A citation-based method for searching scientific literature

Benoit Labonté, Olivia Engmann, Immanuel Purushothaman, Caroline Menard, Junshi Wang, Chunfeng Tan, Joseph R Scarpa, Gregory Moy, Yong-Hwee E Loh, Michael Cahill, Zachary S Lorsch, Peter J Hamilton, Erin S Calipari, Georgia E Hodes, Orna Issler, Hope Kronman, Madeline Pfau, Aleksandar L J Obradovic, Yan Dong, Rachael L Neve, Scott Russo, Andrew Kazarskis, Carol Tamminga, Naguib Mechawar, Gustavo Turecki, Bin Zhang, Li Shen, Eric J Nestler. Nat Med 2017
Times Cited: 241







List of co-cited articles
1018 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Opposite Molecular Signatures of Depression in Men and Women.
Marianne L Seney, Zhiguang Huo, Kelly Cahill, Leon French, Rachel Puralewski, Joyce Zhang, Ryan W Logan, George Tseng, David A Lewis, Etienne Sibille. Biol Psychiatry 2018
87
35

Sex Differences in Nucleus Accumbens Transcriptome Profiles Associated with Susceptibility versus Resilience to Subchronic Variable Stress.
Georgia E Hodes, Madeline L Pfau, Immanuel Purushothaman, H Francisca Ahn, Sam A Golden, Daniel J Christoffel, Jane Magida, Anna Brancato, Aki Takahashi, Meghan E Flanigan,[...]. J Neurosci 2015
178
22

Circuit-wide Transcriptional Profiling Reveals Brain Region-Specific Gene Networks Regulating Depression Susceptibility.
Rosemary C Bagot, Hannah M Cates, Immanuel Purushothaman, Zachary S Lorsch, Deena M Walker, Junshi Wang, Xiaojie Huang, Oliver M Schlüter, Ian Maze, Catherine J Peña,[...]. Neuron 2016
133
16

Molecular adaptations underlying susceptibility and resistance to social defeat in brain reward regions.
Vaishnav Krishnan, Ming-Hu Han, Danielle L Graham, Olivier Berton, William Renthal, Scott J Russo, Quincey Laplant, Ami Graham, Michael Lutter, Diane C Lagace,[...]. Cell 2007
16

Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.
Naomi R Wray, Stephan Ripke, Manuel Mattheisen, Maciej Trzaskowski, Enda M Byrne, Abdel Abdellaoui, Mark J Adams, Esben Agerbo, Tracy M Air, Till M F Andlauer,[...]. Nat Genet 2018
847
12

Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.
David M Howard, Mark J Adams, Toni-Kim Clarke, Jonathan D Hafferty, Jude Gibson, Masoud Shirali, Jonathan R I Coleman, Saskia P Hagenaars, Joey Ward, Eleanor M Wigmore,[...]. Nat Neurosci 2019
361
12

Decreased expression of synapse-related genes and loss of synapses in major depressive disorder.
Hyo Jung Kang, Bhavya Voleti, Tibor Hajszan, Grazyna Rajkowska, Craig A Stockmeier, Pawel Licznerski, Ashley Lepack, Mahesh S Majik, Lak Shin Jeong, Mounira Banasr,[...]. Nat Med 2012
376
11

Gender differences in chronic major and double depression.
S G Kornstein, A F Schatzberg, M E Thase, K A Yonkers, J P McCullough, G I Keitner, A J Gelenberg, C E Ryan, A L Hess, W Harrison,[...]. J Affect Disord 2000
263
10

Global brain gene expression analysis links glutamatergic and GABAergic alterations to suicide and major depression.
Adolfo Sequeira, Firoza Mamdani, Carl Ernst, Marquis P Vawter, William E Bunney, Veronique Lebel, Sonia Rehal, Tim Klempan, Alain Gratton, Chawki Benkelfat,[...]. PLoS One 2009
234
9


Rank-rank hypergeometric overlap: identification of statistically significant overlap between gene-expression signatures.
Seema B Plaisier, Richard Taschereau, Justin A Wong, Thomas G Graeber. Nucleic Acids Res 2010
167
9

A standardized protocol for repeated social defeat stress in mice.
Sam A Golden, Herbert E Covington, Olivier Berton, Scott J Russo. Nat Protoc 2011
623
9

Essential role of BDNF in the mesolimbic dopamine pathway in social defeat stress.
Olivier Berton, Colleen A McClung, Ralph J Dileone, Vaishnav Krishnan, William Renthal, Scott J Russo, Danielle Graham, Nadia M Tsankova, Carlos A Bolanos, Maribel Rios,[...]. Science 2006
9

Shared Transcriptional Signatures in Major Depressive Disorder and Mouse Chronic Stress Models.
Joseph R Scarpa, Mena Fatma, Yong-Hwee E Loh, Said Romaric Traore, Theo Stefan, Ting Huei Chen, Eric J Nestler, Benoit Labonté. Biol Psychiatry 2020
21
42

Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap.
Michael J Gandal, Jillian R Haney, Neelroop N Parikshak, Virpi Leppa, Gokul Ramaswami, Chris Hartl, Andrew J Schork, Vivek Appadurai, Alfonso Buil, Thomas M Werge,[...]. Science 2018
398
8

Prevalence, severity, and comorbidity of 12-month DSM-IV disorders in the National Comorbidity Survey Replication.
Ronald C Kessler, Wai Tat Chiu, Olga Demler, Kathleen R Merikangas, Ellen E Walters. Arch Gen Psychiatry 2005
8

Stress, depression, and neuroplasticity: a convergence of mechanisms.
Christopher Pittenger, Ronald S Duman. Neuropsychopharmacology 2008
8

Stress Effects on Neuronal Structure: Hippocampus, Amygdala, and Prefrontal Cortex.
Bruce S McEwen, Carla Nasca, Jason D Gray. Neuropsychopharmacology 2016
481
8

Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons.
Corina Nagy, Malosree Maitra, Arnaud Tanti, Matthew Suderman, Jean-Francois Théroux, Maria Antonietta Davoli, Kelly Perlman, Volodymyr Yerko, Yu Chang Wang, Shreejoy J Tripathy,[...]. Nat Neurosci 2020
38
21

A negative regulator of MAP kinase causes depressive behavior.
Vanja Duric, Mounira Banasr, Pawel Licznerski, Heath D Schmidt, Craig A Stockmeier, Arthur A Simen, Samuel S Newton, Ronald S Duman. Nat Med 2010
276
7


Cocaine Self-administration Alters Transcriptome-wide Responses in the Brain's Reward Circuitry.
Deena M Walker, Hannah M Cates, Yong-Hwee E Loh, Immanuel Purushothaman, Aarthi Ramakrishnan, Kelly M Cahill, Casey K Lardner, Arthur Godino, Hope G Kronman, Jacqui Rabkin,[...]. Biol Psychiatry 2018
56
12

Widespread sex differences in gene expression and splicing in the adult human brain.
Daniah Trabzuni, Adaikalavan Ramasamy, Sabaena Imran, Robert Walker, Colin Smith, Michael E Weale, John Hardy, Mina Ryten. Nat Commun 2013
136
7

Gender differences in treatment response to sertraline versus imipramine in chronic depression.
S G Kornstein, A F Schatzberg, M E Thase, K A Yonkers, J P McCullough, G I Keitner, A J Gelenberg, S M Davis, W M Harrison, M B Keller. Am J Psychiatry 2000
425
7

Major depressive disorder.
Christian Otte, Stefan M Gold, Brenda W Penninx, Carmine M Pariante, Amit Etkin, Maurizio Fava, David C Mohr, Alan F Schatzberg. Nat Rev Dis Primers 2016
412
7

Early life stress alters transcriptomic patterning across reward circuitry in male and female mice.
Catherine Jensen Peña, Milo Smith, Aarthi Ramakrishnan, Hannah M Cates, Rosemary C Bagot, Hope G Kronman, Bhakti Patel, Austin B Chang, Immanuel Purushothaman, Joel Dudley,[...]. Nat Commun 2019
30
23

Sex differences in antidepressant response in recent antidepressant clinical trials.
Arif Khan, Amy E Brodhead, Kelly A Schwartz, Russell L Kolts, Walter A Brown. J Clin Psychopharmacol 2005
135
7

Animal models of neuropsychiatric disorders.
Eric J Nestler, Steven E Hyman. Nat Neurosci 2010
7

Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.
David M Howard, Mark J Adams, Masoud Shirali, Toni-Kim Clarke, Riccardo E Marioni, Gail Davies, Jonathan R I Coleman, Clara Alloza, Xueyi Shen, Miruna C Barbu,[...]. Nat Commun 2018
144
7

Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.
Craig L Hyde, Michael W Nagle, Chao Tian, Xing Chen, Sara A Paciga, Jens R Wendland, Joyce Y Tung, David A Hinds, Roy H Perlis, Ashley R Winslow. Nat Genet 2016
313
7

Sex-Specific Role for the Long Non-coding RNA LINC00473 in Depression.
Orna Issler, Yentl Y van der Zee, Aarthi Ramakrishnan, Junshi Wang, Chunfeng Tan, Yong-Hwee E Loh, Immanuel Purushothaman, Deena M Walker, Zachary S Lorsch, Peter J Hamilton,[...]. Neuron 2020
19
36

Antidepressant effect of optogenetic stimulation of the medial prefrontal cortex.
Herbert E Covington, Mary Kay Lobo, Ian Maze, Vincent Vialou, James M Hyman, Samir Zaman, Quincey LaPlant, Ezekiel Mouzon, Subroto Ghose, Carol A Tamminga,[...]. J Neurosci 2010
366
6


Association of a History of Child Abuse With Impaired Myelination in the Anterior Cingulate Cortex: Convergent Epigenetic, Transcriptional, and Morphological Evidence.
Pierre-Eric Lutz, Arnaud Tanti, Alicja Gasecka, Sarah Barnett-Burns, John J Kim, Yi Zhou, Gang G Chen, Marina Wakid, Meghan Shaw, Daniel Almeida,[...]. Am J Psychiatry 2017
63
9

Burden of depressive disorders by country, sex, age, and year: findings from the global burden of disease study 2010.
Alize J Ferrari, Fiona J Charlson, Rosana E Norman, Scott B Patten, Greg Freedman, Christopher J L Murray, Theo Vos, Harvey A Whiteford. PLoS Med 2013
6

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
6

Rapid regulation of depression-related behaviours by control of midbrain dopamine neurons.
Dipesh Chaudhury, Jessica J Walsh, Allyson K Friedman, Barbara Juarez, Stacy M Ku, Ja Wook Koo, Deveroux Ferguson, Hsing-Chen Tsai, Lisa Pomeranz, Daniel J Christoffel,[...]. Nature 2013
569
6

A general framework for weighted gene co-expression network analysis.
Bin Zhang, Steve Horvath. Stat Appl Genet Mol Biol 2005
6

Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis.
Andrew E Jaffe, Richard E Straub, Joo Heon Shin, Ran Tao, Yuan Gao, Leonardo Collado-Torres, Tony Kam-Thong, Hualin S Xi, Jie Quan, Qiang Chen,[...]. Nat Neurosci 2018
121
6

Establishment of a repeated social defeat stress model in female mice.
Aki Takahashi, Jia-Ru Chung, Song Zhang, Hongxing Zhang, Yael Grossman, Hossein Aleyasin, Meghan E Flanigan, Madeline L Pfau, Caroline Menard, Dani Dumitriu,[...]. Sci Rep 2017
80
7

WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
6

Ventral hippocampal afferents to the nucleus accumbens regulate susceptibility to depression.
Rosemary C Bagot, Eric M Parise, Catherine J Peña, Hong-Xing Zhang, Ian Maze, Dipesh Chaudhury, Brianna Persaud, Roger Cachope, Carlos A Bolaños-Guzmán, Joseph F Cheer,[...]. Nat Commun 2015
207
6

Brain feminization requires active repression of masculinization via DNA methylation.
Bridget M Nugent, Christopher L Wright, Amol C Shetty, Georgia E Hodes, Kathryn M Lenz, Anup Mahurkar, Scott J Russo, Scott E Devine, Margaret M McCarthy. Nat Neurosci 2015
209
5


Sex bias in neuroscience and biomedical research.
Annaliese K Beery, Irving Zucker. Neurosci Biobehav Rev 2011
675
5

Impaired adult myelination in the prefrontal cortex of socially isolated mice.
Jia Liu, Karen Dietz, Jacqueline M DeLoyht, Xiomara Pedre, Dipti Kelkar, Jasbir Kaur, Vincent Vialou, Mary Kay Lobo, David M Dietz, Eric J Nestler,[...]. Nat Neurosci 2012
367
5

Altered expression of synapse and glutamate related genes in post-mortem hippocampus of depressed subjects.
Vanja Duric, Mounira Banasr, Craig A Stockmeier, Arthur A Simen, Samuel S Newton, James C Overholser, George J Jurjus, Lesa Dieter, Ronald S Duman. Int J Neuropsychopharmacol 2013
157
5

Uncovering the Genetic Architecture of Major Depression.
Andrew M McIntosh, Patrick F Sullivan, Cathryn M Lewis. Neuron 2019
44
11

Bidirectional Control of Anxiety-Related Behaviors in Mice: Role of Inputs Arising from the Ventral Hippocampus to the Lateral Septum and Medial Prefrontal Cortex.
Gustavo Morrone Parfitt, Robin Nguyen, Jee Yoon Bang, Afif J Aqrabawi, Matthew M Tran, D Kanghoon Seo, Blake A Richards, Jun Chul Kim. Neuropsychopharmacology 2017
66
7



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.