A citation-based method for searching scientific literature

Lisa Nivison-Smith, Pauline Khoo, Monica L Acosta, Michael Kalloniatis. Exp Eye Res 2018
Times Cited: 3







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Microarray analysis of gene expression in fibrovascular membranes excised from patients with proliferative diabetic retinopathy.
Keijiro Ishikawa, Shigeo Yoshida, Yoshiyuki Kobayashi, Yedi Zhou, Takahito Nakama, Shintaro Nakao, Yukio Sassa, Yuji Oshima, Hiroaki Niiro, Koichi Akashi,[...]. Invest Ophthalmol Vis Sci 2015
38
33


MCM: one ring to rule them all.
Tom D Deegan, John F X Diffley. Curr Opin Struct Biol 2016
86
33

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
33

KEGG: kyoto encyclopedia of genes and genomes.
M Kanehisa, S Goto. Nucleic Acids Res 2000
33



Endogenous brain protection: what the cerebral transcriptome teaches us.
K E M Cox-Limpens, A W D Gavilanes, L J I Zimmermann, J S H Vles. Brain Res 2014
21
33

Pre- and post-conditional inhibition of prolyl-4-hydroxylase domain enzymes protects the heart from an ischemic insult.
Melanie Vogler, Anke Zieseniss, Amke R Hesse, Elif Levent, Malte Tiburcy, Eva Heinze, Nicolai Burzlaff, Gunnar Schley, Kai Uwe Eckardt, Carsten Willam,[...]. Pflugers Arch 2015
29
33

Activation of autophagy and Akt/CREB signaling play an equivalent role in the neuroprotective effect of rapamycin in neonatal hypoxia-ischemia.
Silvia Carloni, Silvia Girelli, Claudia Scopa, Giuseppe Buonocore, Mariangela Longini, Walter Balduini. Autophagy 2010
188
33

Endothelial protein kinase MAP4K4 promotes vascular inflammation and atherosclerosis.
Rachel J Roth Flach, Athanasia Skoura, Anouch Matevossian, Laura V Danai, Wei Zheng, Christian Cortes, Samit K Bhattacharya, Myriam Aouadi, Nana Hagan, Joseph C Yawe,[...]. Nat Commun 2015
48
33

Retinal ischemia and reperfusion causes capillary degeneration: similarities to diabetes.
Ling Zheng, Bendi Gong, Denise A Hatala, Timothy S Kern. Invest Ophthalmol Vis Sci 2007
192
33

Identifying Significantly Impacted Pathways and Putative Mechanisms with iPathwayGuide.
Sidra Ahsan, Sorin Drăghici. Curr Protoc Bioinformatics 2017
35
33


Hypoxia-ischemia induces DNA synthesis without cell proliferation in dying neurons in adult rodent brain.
Chia-Yi Kuan, Aryn J Schloemer, Aigang Lu, Kevin A Burns, Wei-Lan Weng, Michael T Williams, Kenneth I Strauss, Charles V Vorhees, Richard A Flavell, Roger J Davis,[...]. J Neurosci 2004
229
33

Sevoflurane Postconditioning Reduces Apoptosis by Activating the JAK-STAT Pathway After Transient Global Cerebral Ischemia in Rats.
Hyun-Chang Kim, Eugene Kim, Jung Il Bae, Kook Hyun Lee, Young-Tae Jeon, Jung-Won Hwang, Young-Jin Lim, Seong-Won Min, Hee-Pyoung Park. J Neurosurg Anesthesiol 2017
41
33

Genome-wide characterization of the routes to pluripotency.
Samer M I Hussein, Mira C Puri, Peter D Tonge, Marco Benevento, Andrew J Corso, Jennifer L Clancy, Rowland Mosbergen, Mira Li, Dong-Sung Lee, Nicole Cloonan,[...]. Nature 2014
131
33

Angiopoietin-4 increases permeability of blood vessels and promotes lymphatic dilation.
Cristina T Kesler, Ethel R Pereira, Cheryl H Cui, Gregory M Nelson, David J Masuck, James W Baish, Timothy P Padera. FASEB J 2015
10
33

Survival kinases in ischemic preconditioning and postconditioning.
Derek J Hausenloy, Derek M Yellon. Cardiovasc Res 2006
389
33

A systems biology approach for pathway level analysis.
Sorin Draghici, Purvesh Khatri, Adi Laurentiu Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero. Genome Res 2007
748
33

Depletion of minichromosome maintenance protein 5 in the zebrafish retina causes cell-cycle defect and apoptosis.
Soojin Ryu, Jochen Holzschuh, Simone Erhardt, Anne-Kathrin Ettl, Wolfgang Driever. Proc Natl Acad Sci U S A 2005
68
33

Retinal neuroprotection against ischemia-reperfusion damage induced by postconditioning.
Diego C Fernandez, Melina P Bordone, Mónica S Chianelli, Ruth E Rosenstein. Invest Ophthalmol Vis Sci 2009
34
33


Expression of cell cycle-related genes in dying cells in retinal ischemic injury.
S Kuroiwa, N Katai, H Shibuki, T Kurokawa, J Umihira, T Nikaido, K Kametani, N Yoshimura. Invest Ophthalmol Vis Sci 1998
78
33

Deleterious role of TNF-alpha in retinal ischemia-reperfusion injury.
Samuel Berger, Sean I Savitz, Sheetal Nijhawan, Manjeet Singh, Joel David, Pearl S Rosenbaum, Daniel M Rosenbaum. Invest Ophthalmol Vis Sci 2008
50
33

Cell-specific caspase expression by different neuronal phenotypes in transient retinal ischemia.
M Singh, S I Savitz, R Hoque, G Gupta, S Roth, P S Rosenbaum, D M Rosenbaum. J Neurochem 2001
84
33

Characterization of the pituitary tumor transforming gene 1 knockout mouse retina.
Rosanne M Yetemian, Cheryl M Craft. Neurochem Res 2011
4
33


Regulating RISK: a role for JAK-STAT signaling in postconditioning?
Michael D Goodman, Sheryl E Koch, Geraldine A Fuller-Bicer, Karyn L Butler. Am J Physiol Heart Circ Physiol 2008
72
33

RNA-Seq: a revolutionary tool for transcriptomics.
Zhong Wang, Mark Gerstein, Michael Snyder. Nat Rev Genet 2009
33

HIF-1alpha binding to VHL is regulated by stimulus-sensitive proline hydroxylation.
F Yu, S B White, Q Zhao, F S Lee. Proc Natl Acad Sci U S A 2001
591
33

Pulse inhibition of histone deacetylases induces complete resistance to oxidative death in cortical neurons without toxicity and reveals a role for cytoplasmic p21(waf1/cip1) in cell cycle-independent neuroprotection.
Brett Langley, Melissa A D'Annibale, Kyungsun Suh, Issam Ayoub, Aaron Tolhurst, Birgül Bastan, Lichuan Yang, Brian Ko, Marc Fisher, Sunghee Cho,[...]. J Neurosci 2008
126
33

Mitogen-activated protein kinase kinase kinase kinase 4 as a putative effector of Rap2 to activate the c-Jun N-terminal kinase.
Noriko Machida, Masato Umikawa, Kimiko Takei, Nariko Sakima, Bat-Erdene Myagmar, Kiyohito Taira, Hiroshi Uezato, Yoshihide Ogawa, Ken-Ichi Kariya. J Biol Chem 2004
87
33

Intracellular Fibroblast Growth Factor 14: Emerging Risk Factor for Brain Disorders.
Jessica Di Re, Paul A Wadsworth, Fernanda Laezza. Front Cell Neurosci 2017
38
33

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance.
Charles Wang, Binsheng Gong, Pierre R Bushel, Jean Thierry-Mieg, Danielle Thierry-Mieg, Joshua Xu, Hong Fang, Huixiao Hong, Jie Shen, Zhenqiang Su,[...]. Nat Biotechnol 2014
269
33

Retinal regeneration in birds and mice.
Matthew S Wilken, Thomas A Reh. Curr Opin Genet Dev 2016
33
33


Angiopoietin-like 4 is a potent angiogenic factor and a novel therapeutic target for patients with proliferative diabetic retinopathy.
Savalan Babapoor-Farrokhran, Kathleen Jee, Brooks Puchner, Syed Junaid Hassan, Xiaoban Xin, Murilo Rodrigues, Fabiana Kashiwabuchi, Tao Ma, Ke Hu, Monika Deshpande,[...]. Proc Natl Acad Sci U S A 2015
63
33

Age-related decline in BubR1 impairs adult hippocampal neurogenesis.
Zhongxi Yang, Heechul Jun, Chan-Ii Choi, Ki Hyun Yoo, Chang Hoon Cho, Syed Mohammed Qasim Hussaini, Ambrosia J Simmons, Seonhee Kim, Jan M van Deursen, Darren J Baker,[...]. Aging Cell 2017
22
33


FGF14 is a regulator of KCNQ2/3 channels.
Juan Lorenzo Pablo, Geoffrey S Pitt. Proc Natl Acad Sci U S A 2017
24
33

Neuronal cell cycle: the neuron itself and its circumstances.
José M Frade, María C Ovejero-Benito. Cell Cycle 2015
114
33

FunRich: An open access standalone functional enrichment and interaction network analysis tool.
Mohashin Pathan, Shivakumar Keerthikumar, Ching-Seng Ang, Lahiru Gangoda, Camelia Y J Quek, Nicholas A Williamson, Dmitri Mouradov, Oliver M Sieber, Richard J Simpson, Agus Salim,[...]. Proteomics 2015
645
33

Tumor progression locus 2 (Tpl2) kinase promotes chemokine receptor expression and macrophage migration during acute inflammation.
Sean M Rowley, Teneema Kuriakose, Lee M Dockery, Thi Tran-Nguyen, Aaron D Gingerich, Lai Wei, Wendy T Watford. J Biol Chem 2014
22
33

Ischemic preconditioning attenuates apoptotic cell death in the rat retina.
Cheng Zhang, Daniel M Rosenbaum, Afzhal R Shaikh, Qing Li, Pearl S Rosenbaum, Daniel J Pelham, Steven Roth. Invest Ophthalmol Vis Sci 2002
81
33

The devil in the details of RNA-seq.
Anton Kratz, Piero Carninci. Nat Biotechnol 2014
20
33

Transcriptome profiling of the rat retina after optic nerve transection.
Masayuki Yasuda, Yuji Tanaka, Kazuko Omodaka, Koji M Nishiguchi, Orie Nakamura, Satoru Tsuda, Toru Nakazawa. Sci Rep 2016
19
33

Pituitary tumor-transforming gene 1 regulates the patterning of retinal mosaics.
Patrick W Keeley, Cuiqi Zhou, Lu Lu, Robert W Williams, Shlomo Melmed, Benjamin E Reese. Proc Natl Acad Sci U S A 2014
19
33

Role of JAK-STAT pathway in reducing cardiomyocytes hypoxia/reoxygenation injury induced by S1P postconditioning.
Yuqing Wang, Dongfei Wang, Lizhi Zhang, Fangyu Ye, Mengmeng Li, Ke Wen. Eur J Pharmacol 2016
12
33

Prolyl hydroxylase inhibition during hyperoxia prevents oxygen-induced retinopathy in the rat 50/10 model.
George Trichonas, Tamara J Lee, George Hoppe, John Au, Jonathan E Sears. Invest Ophthalmol Vis Sci 2013
20
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.