A citation-based method for searching scientific literature

Tabish Hussain, Dhurjhoti Saha, Gunjan Purohit, Anirban Kar, Anand Kishore Mukherjee, Shalu Sharma, Suman Sengupta, Parashar Dhapola, Basudeb Maji, Sreekanth Vedagopuram, Nobuko T Horikoshi, Nobuo Horikoshi, Raj K Pandita, Santanu Bhattacharya, Avinash Bajaj, Jean-François Riou, Tej K Pandita, Shantanu Chowdhury. Sci Rep 2017
Times Cited: 33







List of co-cited articles
477 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Epigenetic suppression of human telomerase (hTERT) is mediated by the metastasis suppressor NME2 in a G-quadruplex-dependent fashion.
Dhurjhoti Saha, Ankita Singh, Tabish Hussain, Vivek Srivastava, Suman Sengupta, Anirban Kar, Parashar Dhapola, Vishnu Dhople, Ramesh Ummanni, Shantanu Chowdhury. J Biol Chem 2017
34
45

The human TTAGGG repeat factors 1 and 2 bind to a subset of interstitial telomeric sequences and satellite repeats.
Thomas Simonet, Laure-Emmanuelle Zaragosi, Claude Philippe, Kevin Lebrigand, Clémentine Schouteden, Adeline Augereau, Serge Bauwens, Jing Ye, Marco Santagostino, Elena Giulotto,[...]. Cell Res 2011
97
33

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
30

The Telomeric Protein TRF2 Regulates Angiogenesis by Binding and Activating the PDGFRβ Promoter.
Mounir El Maï, Kay-Dietrich Wagner, Jean-François Michiels, Damien Ambrosetti, Arnaud Borderie, Sandrine Destree, Valerie Renault, Nadir Djerbi, Marie-Josèphe Giraud-Panis, Eric Gilson,[...]. Cell Rep 2014
52
27

Human telomeric proteins occupy selective interstitial sites.
Dong Yang, Yuanyan Xiong, Hyeung Kim, Quanyuan He, Yumei Li, Rui Chen, Zhou Songyang. Cell Res 2011
96
27

Local epigenetic reprogramming induced by G-quadruplex ligands.
Guillaume Guilbaud, Pierre Murat, Bénédicte Recolin, Beth C Campbell, Ahmed Maiter, Julian E Sale, Shankar Balasubramanian. Nat Chem 2017
58
27

Telomere length-dependent transcription and epigenetic modifications in promoters remote from telomere ends.
Ananda Kishore Mukherjee, Shalu Sharma, Suman Sengupta, Dhurjhoti Saha, Pankaj Kumar, Tabish Hussain, Vivek Srivastava, Sumitabho Deb Roy, Jerry W Shay, Shantanu Chowdhury. PLoS Genet 2018
28
32

DNA G-quadruplexes show strong interaction with DNA methyltransferases in vitro.
Simone L Cree, Rayleen Fredericks, Allison Miller, F Grant Pearce, Vyacheslav Filichev, Conan Fee, Martin A Kennedy. FEBS Lett 2016
21
42

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.
Pooja Rawal, Veera Bhadra Rao Kummarasetti, Jinoy Ravindran, Nirmal Kumar, Kangkan Halder, Rakesh Sharma, Mitali Mukerji, Swapan Kumar Das, Shantanu Chowdhury. Genome Res 2006
233
27

Regulation of the Human Telomerase Gene TERT by Telomere Position Effect-Over Long Distances (TPE-OLD): Implications for Aging and Cancer.
Wanil Kim, Andrew T Ludlow, Jaewon Min, Jerome D Robin, Guido Stadler, Ilgen Mender, Tsung-Po Lai, Ning Zhang, Woodring E Wright, Jerry W Shay. PLoS Biol 2016
93
24

Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo.
Katrin Paeschke, Tomas Simonsson, Jan Postberg, Daniela Rhodes, Hans Joachim Lipps. Nat Struct Mol Biol 2005
411
24

Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species.
Anjali Verma, Kangkan Halder, Rashi Halder, Vinod Kumar Yadav, Pooja Rawal, Ram Krishna Thakur, Farhan Mohd, Abhay Sharma, Shantanu Chowdhury. J Med Chem 2008
149
24

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
24

DNA G-quadruplex structures mold the DNA methylome.
Shi-Qing Mao, Avazeh T Ghanbarian, Jochen Spiegel, Sergio Martínez Cuesta, Dario Beraldi, Marco Di Antonio, Giovanni Marsico, Robert Hänsel-Hertsch, David Tannahill, Shankar Balasubramanian. Nat Struct Mol Biol 2018
94
24

Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression.
Ram Krishna Thakur, Praveen Kumar, Kangkan Halder, Anjali Verma, Anirban Kar, Jean-Luc Parent, Richa Basundra, Akinchan Kumar, Shantanu Chowdhury. Nucleic Acids Res 2009
127
24

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
24


QuadBase: genome-wide database of G4 DNA--occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes.
Vinod Kumar Yadav, James Kappukalayil Abraham, Prithvi Mani, Rashi Kulshrestha, Shantanu Chowdhury. Nucleic Acids Res 2008
101
21

TRF2 protects human telomeres from end-to-end fusions.
B van Steensel, A Smogorzewska, T de Lange. Cell 1998
21

TRF2 inhibits a cell-extrinsic pathway through which natural killer cells eliminate cancer cells.
Annamaria Biroccio, Julien Cherfils-Vicini, Adeline Augereau, Sébastien Pinte, Serge Bauwens, Jing Ye, Thomas Simonet, Béatrice Horard, Karine Jamet, Ludovic Cervera,[...]. Nat Cell Biol 2013
83
21

Extratelomeric Binding of the Telomere Binding Protein TRF2 at the PCGF3 Promoter Is G-Quadruplex Motif-Dependent.
Gunjan Purohit, Ananda Kishor Mukherjee, Shalu Sharma, Shantanu Chowdhury. Biochemistry 2018
9
77


Determinants of G quadruplex-induced epigenetic instability in REV1-deficient cells.
Davide Schiavone, Guillaume Guilbaud, Pierre Murat, Charikleia Papadopoulou, Peter Sarkies, Marie-Noëlle Prioleau, Shankar Balasubramanian, Julian E Sale. EMBO J 2014
84
21

Epigenetic instability due to defective replication of structured DNA.
Peter Sarkies, Charlie Reams, Laura J Simpson, Julian E Sale. Mol Cell 2010
188
21

FANCJ coordinates two pathways that maintain epigenetic stability at G-quadruplex DNA.
Peter Sarkies, Pierre Murat, Lara G Phillips, K J Patel, Shankar Balasubramanian, Julian E Sale. Nucleic Acids Res 2012
147
21

Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide.
Rashi Halder, Kangkan Halder, Priyanka Sharma, Gaurav Garg, Shantanu Sengupta, Shantanu Chowdhury. Mol Biosyst 2010
51
21

Oxidative DNA damage is epigenetic by regulating gene transcription via base excision repair.
Aaron M Fleming, Yun Ding, Cynthia J Burrows. Proc Natl Acad Sci U S A 2017
178
21

G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
390
21

Expression of the human telomerase reverse transcriptase gene is modulated by quadruplex formation in its first exon due to DNA methylation.
Pei-Tzu Li, Zi-Fu Wang, I-Te Chu, Yen-Min Kuan, Ming-Hao Li, Mu-Ching Huang, Pei-Chi Chiang, Ta-Chau Chang, Chin-Tin Chen. J Biol Chem 2017
21
33

TRF2 and lamin A/C interact to facilitate the functional organization of chromosome ends.
Ashley M Wood, Jannie M Rendtlew Danielsen, Catherine A Lucas, Ellen L Rice, David Scalzo, Takeshi Shimi, Robert D Goldman, Erica D Smith, Michelle M Le Beau, Steven T Kosak. Nat Commun 2014
82
18

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
847
18

The effect of the TRF2 N-terminal and TRFH regions on telomeric G-quadruplex structures.
Ilene M Pedroso, William Hayward, Terace M Fletcher. Nucleic Acids Res 2009
36
18

Control of human telomere length by TRF1 and TRF2.
A Smogorzewska, B van Steensel, A Bianchi, S Oelmann, M R Schaefer, G Schnapp, T de Lange. Mol Cell Biol 2000
575
18

Helix formation by guanylic acid.
M GELLERT, M N LIPSETT, D R DAVIES. Proc Natl Acad Sci U S A 1962
18

Pif1 family helicases suppress genome instability at G-quadruplex motifs.
Katrin Paeschke, Matthew L Bochman, P Daniela Garcia, Petr Cejka, Katherine L Friedman, Stephen C Kowalczykowski, Virginia A Zakian. Nature 2013
300
18

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
749
18

Re-evaluation of G-quadruplex propensity with G4Hunter.
Amina Bedrat, Laurent Lacroix, Jean-Louis Mergny. Nucleic Acids Res 2016
288
18

Telomeres and telomerase: three decades of progress.
Jerry W Shay, Woodring E Wright. Nat Rev Genet 2019
246
18

DNA damage and genome instability by G-quadruplex ligands are mediated by R loops in human cancer cells.
Alessio De Magis, Stefano G Manzo, Marco Russo, Jessica Marinello, Rita Morigi, Olivier Sordet, Giovanni Capranico. Proc Natl Acad Sci U S A 2019
116
18

Whole genome experimental maps of DNA G-quadruplexes in multiple species.
Giovanni Marsico, Vicki S Chambers, Aleksandr B Sahakyan, Patrick McCauley, Jonathan M Boutell, Marco Di Antonio, Shankar Balasubramanian. Nucleic Acids Res 2019
125
18

Telomere repeat-binding factor 2 binds extensively to extra-telomeric G-quadruplexes and regulates the epigenetic status of several gene promoters.
Ananda Kishore Mukherjee, Shalu Sharma, Sulochana Bagri, Rintu Kutum, Pankaj Kumar, Asgar Hussain, Prateek Singh, Dhurjhoti Saha, Anirban Kar, Debasis Dash,[...]. J Biol Chem 2019
14
42

How shelterin protects mammalian telomeres.
Wilhelm Palm, Titia de Lange. Annu Rev Genet 2008
15

Zinc-finger transcription factors are associated with guanine quadruplex motifs in human, chimpanzee, mouse and rat promoters genome-wide.
Pankaj Kumar, Vinod Kumar Yadav, Aradhita Baral, Parveen Kumar, Dhurjhoti Saha, Shantanu Chowdhury. Nucleic Acids Res 2011
49
15

Molecular targeting of TRF2 suppresses the growth and tumorigenesis of glioblastoma stem cells.
Yun Bai, Justin D Lathia, Peisu Zhang, William Flavahan, Jeremy N Rich, Mark P Mattson. Glia 2014
25
20

p21 in cancer: intricate networks and multiple activities.
Tarek Abbas, Anindya Dutta. Nat Rev Cancer 2009
15

Mammalian Rap1 controls telomere function and gene expression through binding to telomeric and extratelomeric sites.
Paula Martinez, Maria Thanasoula, Ana R Carlos, Gonzalo Gómez-López, Agueda M Tejera, Stefan Schoeftner, Orlando Dominguez, David G Pisano, Madalena Tarsounas, Maria A Blasco. Nat Cell Biol 2010
170
15

The regulatory G4 motif of the Kirsten ras (KRAS) gene is sensitive to guanine oxidation: implications on transcription.
Susanna Cogoi, Annalisa Ferino, Giulia Miglietta, Erik B Pedersen, Luigi E Xodo. Nucleic Acids Res 2018
59
15

Highly prevalent putative quadruplex sequence motifs in human DNA.
Alan K Todd, Matthew Johnston, Stephen Neidle. Nucleic Acids Res 2005
689
15

DNA secondary structures and epigenetic determinants of cancer genome evolution.
Subhajyoti De, Franziska Michor. Nat Struct Mol Biol 2011
149
15

Genome-wide analysis predicts DNA structural motifs as nucleosome exclusion signals.
Kangkan Halder, Rashi Halder, Shantanu Chowdhury. Mol Biosyst 2009
40
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.