A citation-based method for searching scientific literature

Massa J Shoura, Idan Gabdank, Loren Hansen, Jason Merker, Jason Gotlib, Stephen D Levene, Andrew Z Fire. G3 (Bethesda) 2017
Times Cited: 43







List of co-cited articles
344 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Extrachromosomal microDNAs and chromosomal microdeletions in normal tissues.
Yoshiyuki Shibata, Pankaj Kumar, Ryan Layer, Smaranda Willcox, Jeffrey R Gagan, Jack D Griffith, Anindya Dutta. Science 2012
128
72

Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity.
Kristen M Turner, Viraj Deshpande, Doruk Beyter, Tomoyuki Koga, Jessica Rusert, Catherine Lee, Bin Li, Karen Arden, Bing Ren, David A Nathanson,[...]. Nature 2017
257
72

Extrachromosomal circular DNA is common in yeast.
Henrik D Møller, Lance Parsons, Tue S Jørgensen, David Botstein, Birgitte Regenberg. Proc Natl Acad Sci U S A 2015
105
69

Circular DNA elements of chromosomal origin are common in healthy human somatic tissue.
Henrik Devitt Møller, Marghoob Mohiyuddin, Iñigo Prada-Luengo, M Reza Sailani, Jens Frey Halling, Peter Plomgaard, Lasse Maretty, Anders Johannes Hansen, Michael P Snyder, Henriette Pilegaard,[...]. Nat Commun 2018
96
69

Normal and Cancerous Tissues Release Extrachromosomal Circular DNA (eccDNA) into the Circulation.
Pankaj Kumar, Laura W Dillon, Yoshiyuki Shibata, Amir A Jazaeri, David R Jones, Anindya Dutta. Mol Cancer Res 2017
85
53

Discoveries of Extrachromosomal Circles of DNA in Normal and Tumor Cells.
Teressa Paulsen, Pankaj Kumar, M Murat Koseoglu, Anindya Dutta. Trends Genet 2018
68
53

Targeted therapy resistance mediated by dynamic regulation of extrachromosomal mutant EGFR DNA.
David A Nathanson, Beatrice Gini, Jack Mottahedeh, Koppany Visnyei, Tomoyuki Koga, German Gomez, Ascia Eskin, Kiwook Hwang, Jun Wang, Kenta Masui,[...]. Science 2014
300
46

Production of Extrachromosomal MicroDNAs Is Linked to Mismatch Repair Pathways and Transcriptional Activity.
Laura W Dillon, Pankaj Kumar, Yoshiyuki Shibata, Yuh-Hwa Wang, Smaranda Willcox, Jack D Griffith, Yves Pommier, Shunichi Takeda, Anindya Dutta. Cell Rep 2015
67
39

Gene amplification as double minutes or homogeneously staining regions in solid tumors: origin and structure.
Clelia Tiziana Storlazzi, Angelo Lonoce, Maria C Guastadisegni, Domenico Trombetta, Pietro D'Addabbo, Giulia Daniele, Alberto L'Abbate, Gemma Macchia, Cecilia Surace, Klaas Kok,[...]. Genome Res 2010
119
39

Circular ecDNA promotes accessible chromatin and high oncogene expression.
Sihan Wu, Kristen M Turner, Nam Nguyen, Ramya Raviram, Marcella Erb, Jennifer Santini, Jens Luebeck, Utkrisht Rajkumar, Yarui Diao, Bin Li,[...]. Nature 2019
133
37

MINUTE CHROMATIN BODIES IN MALIGNANT TUMOURS OF CHILDHOOD.
D COX, C YUNCKEN, A I SPRIGGS. Lancet 1965
203
34

Discordant inheritance of chromosomal and extrachromosomal DNA elements contributes to dynamic disease evolution in glioblastoma.
Ana C deCarvalho, Hoon Kim, Laila M Poisson, Mary E Winn, Claudius Mueller, David Cherba, Julie Koeman, Sahil Seth, Alexei Protopopov, Michelle Felicella,[...]. Nat Genet 2018
113
34


Extrachromosomal circular DNA-based amplification and transmission of herbicide resistance in crop weed Amaranthus palmeri.
Dal-Hoe Koo, William T Molin, Christopher A Saski, Jiming Jiang, Karthik Putta, Mithila Jugulam, Bernd Friebe, Bikram S Gill. Proc Natl Acad Sci U S A 2018
75
32

Functional Enhancers Shape Extrachromosomal Oncogene Amplifications.
Andrew R Morton, Nergiz Dogan-Artun, Zachary J Faber, Graham MacLeod, Cynthia F Bartels, Megan S Piazza, Kevin C Allan, Stephen C Mack, Xiuxing Wang, Ryan C Gimple,[...]. Cell 2019
95
32

Extrachromosomal circular DNA of tandemly repeated genomic sequences in Drosophila.
Sarit Cohen, Keren Yacobi, Daniel Segal. Genome Res 2003
88
30


Molecular characterization of cell-free eccDNAs in human plasma.
Jing Zhu, Fan Zhang, Meijun Du, Peng Zhang, Songbin Fu, Liang Wang. Sci Rep 2017
48
27

Molecular structure of double-minute chromosomes bearing amplified copies of the epidermal growth factor receptor gene in gliomas.
Nicolas Vogt, Sandrine-Hélène Lefèvre, Françoise Apiou, Anne-Marie Dutrillaux, Andrej Cör, Pascal Leuraud, Marie-France Poupon, Bernard Dutrillaux, Michelle Debatisse, Bernard Malfoy. Proc Natl Acad Sci U S A 2004
105
27

Small extrachromosomal circular DNAs, microDNA, produce short regulatory RNAs that suppress gene expression independent of canonical promoters.
Teressa Paulsen, Yoshiyuki Shibata, Pankaj Kumar, Laura Dillon, Anindya Dutta. Nucleic Acids Res 2019
31
38

Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma.
Richard P Koche, Elias Rodriguez-Fos, Konstantin Helmsauer, Martin Burkert, Ian C MacArthur, Jesper Maag, Rocio Chamorro, Natalia Munoz-Perez, Montserrat Puiggròs, Heathcliff Dorado Garcia,[...]. Nat Genet 2020
81
27

Genome-wide Purification of Extrachromosomal Circular DNA from Eukaryotic Cells.
Henrik D Møller, Rasmus K Bojsen, Chris Tachibana, Lance Parsons, David Botstein, Birgitte Regenberg. J Vis Exp 2016
25
44

Formation of Extrachromosomal Circular DNA from Long Terminal Repeats of Retrotransposons in Saccharomyces cerevisiae.
Henrik D Møller, Camilla E Larsen, Lance Parsons, Anders Johannes Hansen, Birgitte Regenberg, Tobias Mourier. G3 (Bethesda) 2015
26
42

Novel role for non-homologous end joining in the formation of double minutes in methotrexate-resistant colon cancer cells.
Xiangning Meng, Xiuying Qi, Huanhuan Guo, Mengdi Cai, Chunxiang Li, Jing Zhu, Feng Chen, Huan Guo, Jie Li, Yuzhen Zhao,[...]. J Med Genet 2015
35
31

Double minute chromosomes can be produced from precursors derived from a chromosomal deletion.
S M Carroll, M L DeRose, P Gaudray, C M Moore, D R Needham-Vandevanter, D D Von Hoff, G M Wahl. Mol Cell Biol 1988
183
25

Extrachromosomal oncogene amplification in tumour pathogenesis and evolution.
Roel G W Verhaak, Vineet Bafna, Paul S Mischel. Nat Rev Cancer 2019
99
25

Transcription-induced formation of extrachromosomal DNA during yeast ageing.
Ryan M Hull, Michelle King, Grazia Pizza, Felix Krueger, Xabier Vergara, Jonathan Houseley. PLoS Biol 2019
36
30

Adaptation to diverse nitrogen-limited environments by deletion or extrachromosomal element formation of the GAP1 locus.
David Gresham, Renata Usaite, Susanne Manuela Germann, Michael Lisby, David Botstein, Birgitte Regenberg. Proc Natl Acad Sci U S A 2010
72
23

Extrachromosomal circles of satellite repeats and 5S ribosomal DNA in human cells.
Sarit Cohen, Neta Agmon, Olga Sobol, Daniel Segal. Mob DNA 2010
76
23






Extrachromosomal driver mutations in glioblastoma and low-grade glioma.
Sergey Nikolaev, Federico Santoni, Marco Garieri, Periklis Makrythanasis, Emilie Falconnet, Michel Guipponi, Anne Vannier, Ivan Radovanovic, Frederique Bena, Françoise Forestier,[...]. Nat Commun 2014
46
20

Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants.
Sophie Lanciano, Marie-Christine Carpentier, Christel Llauro, Edouard Jobet, Dagmara Robakowska-Hyzorek, Eric Lasserre, Alain Ghesquière, Olivier Panaud, Marie Mirouze. PLoS Genet 2017
58
20


Genomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in human cancer.
Alberto L'Abbate, Gemma Macchia, Pietro D'Addabbo, Angelo Lonoce, Doron Tolomeo, Domenico Trombetta, Klaas Kok, Christoph Bartenhagen, Christopher W Whelan, Orazio Palumbo,[...]. Nucleic Acids Res 2014
67
20

Genomic Copy-Number Loss Is Rescued by Self-Limiting Production of DNA Circles.
Andrés Mansisidor, Temistocles Molinar, Priyanka Srivastava, Demetri D Dartis, Adriana Pino Delgado, Hannah G Blitzblau, Hannah Klein, Andreas Hochwagen. Mol Cell 2018
30
30

Identification and characterization of extrachromosomal circular DNA in maternal plasma.
Sarah T K Sin, Peiyong Jiang, Jiaen Deng, Lu Ji, Suk Hang Cheng, Anindya Dutta, Tak Y Leung, K C Allen Chan, Rossa W K Chiu, Y M Dennis Lo. Proc Natl Acad Sci U S A 2020
40
22

Inhibiting homologous recombination decreases extrachromosomal amplification but has no effect on intrachromosomal amplification in methotrexate-resistant colon cancer cells.
Mengdi Cai, Huishu Zhang, Liqing Hou, Wei Gao, Ying Song, Xiaobo Cui, Chunxiang Li, Rongwei Guan, Jinfa Ma, Xu Wang,[...]. Int J Cancer 2019
27
33


Characterization of the microDNA through the response to chemotherapeutics in lymphoblastoid cell lines.
Pamela Mehanna, Vincent Gagné, Mathieu Lajoie, Jean-François Spinella, Pascal St-Onge, Daniel Sinnett, Ivan Brukner, Maja Krajinovic. PLoS One 2017
17
47

Massive genomic rearrangement acquired in a single catastrophic event during cancer development.
Philip J Stephens, Chris D Greenman, Beiyuan Fu, Fengtang Yang, Graham R Bignell, Laura J Mudie, Erin D Pleasance, King Wai Lau, David Beare, Lucy A Stebbings,[...]. Cell 2011
18


Frequency of double minute chromosomes and combined cytogenetic abnormalities and their characteristics.
Yihui Fan, Renfang Mao, Hongpei Lv, Jie Xu, Lei Yan, Yanhong Liu, Meng Shi, Guohua Ji, Yang Yu, Jing Bai,[...]. J Appl Genet 2011
32
25

Near-Random Distribution of Chromosome-Derived Circular DNA in the Condensed Genome of Pigeons and the Larger, More Repeat-Rich Human Genome.
Henrik Devitt Møller, Jazmín Ramos-Madrigal, Iñigo Prada-Luengo, M Thomas P Gilbert, Birgitte Regenberg. Genome Biol Evol 2020
19
42

Amplicon rearrangements during the extrachromosomal and intrachromosomal amplification process in a glioma.
Nicolas Vogt, Anne Gibaud, Frédéric Lemoine, Pierre de la Grange, Michelle Debatisse, Bernard Malfoy. Nucleic Acids Res 2014
30
23

Telomeric circles: universal players in telomere maintenance?
Lubomir Tomaska, Jozef Nosek, Juraj Kramara, Jack D Griffith. Nat Struct Mol Biol 2009
62
16

Small polydisperse circular DNA of HeLa cells.
C A Smith, J Vinograd. J Mol Biol 1972
128
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.