A citation-based method for searching scientific literature

Kevin Monahan, Ira Schieren, Jonah Cheung, Alice Mumbey-Wafula, Edwin S Monuki, Stavros Lomvardas. Elife 2017
Times Cited: 40







List of co-cited articles
335 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Enhancer interaction networks as a means for singular olfactory receptor expression.
Eirene Markenscoff-Papadimitriou, William E Allen, Bradley M Colquitt, Tracie Goh, Karl K Murphy, Kevin Monahan, Colleen P Mosley, Nadav Ahituv, Stavros Lomvardas. Cell 2014
98
57

LHX2- and LDB1-mediated trans interactions regulate olfactory receptor choice.
Kevin Monahan, Adan Horta, Stavros Lomvardas. Nature 2019
95
42

An epigenetic signature for monoallelic olfactory receptor expression.
Angeliki Magklara, Angela Yen, Bradley M Colquitt, E Josephine Clowney, William Allen, Eirene Markenscoff-Papadimitriou, Zoe A Evans, Pouya Kheradpour, George Mountoufaris, Catriona Carey,[...]. Cell 2011
182
37

Nuclear aggregation of olfactory receptor genes governs their monogenic expression.
E Josephine Clowney, Mark A LeGros, Colleen P Mosley, Fiona G Clowney, Eirene C Markenskoff-Papadimitriou, Markko Myllys, Gilad Barnea, Carolyn A Larabell, Stavros Lomvardas. Cell 2012
199
32


Interchromosomal interactions and olfactory receptor choice.
Stavros Lomvardas, Gilad Barnea, David J Pisapia, Monica Mendelsohn, Jennifer Kirkland, Richard Axel. Cell 2006
427
27

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
25


Regulation of the probability of mouse odorant receptor gene choice.
Mona Khan, Evelien Vaes, Peter Mombaerts. Cell 2011
100
25

Deletion of the core-H region in mice abolishes the expression of three proximal odorant receptor genes in cis.
Hirofumi Nishizumi, Kouhei Kumasaka, Nobuko Inoue, Ai Nakashima, Hitoshi Sakano. Proc Natl Acad Sci U S A 2007
73
22

Negative feedback regulation ensures the one receptor-one olfactory neuron rule in mouse.
Shou Serizawa, Kazunari Miyamichi, Hiroko Nakatani, Misao Suzuki, Michiko Saito, Yoshihiro Yoshihara, Hitoshi Sakano. Science 2003
368
22


Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
17

An epigenetic trap stabilizes singular olfactory receptor expression.
David B Lyons, William E Allen, Tracie Goh, Lulu Tsai, Gilad Barnea, Stavros Lomvardas. Cell 2013
92
17

Nuclear compartmentalization of odorant receptor genes.
Lucia M Armelin-Correa, Luciana M Gutiyama, Débora Y C Brandt, Bettina Malnic. Proc Natl Acad Sci U S A 2014
32
21

Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis.
Naresh K Hanchate, Kunio Kondoh, Zhonghua Lu, Donghui Kuang, Xiaolan Ye, Xiaojie Qiu, Lior Pachter, Cole Trapnell, Linda B Buck. Science 2015
102
17

Heterochromatin-mediated gene silencing facilitates the diversification of olfactory neurons.
David B Lyons, Angeliki Magklara, Tracie Goh, Srihari C Sampath, Anne Schaefer, Gunnar Schotta, Stavros Lomvardas. Cell Rep 2014
39
17


A long-range cis-regulatory element for class I odorant receptor genes.
Tetsuo Iwata, Yoshihito Niimura, Chizuru Kobayashi, Daichi Shirakawa, Hikoyu Suzuki, Takayuki Enomoto, Kazushige Touhara, Yoshihiro Yoshihara, Junji Hirota. Nat Commun 2017
16
43

Monoallelic expression of olfactory receptors.
Kevin Monahan, Stavros Lomvardas. Annu Rev Cell Dev Biol 2015
65
15


Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
15

Co-opting the unfolded protein response to elicit olfactory receptor feedback.
Ryan P Dalton, David B Lyons, Stavros Lomvardas. Cell 2013
81
15

The olfactory receptor gene superfamily of the mouse.
Xinmin Zhang, Stuart Firestein. Nat Neurosci 2002
578
15

Minigenes impart odorant receptor-specific axon guidance in the olfactory bulb.
Anne Vassalli, Andrea Rothman, Paul Feinstein, Martin Zapotocky, Peter Mombaerts. Neuron 2002
189
15

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
15


Single-cell Hi-C reveals cell-to-cell variability in chromosome structure.
Takashi Nagano, Yaniv Lubling, Tim J Stevens, Stefan Schoenfelder, Eitan Yaffe, Wendy Dean, Ernest D Laue, Amos Tanay, Peter Fraser. Nature 2013
763
12

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells.
Stefan Schoenfelder, Tom Sexton, Lyubomira Chakalova, Nathan F Cope, Alice Horton, Simon Andrews, Sreenivasulu Kurukuti, Jennifer A Mitchell, David Umlauf, Daniela S Dimitrova,[...]. Nat Genet 2010
491
12

3D structures of individual mammalian genomes studied by single-cell Hi-C.
Tim J Stevens, David Lando, Srinjan Basu, Liam P Atkinson, Yang Cao, Steven F Lee, Martin Leeb, Kai J Wohlfahrt, Wayne Boucher, Aoife O'Shaughnessy-Kirwan,[...]. Nature 2017
348
12

Stochastic gene expression in mammals: lessons from olfaction.
Angeliki Magklara, Stavros Lomvardas. Trends Cell Biol 2013
49
12

Gene switching and the stability of odorant receptor gene choice.
Benjamin M Shykind, S Christy Rohani, Sean O'Donnell, Adriana Nemes, Monica Mendelsohn, Yonghua Sun, Richard Axel, Gilad Barnea. Cell 2004
170
12

A feedback mechanism regulates monoallelic odorant receptor expression.
Joseph W Lewcock, Randall R Reed. Proc Natl Acad Sci U S A 2004
177
12

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
12

Coactivator condensation at super-enhancers links phase separation and gene control.
Benjamin R Sabari, Alessandra Dall'Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, Brian J Abraham, Nancy M Hannett, Alicia V Zamudio, John C Manteiga,[...]. Science 2018
681
12

Lhx2 Determines Odorant Receptor Expression Frequency in Mature Olfactory Sensory Neurons.
Guangfan Zhang, William B Titlow, Stephanie M Biecker, Arnold J Stromberg, Timothy S McClintock. eNeuro 2016
13
38

Olfactory receptor genes expressed in distinct lineages are sequestered in different nuclear compartments.
Kyoung-Hye Yoon, Tobias Ragoczy, Zhonghua Lu, Kunio Kondoh, Donghui Kuang, Mark Groudine, Linda B Buck. Proc Natl Acad Sci U S A 2015
17
29

The mouse olfactory receptor gene family.
Paul A Godfrey, Bettina Malnic, Linda B Buck. Proc Natl Acad Sci U S A 2004
228
12

FIMO: scanning for occurrences of a given motif.
Charles E Grant, Timothy L Bailey, William Stafford Noble. Bioinformatics 2011
12


Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
10

Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.
Sofia A Quinodoz, Noah Ollikainen, Barbara Tabak, Ali Palla, Jan Marten Schmidt, Elizabeth Detmar, Mason M Lai, Alexander A Shishkin, Prashant Bhat, Yodai Takei,[...]. Cell 2018
267
10

Chromatin architecture reorganization during stem cell differentiation.
Jesse R Dixon, Inkyung Jung, Siddarth Selvaraj, Yin Shen, Jessica E Antosiewicz-Bourget, Ah Young Lee, Zhen Ye, Audrey Kim, Nisha Rajagopal, Wei Xie,[...]. Nature 2015
756
10

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.
Darío G Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M Opitz, Renata Laxova,[...]. Cell 2015
920
10

Active genes dynamically colocalize to shared sites of ongoing transcription.
Cameron S Osborne, Lyubomira Chakalova, Karen E Brown, David Carter, Alice Horton, Emmanuel Debrand, Beatriz Goyenechea, Jennifer A Mitchell, Susana Lopes, Wolf Reik,[...]. Nat Genet 2004
738
10

Comparison of Hi-C results using in-solution versus in-nucleus ligation.
Takashi Nagano, Csilla Várnai, Stefan Schoenfelder, Biola-Maria Javierre, Steven W Wingett, Peter Fraser. Genome Biol 2015
102
10


Complex multi-enhancer contacts captured by genome architecture mapping.
Robert A Beagrie, Antonio Scialdone, Markus Schueler, Dorothee C A Kraemer, Mita Chotalia, Sheila Q Xie, Mariano Barbieri, Inês de Santiago, Liron-Mark Lavitas, Miguel R Branco,[...]. Nature 2017
270
10

Interchromosomal associations between alternatively expressed loci.
Charalampos G Spilianakis, Maria D Lalioti, Terrence Town, Gap Ryol Lee, Richard A Flavell. Nature 2005
512
10



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.