A citation-based method for searching scientific literature

Dmitriy A Bolotin, Stanislav Poslavsky, Alexey N Davydov, Felix E Frenkel, Lorenzo Fanchi, Olga I Zolotareva, Saskia Hemmers, Ekaterina V Putintseva, Anna S Obraztsova, Mikhail Shugay, Ravshan I Ataullakhanov, Alexander Y Rudensky, Ton N Schumacher, Dmitriy M Chudakov. Nat Biotechnol 2017
Times Cited: 138







List of co-cited articles
960 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


MiXCR: software for comprehensive adaptive immunity profiling.
Dmitriy A Bolotin, Stanislav Poslavsky, Igor Mitrophanov, Mikhail Shugay, Ilgar Z Mamedov, Ekaterina V Putintseva, Dmitriy M Chudakov. Nat Methods 2015
728
36

B cells and tertiary lymphoid structures promote immunotherapy response.
Beth A Helmink, Sangeetha M Reddy, Jianjun Gao, Shaojun Zhang, Rafet Basar, Rohit Thakur, Keren Yizhak, Moshe Sade-Feldman, Jorge Blando, Guangchun Han,[...]. Nature 2020
797
27

Tertiary lymphoid structures improve immunotherapy and survival in melanoma.
Rita Cabrita, Martin Lauss, Adriana Sanna, Marco Donia, Mathilde Skaarup Larsen, Shamik Mitra, Iva Johansson, Bengt Phung, Katja Harbst, Johan Vallon-Christersson,[...]. Nature 2020
653
25

B cells are associated with survival and immunotherapy response in sarcoma.
Florent Petitprez, Aurélien de Reyniès, Emily Z Keung, Tom Wei-Wu Chen, Cheng-Ming Sun, Julien Calderaro, Yung-Ming Jeng, Li-Ping Hsiao, Laetitia Lacroix, Antoine Bougoüin,[...]. Nature 2020
671
25

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
23

B cells, plasma cells and antibody repertoires in the tumour microenvironment.
George V Sharonov, Ekaterina O Serebrovskaya, Diana V Yuzhakova, Olga V Britanova, Dmitriy M Chudakov. Nat Rev Immunol 2020
187
23

Tertiary lymphoid structures in the era of cancer immunotherapy.
Catherine Sautès-Fridman, Florent Petitprez, Julien Calderaro, Wolf Herman Fridman. Nat Rev Cancer 2019
460
17


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
16

Prognostic B-cell signatures using mRNA-seq in patients with subtype-specific breast and ovarian cancer.
Michael D Iglesia, Benjamin G Vincent, Joel S Parker, Katherine A Hoadley, Lisa A Carey, Charles M Perou, Jonathan S Serody. Clin Cancer Res 2014
169
15

Presence of B cells in tertiary lymphoid structures is associated with a protective immunity in patients with lung cancer.
Claire Germain, Sacha Gnjatic, Fella Tamzalit, Samantha Knockaert, Romain Remark, Jérémy Goc, Alice Lepelley, Etienne Becht, Sandrine Katsahian, Geoffray Bizouard,[...]. Am J Respir Crit Care Med 2014
370
15

Landscape of B cell immunity and related immune evasion in human cancers.
Xihao Hu, Jian Zhang, Jin Wang, Jingxin Fu, Taiwen Li, Xiaoqi Zheng, Binbin Wang, Shengqing Gu, Peng Jiang, Jingyu Fan,[...]. Nat Genet 2019
69
21

Intratumoral immunoglobulin isotypes predict survival in lung adenocarcinoma subtypes.
O I Isaeva, G V Sharonov, E O Serebrovskaya, M A Turchaninova, A R Zaretsky, M Shugay, D M Chudakov. J Immunother Cancer 2019
41
34

Inflammation-induced IgA+ cells dismantle anti-liver cancer immunity.
Shabnam Shalapour, Xue-Jia Lin, Ingmar N Bastian, John Brain, Alastair D Burt, Alexander A Aksenov, Alison F Vrbanac, Weihua Li, Andres Perkins, Takaji Matsutani,[...]. Nature 2017
251
14

Antigen-Presenting Intratumoral B Cells Affect CD4+ TIL Phenotypes in Non-Small Cell Lung Cancer Patients.
Tullia C Bruno, Peggy J Ebner, Brandon L Moore, Olivia G Squalls, Katherine A Waugh, Evgeniy B Eruslanov, Sunil Singhal, John D Mitchell, Wilbur A Franklin, Daniel T Merrick,[...]. Cancer Immunol Res 2017
116
13

A Strong B-cell Response Is Part of the Immune Landscape in Human High-Grade Serous Ovarian Metastases.
Anne Montfort, Oliver Pearce, Eleni Maniati, Benjamin G Vincent, Lisa Bixby, Steffen Böhm, Thomas Dowe, Edmund H Wilkes, Probir Chakravarty, Richard Thompson,[...]. Clin Cancer Res 2017
105
12

Genomic Analysis of Immune Cell Infiltrates Across 11 Tumor Types.
Michael D Iglesia, Joel S Parker, Katherine A Hoadley, Jonathan S Serody, Charles M Perou, Benjamin G Vincent. J Natl Cancer Inst 2016
197
12

B cells sustain inflammation and predict response to immune checkpoint blockade in human melanoma.
Johannes Griss, Wolfgang Bauer, Christine Wagner, Martin Simon, Minyi Chen, Katharina Grabmeier-Pfistershammer, Margarita Maurer-Granofszky, Florian Roka, Thomas Penz, Christoph Bock,[...]. Nat Commun 2019
142
12

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
11

Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V'DJer.
Lisle E Mose, Sara R Selitsky, Lisa M Bixby, David L Marron, Michael D Iglesia, Jonathan S Serody, Charles M Perou, Benjamin G Vincent, Joel S Parker. Bioinformatics 2016
38
28

Neogenesis of lymphoid structures and antibody responses occur in human melanoma metastases.
Arcadi Cipponi, Marjorie Mercier, Teofila Seremet, Jean-François Baurain, Ivan Théate, Joost van den Oord, Marguerite Stas, Thierry Boon, Pierre G Coulie, Nicolas van Baren. Cancer Res 2012
159
11

CD20+ tumor-infiltrating lymphocytes have an atypical CD27- memory phenotype and together with CD8+ T cells promote favorable prognosis in ovarian cancer.
Julie S Nielsen, Rob A Sahota, Katy Milne, Sara E Kost, Nancy J Nesslinger, Peter H Watson, Brad H Nelson. Clin Cancer Res 2012
326
11

Intra-tumour IgA1 is common in cancer and is correlated with poor prognosis in bladder cancer.
Charlotte Welinder, Karin Jirström, Sophie Lehn, Björn Nodin, György Marko-Varga, Ola Blixt, Lena Danielsson, Bo Jansson. Heliyon 2016
14
78

Monitoring the systemic human memory B cell compartment of melanoma patients for anti-tumor IgG antibodies.
Amy E Gilbert, Panagiotis Karagiannis, Tihomir Dodev, Alexander Koers, Katie Lacy, Debra H Josephs, Pooja Takhar, Jenny L C Geh, Ciaran Healy, Mark Harries,[...]. PLoS One 2011
52
19

IgG4 subclass antibodies impair antitumor immunity in melanoma.
Panagiotis Karagiannis, Amy E Gilbert, Debra H Josephs, Niwa Ali, Tihomir Dodev, Louise Saul, Isabel Correa, Luke Roberts, Emma Beddowes, Alexander Koers,[...]. J Clin Invest 2013
135
10

The prognostic landscape of genes and infiltrating immune cells across human cancers.
Andrew J Gentles, Aaron M Newman, Chih Long Liu, Scott V Bratman, Weiguo Feng, Dongkyoon Kim, Viswam S Nair, Yue Xu, Amanda Khuong, Chuong D Hoang,[...]. Nat Med 2015
10

Margin-infiltrating CD20(+) B cells display an atypical memory phenotype and correlate with favorable prognosis in hepatocellular carcinoma.
Jie-Yi Shi, Qiang Gao, Zhi-Chao Wang, Jian Zhou, Xiao-Ying Wang, Zhi-Hui Min, Ying-Hong Shi, Guo-Ming Shi, Zhen-Bin Ding, Ai-Wu Ke,[...]. Clin Cancer Res 2013
113
10

VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires.
Mikhail Shugay, Dmitriy V Bagaev, Maria A Turchaninova, Dmitriy A Bolotin, Olga V Britanova, Ekaterina V Putintseva, Mikhail V Pogorelyy, Vadim I Nazarov, Ivan V Zvyagin, Vitalina I Kirgizova,[...]. PLoS Comput Biol 2015
289
10

Tumor infiltrating B-cells signal functional humoral immune responses in breast cancer.
Soizic Garaud, Laurence Buisseret, Cinzia Solinas, Chunyan Gu-Trantien, Alexandre de Wind, Gert Van den Eynden, Celine Naveaux, Jean-Nicolas Lodewyckx, Anaïs Boisson, Hughes Duvillier,[...]. JCI Insight 2019
106
10

IgA transcytosis and antigen recognition govern ovarian cancer immunity.
Subir Biswas, Gunjan Mandal, Kyle K Payne, Carmen M Anadon, Chandler D Gatenbee, Ricardo A Chaurio, Tara Lee Costich, Carlos Moran, Carly M Harro, Kristen E Rigolizzo,[...]. Nature 2021
43
23

Spatiotemporal dynamics of intratumoral immune cells reveal the immune landscape in human cancer.
Gabriela Bindea, Bernhard Mlecnik, Marie Tosolini, Amos Kirilovsky, Maximilian Waldner, Anna C Obenauf, Helen Angell, Tessa Fredriksen, Lucie Lafontaine, Anne Berger,[...]. Immunity 2013
9

Clonal replacement of tumor-specific T cells following PD-1 blockade.
Kathryn E Yost, Ansuman T Satpathy, Daniel K Wells, Yanyan Qi, Chunlin Wang, Robin Kageyama, Katherine L McNamara, Jeffrey M Granja, Kavita Y Sarin, Ryanne A Brown,[...]. Nat Med 2019
538
9

Immunosuppressive plasma cells impede T-cell-dependent immunogenic chemotherapy.
Shabnam Shalapour, Joan Font-Burgada, Giuseppe Di Caro, Zhenyu Zhong, Elsa Sanchez-Lopez, Debanjan Dhar, Gerald Willimsky, Massimo Ammirante, Amy Strasner, Donna E Hansel,[...]. Nature 2015
334
9

Tumor-evoked regulatory B cells promote breast cancer metastasis by converting resting CD4⁺ T cells to T-regulatory cells.
Purevdorj B Olkhanud, Bazarragchaa Damdinsuren, Monica Bodogai, Ronald E Gress, Ranjan Sen, Katarzyna Wejksza, Enkhzol Malchinkhuu, Robert P Wersto, Arya Biragyn. Cancer Res 2011
394
9

IgBLAST: an immunoglobulin variable domain sequence analysis tool.
Jian Ye, Ning Ma, Thomas L Madden, James M Ostell. Nucleic Acids Res 2013
603
9

Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab.
Nadeem Riaz, Jonathan J Havel, Vladimir Makarov, Alexis Desrichard, Walter J Urba, Jennifer S Sims, F Stephen Hodi, Salvador Martín-Algarra, Rajarsi Mandal, William H Sharfman,[...]. Cell 2017
927
9

Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade.
Pornpimol Charoentong, Francesca Finotello, Mihaela Angelova, Clemens Mayer, Mirjana Efremova, Dietmar Rieder, Hubert Hackl, Zlatko Trajanoski. Cell Rep 2017
8

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
8

Intratumoral tertiary lymphoid organ is a favourable prognosticator in patients with pancreatic cancer.
N Hiraoka, Y Ino, R Yamazaki-Itoh, Y Kanai, T Kosuge, K Shimada. Br J Cancer 2015
157
8

B cells regulate macrophage phenotype and response to chemotherapy in squamous carcinomas.
Nesrine I Affara, Brian Ruffell, Terry R Medler, Andrew J Gunderson, Magnus Johansson, Sophia Bornstein, Emily Bergsland, Martin Steinhoff, Yijin Li, Qian Gong,[...]. Cancer Cell 2014
195
8

Allogeneic IgG combined with dendritic cell stimuli induce antitumour T-cell immunity.
Yaron Carmi, Matthew H Spitzer, Ian L Linde, Bryan M Burt, Tyler R Prestwood, Nicola Perlman, Matthew G Davidson, Justin A Kenkel, Ehud Segal, Ganesh V Pusapati,[...]. Nature 2015
133
8

Spatial distribution of B cells predicts prognosis in human pancreatic adenocarcinoma.
Giovanni Francesco Castino, Nina Cortese, Giovanni Capretti, Simone Serio, Giuseppe Di Caro, Rossana Mineri, Elena Magrini, Fabio Grizzi, Paola Cappello, Francesco Novelli,[...]. Oncoimmunology 2015
106
8

FcRgamma activation regulates inflammation-associated squamous carcinogenesis.
Pauline Andreu, Magnus Johansson, Nesrine I Affara, Ferdinando Pucci, Tingting Tan, Simon Junankar, Lidiya Korets, Julia Lam, David Tawfik, David G DeNardo,[...]. Cancer Cell 2010
384
8

Ectopic lymphoid-like structures in infection, cancer and autoimmunity.
Costantino Pitzalis, Gareth W Jones, Michele Bombardieri, Simon A Jones. Nat Rev Immunol 2014
407
8

B lymphocytes can be activated to act as antigen presenting cells to promote anti-tumor responses.
Renata Ariza Marques Rossetti, Noely Paula Cristina Lorenzi, Kaori Yokochi, Maria Beatriz Sartor de Faria Rosa, Luciana Benevides, Paulo Francisco Ramos Margarido, Edmund Chada Baracat, Jesus Paula Carvalho, Luisa Lina Villa, Ana Paula Lepique. PLoS One 2018
36
22

An immunogenic personal neoantigen vaccine for patients with melanoma.
Patrick A Ott, Zhuting Hu, Derin B Keskin, Sachet A Shukla, Jing Sun, David J Bozym, Wandi Zhang, Adrienne Luoma, Anita Giobbie-Hurder, Lauren Peter,[...]. Nature 2017
8

Germinal Centers Determine the Prognostic Relevance of Tertiary Lymphoid Structures and Are Impaired by Corticosteroids in Lung Squamous Cell Carcinoma.
Karīna Siliņa, Alex Soltermann, Farkhondeh Movahedian Attar, Ruben Casanova, Zina M Uckeley, Helen Thut, Muriel Wandres, Sergejs Isajevs, Phil Cheng, Alessandra Curioni-Fontecedro,[...]. Cancer Res 2018
130
8


Interleukin 21-induced granzyme B-expressing B cells infiltrate tumors and regulate T cells.
Stefanie Lindner, Karen Dahlke, Kai Sontheimer, Magdalena Hagn, Christof Kaltenmeier, Thomas F E Barth, Thamara Beyer, Frank Reister, Dorit Fabricius, Ramin Lotfi,[...]. Cancer Res 2013
206
8

Prognostic value of B cells in cutaneous melanoma.
Sara R Selitsky, Lisle E Mose, Christof C Smith, Shengjie Chai, Katherine A Hoadley, Dirk P Dittmer, Stergios J Moschos, Joel S Parker, Benjamin G Vincent. Genome Med 2019
56
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.