A citation-based method for searching scientific literature

Beatrice Mao, Cynthia F Moss, Gerald S Wilkinson. PLoS One 2017
Times Cited: 2







List of co-cited articles
7 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The hearing gene Prestin reunites echolocating bats.
Gang Li, Jinhong Wang, Stephen J Rossiter, Gareth Jones, James A Cotton, Shuyi Zhang. Proc Natl Acad Sci U S A 2008
80
100

Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred G Grabherr, Brian J Haas, Moran Yassour, Joshua Z Levin, Dawn A Thompson, Ido Amit, Xian Adiconis, Lin Fan, Raktima Raychowdhury, Qiandong Zeng,[...]. Nat Biotechnol 2011
100

WEGO: a web tool for plotting GO annotations.
Jia Ye, Lin Fang, Hongkun Zheng, Yong Zhang, Jie Chen, Zengjin Zhang, Jing Wang, Shengting Li, Ruiqiang Li, Lars Bolund,[...]. Nucleic Acids Res 2006
100

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.
Ana Conesa, Stefan Götz, Juan Miguel García-Gómez, Javier Terol, Manuel Talón, Montserrat Robles. Bioinformatics 2005
100


Parallel signatures of sequence evolution among hearing genes in echolocating mammals: an emerging model of genetic convergence.
K T J Davies, J A Cotton, J D Kirwan, E C Teeling, S J Rossiter. Heredity (Edinb) 2012
65
100

The evolution of echolocation in bats.
Gareth Jones, Emma C Teeling. Trends Ecol Evol 2006
185
100


edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
50


KEGG: kyoto encyclopedia of genes and genomes.
M Kanehisa, S Goto. Nucleic Acids Res 2000
50

Evaluation of gene-expression clustering via mutual information distance measure.
Ido Priness, Oded Maimon, Irad Ben-Gal. BMC Bioinformatics 2007
71
50

The evolution of gene expression levels in mammalian organs.
David Brawand, Magali Soumillon, Anamaria Necsulea, Philippe Julien, Gábor Csárdi, Patrick Harrigan, Manuela Weier, Angélica Liechti, Ayinuer Aximu-Petri, Martin Kircher,[...]. Nature 2011
705
50


Prestin and high frequency hearing in mammals.
Stephen J Rossiter, Shuyi Zhang, Yang Liu. Commun Integr Biol 2011
13
50


EXPANDER--an integrative program suite for microarray data analysis.
Ron Shamir, Adi Maron-Katz, Amos Tanay, Chaim Linhart, Israel Steinfeld, Roded Sharan, Yosef Shiloh, Ran Elkon. BMC Bioinformatics 2005
208
50

Optimal localization by pointing off axis.
Yossi Yovel, Ben Falk, Cynthia F Moss, Nachum Ulanovsky. Science 2010
69
50


Bats, clocks, and rocks: diversification patterns in Chiroptera.
Kate E Jones, Olaf R P Bininda-Emonds, John L Gittleman. Evolution 2005
69
50


The Gene Ontology (GO) database and informatics resource.
M A Harris, J Clark, A Ireland, J Lomax, M Ashburner, R Foulger, K Eilbeck, S Lewis, B Marshall, C Mungall,[...]. Nucleic Acids Res 2004
50

WormBase: a multi-species resource for nematode biology and genomics.
Todd W Harris, Nansheng Chen, Fiona Cunningham, Marcela Tello-Ruiz, Igor Antoshechkin, Carol Bastiani, Tamberlyn Bieri, Darin Blasiar, Keith Bradnam, Juancarlos Chan,[...]. Nucleic Acids Res 2004
467
50

A molecular phylogeny for bats illuminates biogeography and the fossil record.
Emma C Teeling, Mark S Springer, Ole Madsen, Paul Bates, Stephen J O'brien, William J Murphy. Science 2005
537
50

Evolution at two levels: on genes and form.
Sean B Carroll. PLoS Biol 2005
543
50


RNA-Seq: a revolutionary tool for transcriptomics.
Zhong Wang, Mark Gerstein, Michael Snyder. Nat Rev Genet 2009
50


A fractal approach to dynamic inference and distribution analysis.
Marieke M J W van Rooij, Bertha A Nash, Srinivasan Rajaraman, John G Holden. Front Physiol 2013
129
50

A bony connection signals laryngeal echolocation in bats.
Nina Veselka, David D McErlain, David W Holdsworth, Judith L Eger, Rethy K Chhem, Matthew J Mason, Kirsty L Brain, Paul A Faure, M Brock Fenton. Nature 2010
46
50

Expander: from expression microarrays to networks and functions.
Igor Ulitsky, Adi Maron-Katz, Seagull Shavit, Dorit Sagir, Chaim Linhart, Ran Elkon, Amos Tanay, Roded Sharan, Yosef Shiloh, Ron Shamir. Nat Protoc 2010
146
50



Bats regulate biosonar based on the availability of visual information.
Sasha Danilovich, Anand Krishnan, Wu-Jung Lee, Ivailo Borrisov, Ofri Eitan, Gabor Kosa, Cynthia F Moss, Yossi Yovel. Curr Biol 2015
26
50


Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
50

RNA-Seq: a method for comprehensive transcriptome analysis.
Ugrappa Nagalakshmi, Karl Waern, Michael Snyder. Curr Protoc Mol Biol 2010
146
50

The voltage-gated potassium channel subfamily KQT member 4 (KCNQ4) displays parallel evolution in echolocating bats.
Yang Liu, Naijian Han, Lucía F Franchini, Huihui Xu, Francisco Pisciottano, Ana Belén Elgoyhen, Koilmani Emmanuvel Rajan, Shuyi Zhang. Mol Biol Evol 2012
34
50

Comparing sequences without using alignments: application to HIV/SIV subtyping.
Gilles Didier, Laurent Debomy, Maude Pupin, Ming Zhang, Alexander Grossmann, Claudine Devauchelle, Ivan Laprevotte. BMC Bioinformatics 2007
155
50

Comparative RNA sequencing reveals substantial genetic variation in endangered primates.
George H Perry, Páll Melsted, John C Marioni, Ying Wang, Russell Bainer, Joseph K Pickrell, Katelyn Michelini, Sarah Zehr, Anne D Yoder, Matthew Stephens,[...]. Genome Res 2012
85
50

Three-dimensional auditory localization in the echolocating bat.
Melville J Wohlgemuth, Jinhong Luo, Cynthia F Moss. Curr Opin Neurobiol 2016
23
50


A novel method for prokaryotic promoter prediction based on DNA stability.
Aditi Kanhere, Manju Bansal. BMC Bioinformatics 2005
191
50

Using DNA microarrays to study gene expression in closely related species.
Alicia Oshlack, Adrien E Chabot, Gordon K Smyth, Yoav Gilad. Bioinformatics 2007
50
50

Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.
Jeff W Chou, Tong Zhou, William K Kaufmann, Richard S Paules, Pierre R Bushel. BMC Bioinformatics 2007
37
50


Evolutionary aspects of bat echolocation.
G Neuweiler. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2003
51
50

Echolocation signal structure in the Megachiropteran bat Rousettus aegyptiacus Geoffroy 1810.
Richard A Holland, Dean A Waters, Jeremy M V Rayner. J Exp Biol 2004
33
50

Auditory fovea and Doppler shift compensation: adaptations for flutter detection in echolocating bats using CF-FM signals.
Hans-Ulrich Schnitzler, Annette Denzinger. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2011
65
50

What the bat's voice tells the bat's brain.
Nachum Ulanovsky, Cynthia F Moss. Proc Natl Acad Sci U S A 2008
74
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.