
16

Two distinct interstitial macrophage populations coexist across tissues in specific subtissular niches.
Svetoslav Chakarov, Hwee Ying Lim, Leonard Tan, Sheau Yng Lim, Peter See, Josephine Lum, Xiao-Meng Zhang, Shihui Foo, Satoshi Nakamizo, Kaibo Duan,[...]. Science 2019
380
15

Tissue-resident macrophages self-maintain locally throughout adult life with minimal contribution from circulating monocytes.
Daigo Hashimoto, Andrew Chow, Clara Noizat, Pearline Teo, Mary Beth Beasley, Marylene Leboeuf, Christian D Becker, Peter See, Jeremy Price, Daniel Lucas,[...]. Immunity 2013
15

Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis.
Christina Morse, Tracy Tabib, John Sembrat, Kristina L Buschur, Humberto Trejo Bittar, Eleanor Valenzi, Yale Jiang, Daniel J Kass, Kevin Gibson, Wei Chen,[...]. Eur Respir J 2019
194
15

Pulmonary Macrophages: A New Therapeutic Pathway in Fibrosing Lung Disease?
Adam J Byrne, Toby M Maher, Clare M Lloyd. Trends Mol Med 2016
173
14

Macrophages in Tissue Repair, Regeneration, and Fibrosis.
Thomas A Wynn, Kevin M Vannella. Immunity 2016
14

Three Unique Interstitial Macrophages in the Murine Lung at Steady State.
Sophie L Gibbings, Stacey M Thomas, Shaikh M Atif, Alexandra L McCubbrey, A Nicole Desch, Thomas Danhorn, Sonia M Leach, Donna L Bratton, Peter M Henson, William J Janssen,[...]. Am J Respir Cell Mol Biol 2017
214
14

Influenza-induced monocyte-derived alveolar macrophages confer prolonged antibacterial protection.
Helena Aegerter, Justina Kulikauskaite, Stefania Crotta, Harshil Patel, Gavin Kelly, Edith M Hessel, Matthias Mack, Soren Beinke, Andreas Wack. Nat Immunol 2020
100
14

Induction of the nuclear receptor PPAR-γ by the cytokine GM-CSF is critical for the differentiation of fetal monocytes into alveolar macrophages.
Christoph Schneider, Samuel P Nobs, Michael Kurrer, Hubert Rehrauer, Christoph Thiele, Manfred Kopf. Nat Immunol 2014
320
13

Alveolar macrophages: plasticity in a tissue-specific context.
Tracy Hussell, Thomas J Bell. Nat Rev Immunol 2014
753
13

Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis.
Taylor S Adams, Jonas C Schupp, Sergio Poli, Ehab A Ayaub, Nir Neumark, Farida Ahangari, Sarah G Chu, Benjamin A Raby, Giuseppe DeIuliis, Michael Januszyk,[...]. Sci Adv 2020
302
13

Tissue-resident macrophages originate from yolk-sac-derived erythro-myeloid progenitors.
Elisa Gomez Perdiguero, Kay Klapproth, Christian Schulz, Katrin Busch, Emanuele Azzoni, Lucile Crozet, Hannah Garner, Celine Trouillet, Marella F de Bruijn, Frederic Geissmann,[...]. Nature 2015
12

Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19.
Mingfeng Liao, Yang Liu, Jing Yuan, Yanling Wen, Gang Xu, Juanjuan Zhao, Lin Cheng, Jinxiu Li, Xin Wang, Fuxiang Wang,[...]. Nat Med 2020
12

Deletion of c-FLIP from CD11bhi Macrophages Prevents Development of Bleomycin-induced Lung Fibrosis.
Alexandra L McCubbrey, Lea Barthel, Michael P Mohning, Elizabeth F Redente, Kara J Mould, Stacey M Thomas, Sonia M Leach, Thomas Danhorn, Sophie L Gibbings, Claudia V Jakubzick,[...]. Am J Respir Cell Mol Biol 2018
83
14

The lung microenvironment shapes a dysfunctional response of alveolar macrophages in aging.
Alexandra C McQuattie-Pimentel, Ziyou Ren, Nikita Joshi, Satoshi Watanabe, Thomas Stoeger, Monica Chi, Ziyan Lu, Lango Sichizya, Raul Piseaux Aillon, Ching-I Chen,[...]. J Clin Invest 2021
37
32

Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.
Yonit Lavin, Deborah Winter, Ronnie Blecher-Gonen, Eyal David, Hadas Keren-Shaul, Miriam Merad, Steffen Jung, Ido Amit. Cell 2014
11

A gammaherpesvirus provides protection against allergic asthma by inducing the replacement of resident alveolar macrophages with regulatory monocytes.
Bénédicte Machiels, Mickael Dourcy, Xue Xiao, Justine Javaux, Claire Mesnil, Catherine Sabatel, Daniel Desmecht, François Lallemand, Philippe Martinive, Hamida Hammad,[...]. Nat Immunol 2017
114
11

Macrophages: friend or foe in idiopathic pulmonary fibrosis?
Lei Zhang, Yi Wang, Guorao Wu, Weining Xiong, Weikuan Gu, Cong-Yi Wang. Respir Res 2018
130
10

Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis.
Arun C Habermann, Austin J Gutierrez, Linh T Bui, Stephanie L Yahn, Nichelle I Winters, Carla L Calvi, Lance Peter, Mei-I Chung, Chase J Taylor, Christopher Jetter,[...]. Sci Adv 2020
261
10

Yolk Sac Macrophages, Fetal Liver, and Adult Monocytes Can Colonize an Empty Niche and Develop into Functional Tissue-Resident Macrophages.
Lianne van de Laar, Wouter Saelens, Sofie De Prijck, Liesbet Martens, Charlotte L Scott, Gert Van Isterdael, Eik Hoffmann, Rudi Beyaert, Yvan Saeys, Bart N Lambrecht,[...]. Immunity 2016
353
10

Single cell RNA sequencing identifies unique inflammatory airspace macrophage subsets.
Kara J Mould, Nathan D Jackson, Peter M Henson, Max Seibold, William J Janssen. JCI Insight 2019
97
9

A phase 3 trial of pirfenidone in patients with idiopathic pulmonary fibrosis.
Talmadge E King, Williamson Z Bradford, Socorro Castro-Bernardini, Elizabeth A Fagan, Ian Glaspole, Marilyn K Glassberg, Eduard Gorina, Peter M Hopkins, David Kardatzke, Lisa Lancaster,[...]. N Engl J Med 2014
9

Efficacy and safety of nintedanib in idiopathic pulmonary fibrosis.
Luca Richeldi, Roland M du Bois, Ganesh Raghu, Arata Azuma, Kevin K Brown, Ulrich Costabel, Vincent Cottin, Kevin R Flaherty, David M Hansell, Yoshikazu Inoue,[...]. N Engl J Med 2014
9

Transcriptome analysis highlights the conserved difference between embryonic and postnatal-derived alveolar macrophages.
Sophie L Gibbings, Rajni Goyal, A Nicole Desch, Sonia M Leach, Miglena Prabagar, Shaikh M Atif, Donna L Bratton, William Janssen, Claudia V Jakubzick. Blood 2015
132
9

Flow cytometric analysis of macrophages and dendritic cell subsets in the mouse lung.
Alexander V Misharin, Luisa Morales-Nebreda, Gökhan M Mutlu, G R Scott Budinger, Harris Perlman. Am J Respir Cell Mol Biol 2013
521
9

Identification of a nerve-associated, lung-resident interstitial macrophage subset with distinct localization and immunoregulatory properties.
Basak B Ural, Stephen T Yeung, Payal Damani-Yokota, Joseph C Devlin, Maren de Vries, Paola Vera-Licona, Tasleem Samji, Catherine M Sawai, Geunhyo Jang, Oriana A Perez,[...]. Sci Immunol 2020
93
9

Origin and functions of tissue macrophages.
Slava Epelman, Kory J Lavine, Gwendalyn J Randolph. Immunity 2014
858
8

Increased monocyte count as a cellular biomarker for poor outcomes in fibrotic diseases: a retrospective, multicentre cohort study.
Madeleine K D Scott, Katie Quinn, Qin Li, Robert Carroll, Hayley Warsinske, Francesco Vallania, Shirley Chen, Mary A Carns, Kathleen Aren, Jiehuan Sun,[...]. Lancet Respir Med 2019
99
8

Macrophage Akt1 Kinase-Mediated Mitophagy Modulates Apoptosis Resistance and Pulmonary Fibrosis.
Jennifer L Larson-Casey, Jessy S Deshane, Alan J Ryan, Victor J Thannickal, A Brent Carter. Immunity 2016
202
8

C-Myb(+) erythro-myeloid progenitor-derived fetal monocytes give rise to adult tissue-resident macrophages.
Guillaume Hoeffel, Jinmiao Chen, Yonit Lavin, Donovan Low, Francisca F Almeida, Peter See, Anna E Beaudin, Josephine Lum, Ivy Low, E Camilla Forsberg,[...]. Immunity 2015
650
8

Developmental origin of lung macrophage diversity.
Serena Y S Tan, Mark A Krasnow. Development 2016
168
8

A vicious circle of alveolar macrophages and fibroblasts perpetuates pulmonary fibrosis via CCL18.
Antje Prasse, Dmitri V Pechkovsky, Galen B Toews, Wolfgang Jungraithmayr, Florian Kollert, Torsten Goldmann, Ekkehard Vollmer, Joachim Müller-Quernheim, Gernot Zissel. Am J Respir Crit Care Med 2006
315
8

Identification of an atypical monocyte and committed progenitor involved in fibrosis.
Takashi Satoh, Katsuhiro Nakagawa, Fuminori Sugihara, Ryusuke Kuwahara, Motooki Ashihara, Fumihiro Yamane, Yosuke Minowa, Kiyoharu Fukushima, Isao Ebina, Yoshichika Yoshioka,[...]. Nature 2017
184
8

Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis.
Maximilian Strunz, Lukas M Simon, Meshal Ansari, Jaymin J Kathiriya, Ilias Angelidis, Christoph H Mayr, George Tsidiridis, Marius Lange, Laura F Mattner, Min Yee,[...]. Nat Commun 2020
154
8

Human and Mouse Transcriptome Profiling Identifies Cross-Species Homology in Pulmonary and Lymph Node Mononuclear Phagocytes.
Sonia M Leach, Sophie L Gibbings, Anita D Tewari, Shaikh M Atif, Brian Vestal, Thomas Danhorn, William J Janssen, Tor D Wager, Claudia V Jakubzick. Cell Rep 2020
26
30

Non-classical tissue monocytes and two functionally distinct populations of interstitial macrophages populate the mouse lung.
Joey Schyns, Qiang Bai, Cecilia Ruscitti, Coraline Radermecker, Sebastiaan De Schepper, Svetoslav Chakarov, Frédéric Farnir, Dimitri Pirottin, Florent Ginhoux, Guy Boeckxstaens,[...]. Nat Commun 2019
97
8

Establishment and Maintenance of the Macrophage Niche.
Martin Guilliams, Guilhem R Thierry, Johnny Bonnardel, Marc Bajenoff. Immunity 2020
171
7

Macrophage activation and polarization: nomenclature and experimental guidelines.
Peter J Murray, Judith E Allen, Subhra K Biswas, Edward A Fisher, Derek W Gilroy, Sergij Goerdt, Siamon Gordon, John A Hamilton, Lionel B Ivashkiv, Toby Lawrence,[...]. Immunity 2014
7

Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia.
Rogan A Grant, Luisa Morales-Nebreda, Nikolay S Markov, Suchitra Swaminathan, Melissa Querrey, Estefany R Guzman, Darryl A Abbott, Helen K Donnelly, Alvaro Donayre, Isaac A Goldberg,[...]. Nature 2021
295
7

Sessile alveolar macrophages communicate with alveolar epithelium to modulate immunity.
Kristin Westphalen, Galina A Gusarova, Mohammad N Islam, Manikandan Subramanian, Taylor S Cohen, Alice S Prince, Jahar Bhattacharya. Nature 2014
264
7

Idiopathic pulmonary fibrosis.
Luca Richeldi, Harold R Collard, Mark G Jones. Lancet 2017
749
7

Fate mapping reveals origins and dynamics of monocytes and tissue macrophages under homeostasis.
Simon Yona, Ki-Wook Kim, Yochai Wolf, Alexander Mildner, Diana Varol, Michal Breker, Dalit Strauss-Ayali, Sergey Viukov, Martin Guilliams, Alexander Misharin,[...]. Immunity 2013
7

The heterogeneity of lung macrophages in the susceptibility to disease.
Luisa Morales-Nebreda, Alexander V Misharin, Harris Perlman, G R Scott Budinger. Eur Respir Rev 2015
83
8

Pulmonary macrophage transplantation therapy.
Takuji Suzuki, Paritha Arumugam, Takuro Sakagami, Nico Lachmann, Claudia Chalk, Anthony Sallese, Shuichi Abe, Cole Trapnell, Brenna Carey, Thomas Moritz,[...]. Nature 2014
196
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.