A citation-based method for searching scientific literature

Stephanie Patchett, Sharmishtha Musalgaonkar, Andrey G Malyutin, Arlen W Johnson. PLoS Genet 2017
Times Cited: 11







List of co-cited articles
132 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mechanism of eIF6 release from the nascent 60S ribosomal subunit.
Félix Weis, Emmanuel Giudice, Mark Churcher, Li Jin, Christine Hilcenko, Chi C Wong, David Traynor, Robert R Kay, Alan J Warren. Nat Struct Mol Biol 2015
105
63

Defining the pathway of cytoplasmic maturation of the 60S ribosomal subunit.
Kai-Yin Lo, Zhihua Li, Cyril Bussiere, Stefan Bresson, Edward M Marcotte, Arlen W Johnson. Mol Cell 2010
132
54


Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia.
Kim De Keersmaecker, Zeynep Kalender Atak, Ning Li, Carmen Vicente, Stephanie Patchett, Tiziana Girardi, Valentina Gianfelici, Ellen Geerdens, Emmanuelle Clappier, Michaël Porcu,[...]. Nat Genet 2013
266
45

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis.
Andrey G Malyutin, Sharmishtha Musalgaonkar, Stephanie Patchett, Joachim Frank, Arlen W Johnson. EMBO J 2017
44
45

The Shwachman-Bodian-Diamond syndrome protein mediates translational activation of ribosomes in yeast.
Tobias F Menne, Beatriz Goyenechea, Nuria Sánchez-Puig, Chi C Wong, Louise M Tonkin, Philip J Ancliff, Renée L Brost, Michael Costanzo, Charles Boone, Alan J Warren. Nat Genet 2007
225
45

Structural snapshot of cytoplasmic pre-60S ribosomal particles bound by Nmd3, Lsg1, Tif6 and Reh1.
Chengying Ma, Shan Wu, Ningning Li, Yan Chen, Kaige Yan, Zhifei Li, Lvqin Zheng, Jianlin Lei, John L Woolford, Ning Gao. Nat Struct Mol Biol 2017
50
45

Uncoupling of GTP hydrolysis from eIF6 release on the ribosome causes Shwachman-Diamond syndrome.
Andrew J Finch, Christine Hilcenko, Nicolas Basse, Lesley F Drynan, Beatriz Goyenechea, Tobias F Menne, Africa González Fernández, Paul Simpson, Clive S D'Santos, Mark J Arends,[...]. Genes Dev 2011
178
45

Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.
Lukas Kater, Matthias Thoms, Clara Barrio-Garcia, Jingdong Cheng, Sherif Ismail, Yasar Luqman Ahmed, Gert Bange, Dieter Kressler, Otto Berninghausen, Irmgard Sinning,[...]. Cell 2017
70
45

Rlp24 activates the AAA-ATPase Drg1 to initiate cytoplasmic pre-60S maturation.
Lisa Kappel, Mathias Loibl, Gertrude Zisser, Isabella Klein, Gernot Fruhmann, Christof Gruber, Stefan Unterweger, Gerald Rechberger, Brigitte Pertschy, Helmut Bergler. J Cell Biol 2012
42
36

Yvh1 is required for a late maturation step in the 60S biogenesis pathway.
Stefan Kemmler, Laura Occhipinti, Maria Veisu, Vikram Govind Panse. J Cell Biol 2009
80
36

Defining the order in which Nmd3p and Rpl10p load onto nascent 60S ribosomal subunits.
Matthew West, John B Hedges, Anthony Chen, Arlen W Johnson. Mol Cell Biol 2005
99
36


Mechanism of eIF6-mediated inhibition of ribosomal subunit joining.
Marco Gartmann, Michael Blau, Jean-Paul Armache, Thorsten Mielke, Maya Topf, Roland Beckmann. J Biol Chem 2010
79
36

Release of eIF6 (p27BBP) from the 60S subunit allows 80S ribosome assembly.
Marcello Ceci, Cristina Gaviraghi, Chiara Gorrini, Leonardo A Sala, Nina Offenhäuser, Pier Carlo Marchisio, Stefano Biffo. Nature 2003
299
36

A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
322
36

Mutations in SBDS are associated with Shwachman-Diamond syndrome.
Graeme R B Boocock, Jodi A Morrison, Maja Popovic, Nicole Richards, Lynda Ellis, Peter R Durie, Johanna M Rommens. Nat Genet 2003
467
36

Ribosome stalk assembly requires the dual-specificity phosphatase Yvh1 for the exchange of Mrt4 with P0.
Kai-Yin Lo, Zhihua Li, Feng Wang, Edward M Marcotte, Arlen W Johnson. J Cell Biol 2009
77
36

The nucle(ol)ar Tif6p and Efl1p are required for a late cytoplasmic step of ribosome synthesis.
B Senger, D L Lafontaine, J S Graindorge, O Gadal, A Camasses, A Sanni, J M Garnier, M Breitenbach, E Hurt, F Fasiolo. Mol Cell 2001
126
36

Mutational analysis of the ribosomal protein Rpl10 from yeast.
Anne Hofer, Cyril Bussiere, Arlen W Johnson. J Biol Chem 2007
30
36

Ribosome assembly coming into focus.
Sebastian Klinge, John L Woolford. Nat Rev Mol Cell Biol 2019
137
36

Cytoplasmic recycling of 60S preribosomal factors depends on the AAA protein Drg1.
Brigitte Pertschy, Cosmin Saveanu, Gertrude Zisser, Alice Lebreton, Martin Tengg, Alain Jacquier, Eva Liebminger, Berthold Nobis, Lisa Kappel, Ida van der Klei,[...]. Mol Cell Biol 2007
72
27

Architecture of the 90S Pre-ribosome: A Structural View on the Birth of the Eukaryotic Ribosome.
Markus Kornprobst, Martin Turk, Nikola Kellner, Jingdong Cheng, Dirk Flemming, Isabelle Koš-Braun, Martin Koš, Matthias Thoms, Otto Berninghausen, Roland Beckmann,[...]. Cell 2016
115
27


90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors.
Paola Grandi, Vladimir Rybin, Jochen Bassler, Elisabeth Petfalski, Daniela Strauss, Martina Marzioch, Thorsten Schäfer, Bernhard Kuster, Herbert Tschochner, David Tollervey,[...]. Mol Cell 2002
367
27

Arx1 functions as an unorthodox nuclear export receptor for the 60S preribosomal subunit.
Bettina Bradatsch, Jun Katahira, Eva Kowalinski, Gert Bange, Wei Yao, Toshihiro Sekimoto, Viola Baumgärtel, Guido Boese, Jochen Bassler, Klemens Wild,[...]. Mol Cell 2007
93
27

Molecular architecture of the 90S small subunit pre-ribosome.
Qi Sun, Xing Zhu, Jia Qi, Weidong An, Pengfei Lan, Dan Tan, Rongchang Chen, Bing Wang, Sanduo Zheng, Cheng Zhang,[...]. Elife 2017
85
27

Architecture of the yeast small subunit processome.
Malik Chaker-Margot, Jonas Barandun, Mirjam Hunziker, Sebastian Klinge. Science 2017
80
27

Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export.
Yoshitaka Matsuo, Sander Granneman, Matthias Thoms, Rizos-Georgios Manikas, David Tollervey, Ed Hurt. Nature 2014
90
27

Defective ribosome assembly in Shwachman-Diamond syndrome.
Chi C Wong, David Traynor, Nicolas Basse, Robert R Kay, Alan J Warren. Blood 2011
100
27

Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation.
Basil Johannes Greber, Stefan Gerhardy, Alexander Leitner, Marc Leibundgut, Michèle Salem, Daniel Boehringer, Nicolas Leulliot, Ruedi Aebersold, Vikram Govind Panse, Nenad Ban. Cell 2016
64
27

A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis.
François Dragon, Jennifer E G Gallagher, Patricia A Compagnone-Post, Brianna M Mitchell, Kara A Porwancher, Karen A Wehner, Steven Wormsley, Robert E Settlage, Jeffrey Shabanowitz, Yvonne Osheim,[...]. Nature 2002
517
27

Mutations in EFL1, an SBDS partner, are associated with infantile pancytopenia, exocrine pancreatic insufficiency and skeletal anomalies in aShwachman-Diamond like syndrome.
Polina Stepensky, Montserrat Chacón-Flores, Katherine H Kim, Omar Abuzaitoun, Arnulfo Bautista-Santos, Natalia Simanovsky, Dritan Siliqi, Davide Altamura, Alfonso Méndez-Godoy, Abril Gijsbers,[...]. J Med Genet 2017
59
27

The T-cell leukemia-associated ribosomal RPL10 R98S mutation enhances JAK-STAT signaling.
T Girardi, S Vereecke, S O Sulima, Y Khan, L Fancello, J W Briggs, C Schwab, J Op de Beeck, J Verbeeck, J Royaert,[...]. Leukemia 2018
36
27

Bypass of the pre-60S ribosomal quality control as a pathway to oncogenesis.
Sergey O Sulima, Stephanie Patchett, Vivek M Advani, Kim De Keersmaecker, Arlen W Johnson, Jonathan D Dinman. Proc Natl Acad Sci U S A 2014
51
27

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
27

Stage-specific assembly events of the 6-MDa small-subunit processome initiate eukaryotic ribosome biogenesis.
Malik Chaker-Margot, Mirjam Hunziker, Jonas Barandun, Brian D Dill, Sebastian Klinge. Nat Struct Mol Biol 2015
68
27

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
718
27

Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes.
Shan Wu, Beril Tutuncuoglu, Kaige Yan, Hailey Brown, Yixiao Zhang, Dan Tan, Michael Gamalinda, Yi Yuan, Zhifei Li, Jelena Jakovljevic,[...]. Nature 2016
112
27

60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle.
Christoph Leidig, Matthias Thoms, Iris Holdermann, Bettina Bradatsch, Otto Berninghausen, Gert Bange, Irmgard Sinning, Ed Hurt, Roland Beckmann. Nat Commun 2014
89
27

The drug diazaborine blocks ribosome biogenesis by inhibiting the AAA-ATPase Drg1.
Mathias Loibl, Isabella Klein, Michael Prattes, Claudia Schmidt, Lisa Kappel, Gertrude Zisser, Anna Gungl, Elmar Krieger, Brigitte Pertschy, Helmut Bergler. J Biol Chem 2014
30
27

Modular assembly of the nucleolar pre-60S ribosomal subunit.
Zahra Assur Sanghai, Linamarie Miller, Kelly R Molloy, Jonas Barandun, Mirjam Hunziker, Malik Chaker-Margot, Junjie Wang, Brian T Chait, Sebastian Klinge. Nature 2018
53
27

Integrity of the P-site is probed during maturation of the 60S ribosomal subunit.
Cyril Bussiere, Yaser Hashem, Sucheta Arora, Joachim Frank, Arlen W Johnson. J Cell Biol 2012
56
27

Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome.
Yi Zhou, Sharmishtha Musalgaonkar, Arlen W Johnson, David W Taylor. Nat Commun 2019
23
27

A functional network involved in the recycling of nucleocytoplasmic pre-60S factors.
Alice Lebreton, Cosmin Saveanu, Laurence Decourty, Jean-Christophe Rain, Alain Jacquier, Micheline Fromont-Racine. J Cell Biol 2006
85
18

RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components.
Jennifer E G Gallagher, David A Dunbar, Sander Granneman, Brianna M Mitchell, Yvonne Osheim, Ann L Beyer, Susan J Baserga. Genes Dev 2004
176
18

Cryo-EM structures of Arx1 and maturation factors Rei1 and Jjj1 bound to the 60S ribosomal subunit.
Basil J Greber, Daniel Boehringer, Christian Montellese, Nenad Ban. Nat Struct Mol Biol 2012
72
18

Mutations in the ribosomal protein gene RPL10 suggest a novel modulating disease mechanism for autism.
S M Klauck, B Felder, A Kolb-Kokocinski, C Schuster, A Chiocchetti, I Schupp, R Wellenreuther, G Schmötzer, F Poustka, L Breitenbach-Koller,[...]. Mol Psychiatry 2006
64
18

Germline mutation of RPS20, encoding a ribosomal protein, causes predisposition to hereditary nonpolyposis colorectal carcinoma without DNA mismatch repair deficiency.
Taina T Nieminen, Marie-Françoise O'Donohue, Yunpeng Wu, Hannes Lohi, Stephen W Scherer, Andrew D Paterson, Pekka Ellonen, Wael M Abdel-Rahman, Satu Valo, Jukka-Pekka Mecklin,[...]. Gastroenterology 2014
99
18

The Hsp40 chaperone Jjj1 is required for the nucleo-cytoplasmic recycling of preribosomal factors in Saccharomyces cerevisiae.
Emilie Demoinet, Alain Jacquier, Georges Lutfalla, Micheline Fromont-Racine. RNA 2007
44
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.