Junyue Cao, Jonathan S Packer, Vijay Ramani, Darren A Cusanovich, Chau Huynh, Riza Daza, Xiaojie Qiu, Choli Lee, Scott N Furlan, Frank J Steemers, Andrew Adey, Robert H Waterston, Cole Trapnell, Jay Shendure. Science 2017
Times Cited: 403
Times Cited: 403
Times Cited
Times Co-cited
Similarity
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
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Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
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Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding.
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Comprehensive Integration of Single-Cell Data.
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Massively parallel digital transcriptional profiling of single cells.
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Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
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The single-cell transcriptional landscape of mammalian organogenesis.
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mRNA-Seq whole-transcriptome analysis of a single cell.
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Simultaneous epitope and transcriptome measurement in single cells.
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Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
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Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing.
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Comparative Analysis of Single-Cell RNA Sequencing Methods.
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Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput.
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Joint profiling of chromatin accessibility and gene expression in thousands of single cells.
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Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.
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Mapping the Mouse Cell Atlas by Microwell-Seq.
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Current best practices in single-cell RNA-seq analysis: a tutorial.
Malte D Luecken, Fabian J Theis. Mol Syst Biol 2019
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Single-cell chromatin accessibility reveals principles of regulatory variation.
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Dimensionality reduction for visualizing single-cell data using UMAP.
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Smart-seq2 for sensitive full-length transcriptome profiling in single cells.
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Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity.
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Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.
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Quantitative single-cell RNA-seq with unique molecular identifiers.
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Full-length RNA-seq from single cells using Smart-seq2.
Simone Picelli, Omid R Faridani, Asa K Björklund, Gösta Winberg, Sven Sagasser, Rickard Sandberg. Nat Protoc 2014
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Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH.
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RNA velocity of single cells.
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CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq.
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Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq.
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Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
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The Human Cell Atlas.
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Sequencing thousands of single-cell genomes with combinatorial indexing.
Sarah A Vitak, Kristof A Torkenczy, Jimi L Rosenkrantz, Andrew J Fields, Lena Christiansen, Melissa H Wong, Lucia Carbone, Frank J Steemers, Andrew Adey. Nat Methods 2017
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RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
Kok Hao Chen, Alistair N Boettiger, Jeffrey R Moffitt, Siyuan Wang, Xiaowei Zhuang. Science 2015
Kok Hao Chen, Alistair N Boettiger, Jeffrey R Moffitt, Siyuan Wang, Xiaowei Zhuang. Science 2015
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Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics.
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Marlon Stoeckius, Shiwei Zheng, Brian Houck-Loomis, Stephanie Hao, Bertrand Z Yeung, William M Mauck, Peter Smibert, Rahul Satija. Genome Biol 2018
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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
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STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
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Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution.
Samuel G Rodriques, Robert R Stickels, Aleksandrina Goeva, Carly A Martin, Evan Murray, Charles R Vanderburg, Joshua Welch, Linlin M Chen, Fei Chen, Evan Z Macosko. Science 2019
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CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification.
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Single-cell RNA counting at allele and isoform resolution using Smart-seq3.
Michael Hagemann-Jensen, Christoph Ziegenhain, Ping Chen, Daniel Ramsköld, Gert-Jan Hendriks, Anton J M Larsson, Omid R Faridani, Rickard Sandberg. Nat Biotechnol 2020
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Massively parallel single-nucleus RNA-seq with DroNc-seq.
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Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
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Spatial reconstruction of single-cell gene expression data.
Rahul Satija, Jeffrey A Farrell, David Gennert, Alexander F Schier, Aviv Regev. Nat Biotechnol 2015
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A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.
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Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors.
Laleh Haghverdi, Aaron T L Lun, Michael D Morgan, John C Marioni. Nat Biotechnol 2018
Laleh Haghverdi, Aaron T L Lun, Michael D Morgan, John C Marioni. Nat Biotechnol 2018
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Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq.
Diego Adhemar Jaitin, Assaf Weiner, Ido Yofe, David Lara-Astiaso, Hadas Keren-Shaul, Eyal David, Tomer Meir Salame, Amos Tanay, Alexander van Oudenaarden, Ido Amit. Cell 2016
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Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens.
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Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics.
Mireya Plass, Jordi Solana, F Alexander Wolf, Salah Ayoub, Aristotelis Misios, Petar Glažar, Benedikt Obermayer, Fabian J Theis, Christine Kocks, Nikolaus Rajewsky. Science 2018
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Massively multiplex single-cell Hi-C.
Vijay Ramani, Xinxian Deng, Ruolan Qiu, Kevin L Gunderson, Frank J Steemers, Christine M Disteche, William S Noble, Zhijun Duan, Jay Shendure. Nat Methods 2017
Vijay Ramani, Xinxian Deng, Ruolan Qiu, Kevin L Gunderson, Frank J Steemers, Christine M Disteche, William S Noble, Zhijun Duan, Jay Shendure. Nat Methods 2017
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Cell type transcriptome atlas for the planarian Schmidtea mediterranea.
Christopher T Fincher, Omri Wurtzel, Thom de Hoog, Kellie M Kravarik, Peter W Reddien. Science 2018
Christopher T Fincher, Omri Wurtzel, Thom de Hoog, Kellie M Kravarik, Peter W Reddien. Science 2018
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High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell.
Song Chen, Blue B Lake, Kun Zhang. Nat Biotechnol 2019
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A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution.
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12
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.