A citation-based method for searching scientific literature

Ming Chen, Andrew Harrison, Hugh Shanahan, Yuriy Orlov. J Integr Bioinform 2017
Times Cited: 6







List of co-cited articles
13 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Computational models in genetics at BGRS\SB-2016: introductory note.
Yuriy L Orlov, Ancha V Baranova, Arcady L Markel. BMC Genet 2016
28
50

Bioinformatics research at BGRS \ SB-2018.
Yuriy L Orlov, Ralf Hofestädt, Tatiana V Tatarinova. J Bioinform Comput Biol 2019
8
50

Plant biology research at BGRS-2018.
Yuriy L Orlov, Elena A Salina, Gilda Eslami, Alex V Kochetov. BMC Plant Biol 2019
7
50

[Reconstruction of gene network associated with Parkinson disease for gene targets search].
Y L Orlov, A G Galieva, N G Orlova, E N Ivanova, Y A Mozyleva, A A Anashkina. Biomed Khim 2021
8
50

Medical Genetics, Genomics and Bioinformatics Aid in Understanding Molecular Mechanisms of Human Diseases.
Yuriy L Orlov, Anastasia A Anashkina, Vadim V Klimontov, Ancha V Baranova. Int J Mol Sci 2021
8
50

Introductory note for BGRS\SB-2014 special issue.
Yuriy L Orlov, Ralf M Hofestädt, Nikolay A Kolchanov. J Bioinform Comput Biol 2015
17
33

Medical genomics research at BGRS-2018.
Ancha V Baranova, Vadim V Klimontov, Andrey Y Letyagin, Yuriy L Orlov. BMC Med Genomics 2019
11
33

Bioinformatics research at BGRS-2018.
Tatiana V Tatarinova, Ming Chen, Yuriy L Orlov. BMC Bioinformatics 2019
15
33

Non-linear regression models for time to flowering in wild chickpea combine genetic and climatic factors.
Konstantin Kozlov, Anupam Singh, Jens Berger, Eric Bishop-von Wettberg, Abdullah Kahraman, Abdulkadir Aydogan, Douglas Cook, Sergey Nuzhdin, Maria Samsonova. BMC Plant Biol 2019
6
33


Editorial: Bioinformatics of Genome Regulation and Systems Biology.
Yuriy L Orlov, Ancha V Baranova. Front Genet 2020
16
33

Analysis of differential gene expression by RNA-seq data in brain areas of laboratory animals.
Vladimir N Babenko, Anatoly O Bragin, Anastasia M Spitsina, Irina V Chadaeva, Elvira R Galieva, Galina V Orlova, Irina V Medvedeva, Yuriy L Orlov. J Integr Bioinform 2016
4
50

Immunohistochemistry and Mutation Analysis of SDHx Genes in Carotid Paragangliomas.
Anastasiya V Snezhkina, Dmitry V Kalinin, Vladislav S Pavlov, Elena N Lukyanova, Alexander L Golovyuk, Maria S Fedorova, Elena A Pudova, Maria V Savvateeva, Oleg A Stepanov, Andrey A Poloznikov,[...]. Int J Mol Sci 2020
6
33

Riboswitch finder--a tool for identification of riboswitch RNAs.
Peter Bengert, Thomas Dandekar. Nucleic Acids Res 2004
48
16

Prediction and classification of ncRNAs using structural information.
Bharat Panwar, Amit Arora, Gajendra P S Raghava. BMC Genomics 2014
52
16

The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches.
Zasha Weinberg, Elizabeth E Regulski, Ming C Hammond, Jeffrey E Barrick, Zizhen Yao, Walter L Ruzzo, Ronald R Breaker. RNA 2008
76
16

A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism.
Elizabeth E Regulski, Ryan H Moy, Zasha Weinberg, Jeffrey E Barrick, Zizhen Yao, Walter L Ruzzo, Ronald R Breaker. Mol Microbiol 2008
100
16

A naïve Bayesian classifier for identifying plant microRNAs.
Stephen Douglass, Ssu-Wei Hsu, Shawn Cokus, Robert B Goldberg, John J Harada, Matteo Pellegrini. Plant J 2016
7
16

Assessing the Performances of Protein Function Prediction Algorithms from the Perspectives of Identification Accuracy and False Discovery Rate.
Chun Yan Yu, Xiao Xu Li, Hong Yang, Ying Hong Li, Wei Wei Xue, Yu Zong Chen, Lin Tao, Feng Zhu. Int J Mol Sci 2018
23
16

Gene regulation by riboswitches.
Maumita Mandal, Ronald R Breaker. Nat Rev Mol Cell Biol 2004
544
16

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.
Lei Kong, Yong Zhang, Zhi-Qiang Ye, Xiao-Qiao Liu, Shu-Qi Zhao, Liping Wei, Ge Gao. Nucleic Acids Res 2007
16

How to apply de Bruijn graphs to genome assembly.
Phillip E C Compeau, Pavel A Pevzner, Glenn Tesler. Nat Biotechnol 2011
208
16

Redundant contribution of a Transient Receptor Potential cation channel Member 1 exon 11 single nucleotide polymorphism to equine congenital stationary night blindness.
Michelle L Scott, Emily E John, Rebecca R Bellone, John C H Ching, Matthew E Loewen, Lynne S Sandmeyer, Bruce H Grahn, George W Forsyth. BMC Vet Res 2016
1
100


Structural basis of ligand binding by a c-di-GMP riboswitch.
Kathryn D Smith, Sarah V Lipchock, Tyler D Ames, Jimin Wang, Ronald R Breaker, Scott A Strobel. Nat Struct Mol Biol 2009
210
16


A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction.
Shutao Mei, Fuyi Li, André Leier, Tatiana T Marquez-Lago, Kailin Giam, Nathan P Croft, Tatsuya Akutsu, A Ian Smith, Jian Li, Jamie Rossjohn,[...]. Brief Bioinform 2020
40
16

Fizzy: feature subset selection for metagenomics.
Gregory Ditzler, J Calvin Morrison, Yemin Lan, Gail L Rosen. BMC Bioinformatics 2015
15
16

Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria.
Maumita Mandal, Benjamin Boese, Jeffrey E Barrick, Wade C Winkler, Ronald R Breaker. Cell 2003
504
16

Structure and mechanism of a metal-sensing regulatory RNA.
Charles E Dann, Catherine A Wakeman, Cecelia L Sieling, Stephanie C Baker, Irnov Irnov, Wade C Winkler. Cell 2007
255
16

Computational challenges of sequence classification in microbiomic data.
Paolo Ribeca, Gabriel Valiente. Brief Bioinform 2011
7
16


Versatile interactions and bioinformatics analysis of noncoding RNAs.
Qi Chen, Xianwen Meng, Qi Liao, Ming Chen. Brief Bioinform 2019
9
16

Control of gene expression by a natural metabolite-responsive ribozyme.
Wade C Winkler, Ali Nahvi, Adam Roth, Jennifer A Collins, Ronald R Breaker. Nature 2004
603
16

Comprehensive assessment and performance improvement of effector protein predictors for bacterial secretion systems III, IV and VI.
Yi An, Jiawei Wang, Chen Li, André Leier, Tatiana Marquez-Lago, Jonathan Wilksch, Yang Zhang, Geoffrey I Webb, Jiangning Song, Trevor Lithgow. Brief Bioinform 2018
39
16


A decade of riboswitches.
Alexander Serganov, Evgeny Nudler. Cell 2013
613
16

SubMito-XGBoost: predicting protein submitochondrial localization by fusing multiple feature information and eXtreme gradient boosting.
Bin Yu, Wenying Qiu, Cheng Chen, Anjun Ma, Jing Jiang, Hongyan Zhou, Qin Ma. Bioinformatics 2020
42
16

iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.
Zhen Chen, Pei Zhao, Fuyi Li, Tatiana T Marquez-Lago, André Leier, Jerico Revote, Yan Zhu, David R Powell, Tatsuya Akutsu, Geoffrey I Webb,[...]. Brief Bioinform 2020
106
16

Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria.
Michelle M Meyer, Adam Roth, Stephanie M Chervin, George A Garcia, Ronald R Breaker. RNA 2008
77
16


An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs.
Tzu-Hao Chang, Hsi-Yuan Huang, Justin Bo-Kai Hsu, Shun-Long Weng, Jorng-Tzong Horng, Hsien-Da Huang. BMC Bioinformatics 2013
220
16


An mRNA structure that controls gene expression by binding FMN.
Wade C Winkler, Smadar Cohen-Chalamish, Ronald R Breaker. Proc Natl Acad Sci U S A 2002
433
16


A new approach for detecting riboswitches in DNA sequences.
Jessen T Havill, Chinmoy Bhatiya, Steven M Johnson, Joseph D Sheets, Jeffrey S Thompson. Bioinformatics 2014
20
16

Protein functional annotation of simultaneously improved stability, accuracy and false discovery rate achieved by a sequence-based deep learning.
Jiajun Hong, Yongchao Luo, Yang Zhang, Junbiao Ying, Weiwei Xue, Tian Xie, Lin Tao, Feng Zhu. Brief Bioinform 2020
44
16



Chemical basis of glycine riboswitch cooperativity.
Miyun Kwon, Scott A Strobel. RNA 2008
59
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.