A citation-based method for searching scientific literature

Alessandra Zappulo, David van den Bruck, Camilla Ciolli Mattioli, Vedran Franke, Koshi Imami, Erik McShane, Mireia Moreno-Estelles, Lorenzo Calviello, Andrei Filipchyk, Esteban Peguero-Sanchez, Thomas Müller, Andrew Woehler, Carmen Birchmeier, Enrique Merino, Nikolaus Rajewsky, Uwe Ohler, Esteban O Mazzoni, Matthias Selbach, Altuna Akalin, Marina Chekulaeva. Nat Commun 2017
Times Cited: 115







List of co-cited articles
1344 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging.
Iván J Cajigas, Georgi Tushev, Tristan J Will, Susanne tom Dieck, Nicole Fuerst, Erin M Schuman. Neuron 2012
459
46

Alternative 3' UTRs Modify the Localization, Regulatory Potential, Stability, and Plasticity of mRNAs in Neuronal Compartments.
Georgi Tushev, Caspar Glock, Maximilian Heumüller, Anne Biever, Marko Jovanovic, Erin M Schuman. Neuron 2018
156
32

Distal Alternative Last Exons Localize mRNAs to Neural Projections.
J Matthew Taliaferro, Marina Vidaki, Ruan Oliveira, Sara Olson, Lijun Zhan, Tanvi Saxena, Eric T Wang, Brenton R Graveley, Frank B Gertler, Maurice S Swanson,[...]. Mol Cell 2016
143
30

Dynamic Axonal Translation in Developing and Mature Visual Circuits.
Toshiaki Shigeoka, Hosung Jung, Jane Jung, Benita Turner-Bridger, Jiyeon Ohk, Julie Qiaojin Lin, Paul S Amieux, Christine E Holt. Cell 2016
253
26

mRNA transport & local translation in neurons.
Caspar Glock, Maximilian Heumüller, Erin M Schuman. Curr Opin Neurobiol 2017
122
20

mRNA localization: gene expression in the spatial dimension.
Kelsey C Martin, Anne Ephrussi. Cell 2009
686
20

Transcriptome analysis of embryonic and adult sensory axons reveals changes in mRNA repertoire localization.
Laura F Gumy, Giles S H Yeo, Yi-Chun Loraine Tung, Krishna H Zivraj, Dianna Willis, Giovanni Coppola, Brian Y H Lam, Jeffery L Twiss, Christine E Holt, James W Fawcett. RNA 2011
259
20

Subcellular profiling reveals distinct and developmentally regulated repertoire of growth cone mRNAs.
Krishna H Zivraj, Yi Chun Loraine Tung, Michael Piper, Laura Gumy, James W Fawcett, Giles S H Yeo, Christine E Holt. J Neurosci 2010
236
20

Atlas of Subcellular RNA Localization Revealed by APEX-Seq.
Furqan M Fazal, Shuo Han, Kevin R Parker, Pornchai Kaewsapsak, Jin Xu, Alistair N Boettiger, Howard Y Chang, Alice Y Ting. Cell 2019
219
20

Local translation in neurons: visualization and function.
Christine E Holt, Kelsey C Martin, Erin M Schuman. Nat Struct Mol Biol 2019
187
20

Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function.
Eric Lécuyer, Hideki Yoshida, Neela Parthasarathy, Christina Alm, Tomas Babak, Tanja Cerovina, Timothy R Hughes, Pavel Tomancak, Henry M Krause. Cell 2007
657
19

RNA Docking and Local Translation Regulate Site-Specific Axon Remodeling In Vivo.
Hovy Ho-Wai Wong, Julie Qiaojin Lin, Florian Ströhl, Cláudio Gouveia Roque, Jean-Michel Cioni, Roberta Cagnetta, Benita Turner-Bridger, Romain F Laine, William A Harris, Clemens F Kaminski,[...]. Neuron 2017
98
18

FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism.
Jennifer C Darnell, Sarah J Van Driesche, Chaolin Zhang, Ka Ying Sharon Hung, Aldo Mele, Claire E Fraser, Elizabeth F Stone, Cynthia Chen, John J Fak, Sung Wook Chi,[...]. Cell 2011
17

Subcellular transcriptomics-dissection of the mRNA composition in the axonal compartment of sensory neurons.
Adi Minis, Dvir Dahary, Ohad Manor, Dena Leshkowitz, Yitzhak Pilpel, Avraham Yaron. Dev Neurobiol 2014
82
20

In the right place at the right time: visualizing and understanding mRNA localization.
Adina R Buxbaum, Gal Haimovich, Robert H Singer. Nat Rev Mol Cell Biol 2015
333
17

A direct role for FMRP in activity-dependent dendritic mRNA transport links filopodial-spine morphogenesis to fragile X syndrome.
Jason B Dictenberg, Sharon A Swanger, Laura N Antar, Robert H Singer, Gary J Bassell. Dev Cell 2008
359
16

Glutamate-induced RNA localization and translation in neurons.
Young J Yoon, Bin Wu, Adina R Buxbaum, Sulagna Das, Albert Tsai, Brian P English, Jonathan B Grimm, Luke D Lavis, Robert H Singer. Proc Natl Acad Sci U S A 2016
104
16

Asymmetrical beta-actin mRNA translation in growth cones mediates attractive turning to netrin-1.
Kin-Mei Leung, Francisca P G van Horck, Andrew C Lin, Rachel Allison, Nancy Standart, Christine E Holt. Nat Neurosci 2006
363
16

Local protein synthesis is a ubiquitous feature of neuronal pre- and postsynaptic compartments.
Anne-Sophie Hafner, Paul G Donlin-Asp, Beulah Leitch, Etienne Herzog, Erin M Schuman. Science 2019
158
16

Axonal mRNA in uninjured and regenerating cortical mammalian axons.
Anne M Taylor, Nicole C Berchtold, Victoria M Perreau, Christina H Tu, Noo Li Jeon, Carl W Cotman. J Neurosci 2009
258
15

Molecular control of local translation in axon development and maintenance.
Jean-Michel Cioni, Max Koppers, Christine E Holt. Curr Opin Neurobiol 2018
72
20

Global mRNA polarization regulates translation efficiency in the intestinal epithelium.
Andreas E Moor, Matan Golan, Efi E Massasa, Doron Lemze, Tomer Weizman, Rom Shenhav, Shaked Baydatch, Orel Mizrahi, Roni Winkler, Ofra Golani,[...]. Science 2017
91
16

Genome-wide screen reveals APC-associated RNAs enriched in cell protrusions.
Stavroula Mili, Konstadinos Moissoglu, Ian G Macara. Nature 2008
215
15

Alternative 3' UTRs direct localization of functionally diverse protein isoforms in neuronal compartments.
Camilla Ciolli Mattioli, Aviv Rom, Vedran Franke, Koshi Imami, Gerard Arrey, Mandy Terne, Andrew Woehler, Altuna Akalin, Igor Ulitsky, Marina Chekulaeva. Nucleic Acids Res 2019
59
25


Localization of ASH1 mRNA particles in living yeast.
E Bertrand, P Chartrand, M Schaefer, S M Shenoy, R H Singer, R M Long. Mol Cell 1998
14

Axonally synthesized ATF4 transmits a neurodegenerative signal across brain regions.
Jimena Baleriola, Chandler A Walker, Ying Y Jean, John F Crary, Carol M Troy, Peter L Nagy, Ulrich Hengst. Cell 2014
202
14

Late Endosomes Act as mRNA Translation Platforms and Sustain Mitochondria in Axons.
Jean-Michel Cioni, Julie Qiaojin Lin, Anne V Holtermann, Max Koppers, Maximilian A H Jakobs, Afnan Azizi, Benita Turner-Bridger, Toshiaki Shigeoka, Kristian Franze, William A Harris,[...]. Cell 2019
184
14

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
13

Locally translated mTOR controls axonal local translation in nerve injury.
Marco Terenzio, Sandip Koley, Nitzan Samra, Ida Rishal, Qian Zhao, Pabitra K Sahoo, Anatoly Urisman, Letizia Marvaldi, Juan A Oses-Prieto, Craig Forester,[...]. Science 2018
135
13

Rapid Cue-Specific Remodeling of the Nascent Axonal Proteome.
Roberta Cagnetta, Christian K Frese, Toshiaki Shigeoka, Jeroen Krijgsveld, Christine E Holt. Neuron 2018
78
16

Presynaptic Protein Synthesis Is Required for Long-Term Plasticity of GABA Release.
Thomas J Younts, Hannah R Monday, Barna Dudok, Matthew E Klein, Bryen A Jordan, István Katona, Pablo E Castillo. Neuron 2016
116
12


Spatial regulation of beta-actin translation by Src-dependent phosphorylation of ZBP1.
Stefan Hüttelmaier, Daniel Zenklusen, Marcell Lederer, Jason Dictenberg, Mike Lorenz, Xiuhua Meng, Gary J Bassell, John Condeelis, Robert H Singer. Nature 2005
466
12

Direct visualization of newly synthesized target proteins in situ.
Susanne tom Dieck, Lisa Kochen, Cyril Hanus, Maximilian Heumüller, Ina Bartnik, Belquis Nassim-Assir, Katrin Merk, Thorsten Mosler, Sakshi Garg, Stefanie Bunse,[...]. Nat Methods 2015
165
12

On-Site Ribosome Remodeling by Locally Synthesized Ribosomal Proteins in Axons.
Toshiaki Shigeoka, Max Koppers, Hovy Ho-Wai Wong, Julie Qiaojin Lin, Roberta Cagnetta, Asha Dwivedy, Janaina de Freitas Nascimento, Francesca W van Tartwijk, Florian Ströhl, Jean-Michel Cioni,[...]. Cell Rep 2019
54
22


Distinct role of long 3' UTR BDNF mRNA in spine morphology and synaptic plasticity in hippocampal neurons.
Juan Ji An, Kusumika Gharami, Guey-Ying Liao, Newton H Woo, Anthony G Lau, Filip Vanevski, Enrique R Torre, Kevin R Jones, Yue Feng, Bai Lu,[...]. Cell 2008
471
11

Remote control of gene function by local translation.
Hosung Jung, Christos G Gkogkas, Nahum Sonenberg, Christine E Holt. Cell 2014
207
11

RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
Kok Hao Chen, Alistair N Boettiger, Jeffrey R Moffitt, Siyuan Wang, Xiaowei Zhuang. Science 2015
895
11

Neuronal RNA granules: movers and makers.
Michael A Kiebler, Gary J Bassell. Neuron 2006
416
11

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
11

Global Analysis of mRNA, Translation, and Protein Localization: Local Translation Is a Key Regulator of Cell Protrusions.
Faraz K Mardakheh, Angela Paul, Sandra Kümper, Amine Sadok, Hugh Paterson, Afshan Mccarthy, Yinyin Yuan, Christopher J Marshall. Dev Cell 2015
70
15

FMRP promotes RNA localization to neuronal projections through interactions between its RGG domain and G-quadruplex RNA sequences.
Raeann Goering, Laura I Hudish, Bryan B Guzman, Nisha Raj, Gary J Bassell, Holger A Russ, Daniel Dominguez, J Matthew Taliaferro. Elife 2020
43
25

Whole transcriptome profiling reveals the RNA content of motor axons.
Michael Briese, Lena Saal, Silke Appenzeller, Mehri Moradi, Apoorva Baluapuri, Michael Sendtner. Nucleic Acids Res 2016
66
15


Functionally diverse dendritic mRNAs rapidly associate with ribosomes following a novel experience.
Joshua A Ainsley, Laurel Drane, Jonathan Jacobs, Kara A Kittelberger, Leon G Reijmers. Nat Commun 2014
42
23

An essential role for beta-actin mRNA localization and translation in Ca2+-dependent growth cone guidance.
Jiaqi Yao, Yukio Sasaki, Zhexing Wen, Gary J Bassell, James Q Zheng. Nat Neurosci 2006
287
10

An NGF-responsive element targets myo-inositol monophosphatase-1 mRNA to sympathetic neuron axons.
Catia Andreassi, Carola Zimmermann, Richard Mitter, Salvatore Fusco, Serena De Vita, Adolfo Saiardi, Antonella Riccio. Nat Neurosci 2010
143
10



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.