A citation-based method for searching scientific literature

Emily Welby, Jorn Lakowski, Valentina Di Foggia, Dimitri Budinger, Anai Gonzalez-Cordero, Aaron T L Lun, Michael Epstein, Aara Patel, Elisa Cuevas, Kamil Kruczek, Arifa Naeem, Federico Minneci, Mike Hubank, David T Jones, John C Marioni, Robin R Ali, Jane C Sowden. Stem Cell Reports 2017
Times Cited: 54







List of co-cited articles
784 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Self-formation of optic cups and storable stratified neural retina from human ESCs.
Tokushige Nakano, Satoshi Ando, Nozomu Takata, Masako Kawada, Keiko Muguruma, Kiyotoshi Sekiguchi, Koichi Saito, Shigenobu Yonemura, Mototsugu Eiraku, Yoshiki Sasai. Cell Stem Cell 2012
792
66

Generation of three-dimensional retinal tissue with functional photoreceptors from human iPSCs.
Xiufeng Zhong, Christian Gutierrez, Tian Xue, Christopher Hampton, M Natalia Vergara, Li-Hui Cao, Ann Peters, Tea Soon Park, Elias T Zambidis, Jason S Meyer,[...]. Nat Commun 2014
462
62

Recapitulation of Human Retinal Development from Human Pluripotent Stem Cells Generates Transplantable Populations of Cone Photoreceptors.
Anai Gonzalez-Cordero, Kamil Kruczek, Arifa Naeem, Milan Fernando, Magdalena Kloc, Joana Ribeiro, Debbie Goh, Yanai Duran, Samuel J I Blackford, Laura Abelleira-Hervas,[...]. Stem Cell Reports 2017
105
44

Optic vesicle-like structures derived from human pluripotent stem cells facilitate a customized approach to retinal disease treatment.
Jason S Meyer, Sara E Howden, Kyle A Wallace, Amelia D Verhoeven, Lynda S Wright, Elizabeth E Capowski, Isabel Pinilla, Jessica M Martin, Shulan Tian, Ron Stewart,[...]. Stem Cells 2011
281
40

Molecular Anatomy of the Developing Human Retina.
Akina Hoshino, Rinki Ratnapriya, Matthew J Brooks, Vijender Chaitankar, Matthew S Wilken, Chi Zhang, Margaret R Starostik, Linn Gieser, Anna La Torre, Mario Nishio,[...]. Dev Cell 2017
103
40

Photoreceptor Outer Segment-like Structures in Long-Term 3D Retinas from Human Pluripotent Stem Cells.
Karl J Wahlin, Julien A Maruotti, Srinivasa R Sripathi, John Ball, Juan M Angueyra, Catherine Kim, Rhonda Grebe, Wei Li, Bryan W Jones, Donald J Zack. Sci Rep 2017
119
37

Thyroid hormone signaling specifies cone subtypes in human retinal organoids.
Kiara C Eldred, Sarah E Hadyniak, Katarzyna A Hussey, Boris Brenerman, Ping-Wu Zhang, Xitiz Chamling, Valentin M Sluch, Derek S Welsbie, Samer Hattar, James Taylor,[...]. Science 2018
88
37

Modeling early retinal development with human embryonic and induced pluripotent stem cells.
Jason S Meyer, Rebecca L Shearer, Elizabeth E Capowski, Lynda S Wright, Kyle A Wallace, Erin L McMillan, Su-Chun Zhang, David M Gamm. Proc Natl Acad Sci U S A 2009
401
35

Self-organizing optic-cup morphogenesis in three-dimensional culture.
Mototsugu Eiraku, Nozomu Takata, Hiroki Ishibashi, Masako Kawada, Eriko Sakakura, Satoru Okuda, Kiyotoshi Sekiguchi, Taiji Adachi, Yoshiki Sasai. Nature 2011
35

Identification and Correction of Mechanisms Underlying Inherited Blindness in Human iPSC-Derived Optic Cups.
David A Parfitt, Amelia Lane, Conor M Ramsden, Amanda-Jayne F Carr, Peter M Munro, Katarina Jovanovic, Nele Schwarz, Naheed Kanuga, Manickam N Muthiah, Sarah Hull,[...]. Cell Stem Cell 2016
181
33

Reproducibility and staging of 3D human retinal organoids across multiple pluripotent stem cell lines.
Elizabeth E Capowski, Kayvan Samimi, Steven J Mayerl, M Joseph Phillips, Isabel Pinilla, Sara E Howden, Jishnu Saha, Alex D Jansen, Kimberly L Edwards, Lindsey D Jager,[...]. Development 2019
92
33

From confluent human iPS cells to self-forming neural retina and retinal pigmented epithelium.
Sacha Reichman, Angélique Terray, Amélie Slembrouck, Céline Nanteau, Gaël Orieux, Walter Habeler, Emeline F Nandrot, José-Alain Sahel, Christelle Monville, Olivier Goureau. Proc Natl Acad Sci U S A 2014
158
31

Generation of Storable Retinal Organoids and Retinal Pigmented Epithelium from Adherent Human iPS Cells in Xeno-Free and Feeder-Free Conditions.
Sacha Reichman, Amélie Slembrouck, Giuliana Gagliardi, Antoine Chaffiol, Angélique Terray, Céline Nanteau, Anais Potey, Morgane Belle, Oriane Rabesandratana, Jens Duebel,[...]. Stem Cells 2017
104
31

Generation of a ciliary margin-like stem cell niche from self-organizing human retinal tissue.
Atsushi Kuwahara, Chikafumi Ozone, Tokushige Nakano, Koichi Saito, Mototsugu Eiraku, Yoshiki Sasai. Nat Commun 2015
155
31

Transcriptome Dynamics of Developing Photoreceptors in Three-Dimensional Retina Cultures Recapitulates Temporal Sequence of Human Cone and Rod Differentiation Revealing Cell Surface Markers and Gene Networks.
Rossukon Kaewkhaw, Koray Dogan Kaya, Matthew Brooks, Kohei Homma, Jizhong Zou, Vijender Chaitankar, Mahendra Rao, Anand Swaroop. Stem Cells 2015
97
31

Generation, transcriptome profiling, and functional validation of cone-rich human retinal organoids.
Sangbae Kim, Albert Lowe, Rachayata Dharmat, Seunghoon Lee, Leah A Owen, Jun Wang, Akbar Shakoor, Yumei Li, Denise J Morgan, Andre A Hejazi,[...]. Proc Natl Acad Sci U S A 2019
57
31

Donor and host photoreceptors engage in material transfer following transplantation of post-mitotic photoreceptor precursors.
R A Pearson, A Gonzalez-Cordero, E L West, J R Ribeiro, N Aghaizu, D Goh, R D Sampson, A Georgiadis, P V Waldron, Y Duran,[...]. Nat Commun 2016
160
29

Accelerated and Improved Differentiation of Retinal Organoids from Pluripotent Stem Cells in Rotating-Wall Vessel Bioreactors.
Tyler DiStefano, Holly Yu Chen, Christopher Panebianco, Koray Dogan Kaya, Matthew J Brooks, Linn Gieser, Nicole Y Morgan, Tom Pohida, Anand Swaroop. Stem Cell Reports 2018
86
29

Isolation of Human Photoreceptor Precursors via a Cell Surface Marker Panel from Stem Cell-Derived Retinal Organoids and Fetal Retinae.
Jörn Lakowski, Emily Welby, Dimitri Budinger, Fabiana Di Marco, Valentina Di Foggia, James W B Bainbridge, Kyle Wallace, David M Gamm, Robin R Ali, Jane C Sowden. Stem Cells 2018
48
33

Efficient generation of retinal progenitor cells from human embryonic stem cells.
Deepak A Lamba, Mike O Karl, Carol B Ware, Thomas A Reh. Proc Natl Acad Sci U S A 2006
459
27

Transplantation of human embryonic stem cell-derived retinal tissue in two primate models of retinal degeneration.
Hiroshi Shirai, Michiko Mandai, Keizo Matsushita, Atsushi Kuwahara, Shigenobu Yonemura, Tokushige Nakano, Juthaporn Assawachananont, Toru Kimura, Koichi Saito, Hiroko Terasaki,[...]. Proc Natl Acad Sci U S A 2016
168
27

Retinal transplantation of photoreceptors results in donor-host cytoplasmic exchange.
Tiago Santos-Ferreira, Sílvia Llonch, Oliver Borsch, Kai Postel, Jochen Haas, Marius Ader. Nat Commun 2016
151
27

Gene Correction Reverses Ciliopathy and Photoreceptor Loss in iPSC-Derived Retinal Organoids from Retinitis Pigmentosa Patients.
Wen-Li Deng, Mei-Ling Gao, Xin-Lan Lei, Ji-Neng Lv, Huan Zhao, Kai-Wen He, Xi-Xi Xia, Ling-Yun Li, Yu-Chen Chen, Yan-Ping Li,[...]. Stem Cell Reports 2018
103
27

Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda, Shinya Yamanaka. Cell 2007
25

Transplanted photoreceptor precursors transfer proteins to host photoreceptors by a mechanism of cytoplasmic fusion.
Mandeep S Singh, Jasmin Balmer, Alun R Barnard, Sher A Aslam, Daniela Moralli, Catherine M Green, Alona Barnea-Cramer, Isabel Duncan, Robert E MacLaren. Nat Commun 2016
114
25

A Novel Approach to Single Cell RNA-Sequence Analysis Facilitates In Silico Gene Reporting of Human Pluripotent Stem Cell-Derived Retinal Cell Types.
M Joseph Phillips, Peng Jiang, Sara Howden, Patrick Barney, Jee Min, Nathaniel W York, Li-Fang Chu, Elizabeth E Capowski, Abigail Cash, Shivani Jain,[...]. Stem Cells 2018
31
45

Characterization and Transplantation of CD73-Positive Photoreceptors Isolated from Human iPSC-Derived Retinal Organoids.
Giuliana Gagliardi, Karim Ben M'Barek, Antoine Chaffiol, Amélie Slembrouck-Brec, Jean-Baptiste Conart, Céline Nanteau, Oriane Rabesandratana, José-Alain Sahel, Jens Duebel, Gael Orieux,[...]. Stem Cell Reports 2018
66
25

Retinal repair by transplantation of photoreceptor precursors.
R E MacLaren, R A Pearson, A MacNeil, R H Douglas, T E Salt, M Akimoto, A Swaroop, J C Sowden, R R Ali. Nature 2006
743
24

Toward the generation of rod and cone photoreceptors from mouse, monkey and human embryonic stem cells.
Fumitaka Osakada, Hanako Ikeda, Michiko Mandai, Takafumi Wataya, Kiichi Watanabe, Nagahisa Yoshimura, Akinori Akaike, Yoshiki Sasai, Masayo Takahashi. Nat Biotechnol 2008
413
24

IGF-1 Signaling Plays an Important Role in the Formation of Three-Dimensional Laminated Neural Retina and Other Ocular Structures From Human Embryonic Stem Cells.
Carla B Mellough, Joseph Collin, Mahmoud Khazim, Kathryn White, Evelyne Sernagor, David H W Steel, Majlinda Lako. Stem Cells 2015
80
24


Use of bioreactors for culturing human retinal organoids improves photoreceptor yields.
Patrick Ovando-Roche, Emma L West, Matthew J Branch, Robert D Sampson, Milan Fernando, Peter Munro, Anastasios Georgiadis, Matteo Rizzi, Magdalena Kloc, Arifa Naeem,[...]. Stem Cell Res Ther 2018
47
27

Human-Induced Pluripotent Stem Cells Generate Light Responsive Retinal Organoids with Variable and Nutrient-Dependent Efficiency.
Dean Hallam, Gerrit Hilgen, Birthe Dorgau, Lili Zhu, Min Yu, Sanja Bojic, Philip Hewitt, Michael Schmitt, Marianne Uteng, Stefan Kustermann,[...]. Stem Cells 2018
84
24

Deconstructing Retinal Organoids: Single Cell RNA-Seq Reveals the Cellular Components of Human Pluripotent Stem Cell-Derived Retina.
Joseph Collin, Rachel Queen, Darin Zerti, Birthe Dorgau, Rafiqul Hussain, Jonathan Coxhead, Simon Cockell, Majlinda Lako. Stem Cells 2019
47
27

Restoration of vision after transplantation of photoreceptors.
R A Pearson, A C Barber, M Rizzi, C Hippert, T Xue, E L West, Y Duran, A J Smith, J Z Chuang, S A Azam,[...]. Nature 2012
319
22

Photoreceptor precursors derived from three-dimensional embryonic stem cell cultures integrate and mature within adult degenerate retina.
Anai Gonzalez-Cordero, Emma L West, Rachael A Pearson, Yanai Duran, Livia S Carvalho, Colin J Chu, Arifa Naeem, Samuel J I Blackford, Anastasios Georgiadis, Jorn Lakowski,[...]. Nat Biotechnol 2013
243
22

Retinal Organoids from Pluripotent Stem Cells Efficiently Recapitulate Retinogenesis.
Manuela Völkner, Marlen Zschätzsch, Maria Rostovskaya, Rupert W Overall, Volker Busskamp, Konstantinos Anastassiadis, Mike O Karl. Stem Cell Reports 2016
139
22

Transplanted hESC-Derived Retina Organoid Sheets Differentiate, Integrate, and Improve Visual Function in Retinal Degenerate Rats.
Bryce T McLelland, Bin Lin, Anuradha Mathur, Robert B Aramant, Biju B Thomas, Gabriel Nistor, Hans S Keirstead, Magdalene J Seiler. Invest Ophthalmol Vis Sci 2018
56
22

Organoid technology for retinal repair.
Sílvia Llonch, Madalena Carido, Marius Ader. Dev Biol 2018
79
22

An integrated transcriptional analysis of the developing human retina.
Carla B Mellough, Roman Bauer, Joseph Collin, Birthe Dorgau, Darin Zerti, David W P Dolan, Carl M Jones, Osagie G Izuogu, Min Yu, Dean Hallam,[...]. Development 2019
38
31

Modeling human retinal development with patient-specific induced pluripotent stem cells reveals multiple roles for visual system homeobox 2.
M Joseph Phillips, Enio T Perez, Jessica M Martin, Samantha T Reshel, Kyle A Wallace, Elizabeth E Capowski, Ruchira Singh, Lynda S Wright, Eric M Clark, Patrick M Barney,[...]. Stem Cells 2014
73
20

iPSC-Derived Retina Transplants Improve Vision in rd1 End-Stage Retinal-Degeneration Mice.
Michiko Mandai, Momo Fujii, Tomoyo Hashiguchi, Genshiro A Sunagawa, Shin-ichiro Ito, Jianan Sun, Jun Kaneko, Junki Sho, Chikako Yamada, Masayo Takahashi. Stem Cell Reports 2017
79
20

Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina.
Anand Swaroop, Douglas Kim, Douglas Forrest. Nat Rev Neurosci 2010
340
20

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
20

The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis.
Issam Aldiri, Beisi Xu, Lu Wang, Xiang Chen, Daniel Hiler, Lyra Griffiths, Marc Valentine, Abbas Shirinifard, Suresh Thiagarajan, Andras Sablauer,[...]. Neuron 2017
117
20

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina.
Yi-Rong Peng, Karthik Shekhar, Wenjun Yan, Dustin Herrmann, Anna Sappington, Gregory S Bryman, Tavé van Zyl, Michael Tri H Do, Aviv Regev, Joshua R Sanes. Cell 2019
153
20

Dissecting the transcriptome landscape of the human fetal neural retina and retinal pigment epithelium by single-cell RNA-seq analysis.
Yuqiong Hu, Xiaoye Wang, Boqiang Hu, Yunuo Mao, Yidong Chen, Liying Yan, Jun Yong, Ji Dong, Yuan Wei, Wei Wang,[...]. PLoS Biol 2019
46
23

Transplantation of Photoreceptor Precursors Isolated via a Cell Surface Biomarker Panel From Embryonic Stem Cell-Derived Self-Forming Retina.
Jorn Lakowski, Anai Gonzalez-Cordero, Emma L West, Ya-Ting Han, Emily Welby, Arifa Naeem, Samuel J I Blackford, James W B Bainbridge, Rachael A Pearson, Robin R Ali,[...]. Stem Cells 2015
79
18

Repair of the degenerate retina by photoreceptor transplantation.
Amanda C Barber, Claire Hippert, Yanai Duran, Emma L West, James W B Bainbridge, Katherine Warre-Cornish, Ulrich F O Luhmann, Jorn Lakowski, Jane C Sowden, Robin R Ali,[...]. Proc Natl Acad Sci U S A 2013
181
18

Human embryonic stem cell-derived retinal pigment epithelium in patients with age-related macular degeneration and Stargardt's macular dystrophy: follow-up of two open-label phase 1/2 studies.
Steven D Schwartz, Carl D Regillo, Byron L Lam, Dean Eliott, Philip J Rosenfeld, Ninel Z Gregori, Jean-Pierre Hubschman, Janet L Davis, Gad Heilwell, Marc Spirn,[...]. Lancet 2015
699
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.