A citation-based method for searching scientific literature

Stefanie Dukowic-Schulze, Chang Liu, Changbin Chen. Plant Cell Rep 2018
Times Cited: 3







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


5-Azacytidine mediated reactivation of silenced transgenes in potato (Solanum tuberosum) at the whole plant level.
Dimitrij Tyč, Eva Nocarová, Lenka Sikorová, Lukáš Fischer. Plant Cell Rep 2017
7
66

Determination of histone epigenetic marks in Arabidopsis and tomato genes in the early response to Botrytis cinerea.
Óscar Crespo-Salvador, Mónica Escamilla-Aguilar, Jaime López-Cruz, Gerardo López-Rodas, Carmen González-Bosch. Plant Cell Rep 2018
16
33


RNAi-mediated SMV P3 cistron silencing confers significantly enhanced resistance to multiple Potyvirus strains and isolates in transgenic soybean.
Xiangdong Yang, Lu Niu, Wei Zhang, Jing Yang, Guojie Xing, Hongli He, Dongquan Guo, Qian Du, Xueyan Qian, Yao Yao,[...]. Plant Cell Rep 2018
19
33

A histone deacetylase gene, SlHDA3, acts as a negative regulator of fruit ripening and carotenoid accumulation.
Jun-E Guo, Zongli Hu, Xiaohui Yu, Anzhou Li, Fenfen Li, Yunshu Wang, Shibing Tian, Guoping Chen. Plant Cell Rep 2018
19
33

Involvement of histone acetylation and deacetylation in regulating auxin responses and associated phenotypic changes in plants.
Abdul Wakeel, Imran Ali, Ali Raza Khan, Minjie Wu, Sakila Upreti, Dongdong Liu, Bohan Liu, Yinbo Gan. Plant Cell Rep 2018
7
33

Epigenetic regulation of the expression of WRKY75 transcription factor in response to biotic and abiotic stresses in Solanaceae plants.
María José López-Galiano, Ana I González-Hernández, Oscar Crespo-Salvador, Carolina Rausell, M Dolores Real, Mónica Escamilla, Gemma Camañes, Pilar García-Agustín, Carmen González-Bosch, Inmaculada García-Robles. Plant Cell Rep 2018
9
33

Phytopathogen-induced changes to plant methylomes.
Tarek Hewezi, Vince Pantalone, Morgan Bennett, C Neal Stewart, Tessa M Burch-Smith. Plant Cell Rep 2018
17
33

Active DNA demethylation: mechanism and role in plant development.
Yan Li, Suresh Kumar, Weiqiang Qian. Plant Cell Rep 2018
34
33

Histone acetylation is involved in GA-mediated 45S rDNA decondensation in maize aleurone layers.
Xueke Zheng, Haoli Hou, Hao Zhang, Mengxia Yue, Yan Hu, Lijia Li. Plant Cell Rep 2018
7
33

The gymnastics of epigenomics in rice.
Aditya Banerjee, Aryadeep Roychoudhury. Plant Cell Rep 2018
9
33


Plant small RNAs: the essential epigenetic regulators of gene expression for salt-stress responses and tolerance.
Vinay Kumar, Tushar Khare, Varsha Shriram, Shabir H Wani. Plant Cell Rep 2018
39
33

Epigenetic regulation of agronomical traits in Brassicaceae.
Etsuko Itabashi, Kenji Osabe, Ryo Fujimoto, Tomohiro Kakizaki. Plant Cell Rep 2018
12
33


Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast.
Folkert J van Werven, Gregor Neuert, Natalie Hendrick, Aurélie Lardenois, Stephen Buratowski, Alexander van Oudenaarden, Michael Primig, Angelika Amon. Cell 2012
177
33

Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs.
David Managadze, Igor B Rogozin, Diana Chernikova, Svetlana A Shabalina, Eugene V Koonin. Genome Biol Evol 2011
69
33

CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.
Lei Kong, Yong Zhang, Zhi-Qiang Ye, Xiao-Qiao Liu, Shu-Qi Zhao, Liping Wei, Ge Gao. Nucleic Acids Res 2007
33

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
33

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.
Andrea Pauli, Eivind Valen, Michael F Lin, Manuel Garber, Nadine L Vastenhouw, Joshua Z Levin, Lin Fan, Albin Sandelin, John L Rinn, Aviv Regev,[...]. Genome Res 2012
563
33

FARNA: knowledgebase of inferred functions of non-coding RNA transcripts.
Tanvir Alam, Mahmut Uludag, Magbubah Essack, Adil Salhi, Haitham Ashoor, John B Hanks, Craig Kapfer, Katsuhiko Mineta, Takashi Gojobori, Vladimir B Bajic. Nucleic Acids Res 2017
19
33

H19 acts as a trans regulator of the imprinted gene network controlling growth in mice.
Anne Gabory, Marie-Anne Ripoche, Anne Le Digarcher, Françoise Watrin, Ahmed Ziyyat, Thierry Forné, Hélène Jammes, Justin F X Ainscough, M Azim Surani, Laurent Journot,[...]. Development 2009
256
33

Critical roles of long noncoding RNAs in Drosophila spermatogenesis.
Kejia Wen, Lijuan Yang, Tuanlin Xiong, Chao Di, Danhui Ma, Menghua Wu, Zhaoyu Xue, Xuedi Zhang, Li Long, Weimin Zhang,[...]. Genome Res 2016
95
33

Dynamic and Widespread lncRNA Expression in a Sponge and the Origin of Animal Complexity.
Federico Gaiti, Selene L Fernandez-Valverde, Nagayasu Nakanishi, Andrew D Calcino, Itai Yanai, Milos Tanurdzic, Bernard M Degnan. Mol Biol Evol 2015
42
33

Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice.
Yu-Chan Zhang, Jian-You Liao, Ze-Yuan Li, Yang Yu, Jin-Ping Zhang, Quan-Feng Li, Liang-Hu Qu, Wen-Sheng Shu, Yue-Qin Chen. Genome Biol 2014
290
33

Epigenetic regulation by long noncoding RNAs in plants.
Jae Bok Heo, Yong-Suk Lee, Sibum Sung. Chromosome Res 2013
73
33


Long noncoding RNAs are spatially correlated with transcription factors and regulate lung development.
Michael J Herriges, Daniel T Swarr, Michael P Morley, Komal S Rathi, Tien Peng, Kathleen M Stewart, Edward E Morrisey. Genes Dev 2014
112
33

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
33

Chromatin reprogramming during the somatic-to-reproductive cell fate transition in plants.
Wenjing She, Daniel Grimanelli, Kinga Rutowicz, Marek W J Whitehead, Marcin Puzio, Maciej Kotlinski, Andrzej Jerzmanowski, Célia Baroux. Development 2013
103
33

Xist-deficient mice are defective in dosage compensation but not spermatogenesis.
Y Marahrens, B Panning, J Dausman, W Strauss, R Jaenisch. Genes Dev 1997
563
33

Analysis of non-coding transcriptome in rice and maize uncovers roles of conserved lncRNAs associated with agriculture traits.
Huan Wang, Qi-Wen Niu, Hui-Wen Wu, Jun Liu, Jian Ye, Niu Yu, Nam-Hai Chua. Plant J 2015
84
33

Natural RNA circles function as efficient microRNA sponges.
Thomas B Hansen, Trine I Jensen, Bettina H Clausen, Jesper B Bramsen, Bente Finsen, Christian K Damgaard, Jørgen Kjems. Nature 2013
33

Antisense transcription controls cell fate in Saccharomyces cerevisiae.
Cintia F Hongay, Paula L Grisafi, Timothy Galitski, Gerald R Fink. Cell 2006
262
33

Sequential expression of long noncoding RNA as mRNA gene expression in specific stages of mouse spermatogenesis.
Meng Liang, Wenqing Li, Hui Tian, Tao Hu, Lu Wang, Yu Lin, Yulei Li, Hefeng Huang, Fei Sun. Sci Rep 2014
60
33

Long non-coding RNAs are major contributors to transcriptome changes in sunflower meiocytes with different recombination rates.
Nathalia M V Flórez-Zapata, M Humberto Reyes-Valdés, Octavio Martínez. BMC Genomics 2016
18
33

The genomic binding sites of a noncoding RNA.
Matthew D Simon, Charlotte I Wang, Peter V Kharchenko, Jason A West, Brad A Chapman, Artyom A Alekseyenko, Mark L Borowsky, Mitzi I Kuroda, Robert E Kingston. Proc Natl Acad Sci U S A 2011
300
33

Requirement for Xist in X chromosome inactivation.
G D Penny, G F Kay, S A Sheardown, S Rastan, N Brockdorff. Nature 1996
959
33

The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters.
Xichen Bao, Haitao Wu, Xihua Zhu, Xiangpeng Guo, Andrew P Hutchins, Zhiwei Luo, Hong Song, Yongqiang Chen, Keyu Lai, Menghui Yin,[...]. Cell Res 2015
136
33

Unique features of the plant life cycle and their consequences.
Virginia Walbot, Matthew M S Evans. Nat Rev Genet 2003
111
33

Linking Long Noncoding RNA Localization and Function.
Ling-Ling Chen. Trends Biochem Sci 2016
570
33

Antisense COOLAIR mediates the coordinated switching of chromatin states at FLC during vernalization.
Tibor Csorba, Julia I Questa, Qianwen Sun, Caroline Dean. Proc Natl Acad Sci U S A 2014
225
33

A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice.
Jihua Ding, Qing Lu, Yidan Ouyang, Hailiang Mao, Pingbo Zhang, Jialing Yao, Caiguo Xu, Xianghua Li, Jinghua Xiao, Qifa Zhang. Proc Natl Acad Sci U S A 2012
320
33

Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions.
Ci Chu, Kun Qu, Franklin L Zhong, Steven E Artandi, Howard Y Chang. Mol Cell 2011
850
33

mrhl RNA, a long noncoding RNA, negatively regulates Wnt signaling through its protein partner Ddx5/p68 in mouse spermatogonial cells.
Gayatri Arun, Vijay Suresh Akhade, Sainitin Donakonda, Manchanahalli R Satyanarayana Rao. Mol Cell Biol 2012
90
33

Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes.
Tanvir Alam, Yulia A Medvedeva, Hui Jia, James B Brown, Leonard Lipovich, Vladimir B Bajic. PLoS One 2014
57
33


Global identification of human transcribed sequences with genome tiling arrays.
Paul Bertone, Viktor Stolc, Thomas E Royce, Joel S Rozowsky, Alexander E Urban, Xiaowei Zhu, John L Rinn, Waraporn Tongprasit, Manoj Samanta, Sherman Weissman,[...]. Science 2004
759
33


Evolution and function of genomic imprinting in plants.
Jessica A Rodrigues, Daniel Zilberman. Genes Dev 2015
73
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.