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List of co-cited articles
17 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny.
Andreas Rechtsteiner, Sevinc Ercan, Teruaki Takasaki, Taryn M Phippen, Thea A Egelhofer, Wenchao Wang, Hiroshi Kimura, Jason D Lieb, Susan Strome. PLoS Genet 2010
133
100

The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors.
Michelle M Kudron, Alec Victorsen, Louis Gevirtzman, LaDeana W Hillier, William W Fisher, Dionne Vafeados, Matt Kirkey, Ann S Hammonds, Jeffery Gersch, Haneen Ammouri,[...]. Genetics 2018
76
100

X-chromosome silencing in the germline of C. elegans.
William G Kelly, Christine E Schaner, Abby F Dernburg, Min-Ho Lee, Stuart K Kim, Anne M Villeneuve, Valerie Reinke. Development 2002
236
100



3' UTRs are the primary regulators of gene expression in the C. elegans germline.
Christopher Merritt, Dominique Rasoloson, Darae Ko, Geraldine Seydoux. Curr Biol 2008
264
66

Direct conversion of C. elegans germ cells into specific neuron types.
Baris Tursun, Tulsi Patel, Paschalis Kratsios, Oliver Hobert. Science 2011
159
66

Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans.
Valerie Reinke, Inigo San Gil, Samuel Ward, Keith Kazmer. Development 2004
334
66



Less is more: specification of the germline by transcriptional repression.
Akira Nakamura, Geraldine Seydoux. Development 2008
76
66

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
66

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
66

Germ-granule components prevent somatic development in the C. elegans germline.
Dustin L Updike, Andrew Kekūpa'a Knutson, Thea A Egelhofer, Anne C Campbell, Susan Strome. Curr Biol 2014
78
66

A new dataset of spermatogenic vs. oogenic transcriptomes in the nematode Caenorhabditis elegans.
Marco A Ortiz, Daniel Noble, Elena P Sorokin, Judith Kimble. G3 (Bethesda) 2014
92
66

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks.
Cole Trapnell, Adam Roberts, Loyal Goff, Geo Pertea, Daehwan Kim, David R Kelley, Harold Pimentel, Steven L Salzberg, John L Rinn, Lior Pachter. Nat Protoc 2012
66

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
66

Histone H3K27ac separates active from poised enhancers and predicts developmental state.
Menno P Creyghton, Albert W Cheng, G Grant Welstead, Tristan Kooistra, Bryce W Carey, Eveline J Steine, Jacob Hanna, Michael A Lodato, Garrett M Frampton, Phillip A Sharp,[...]. Proc Natl Acad Sci U S A 2010
33


Broad chromosomal domains of histone modification patterns in C. elegans.
Tao Liu, Andreas Rechtsteiner, Thea A Egelhofer, Anne Vielle, Isabel Latorre, Ming-Sin Cheung, Sevinc Ercan, Kohta Ikegami, Morten Jensen, Paulina Kolasinska-Zwierz,[...]. Genome Res 2011
193
33

DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing.
Kaifu Chen, Yuanxin Xi, Xuewen Pan, Zhaoyu Li, Klaus Kaestner, Jessica Tyler, Sharon Dent, Xiangwei He, Wei Li. Genome Res 2013
218
33

Combinatorial patterns of histone acetylations and methylations in the human genome.
Zhibin Wang, Chongzhi Zang, Jeffrey A Rosenfeld, Dustin E Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q Zhang,[...]. Nat Genet 2008
33

Analysis of C. elegans intestinal gene expression and polyadenylation by fluorescence-activated nuclei sorting and 3'-end-seq.
Simon Haenni, Zhe Ji, Mainul Hoque, Nigel Rust, Helen Sharpe, Ralf Eberhard, Cathy Browne, Michael O Hengartner, Jane Mellor, Bin Tian,[...]. Nucleic Acids Res 2012
48
33

Somatic misexpression of germline P granules and enhanced RNA interference in retinoblastoma pathway mutants.
Duo Wang, Scott Kennedy, Darryl Conte, John K Kim, Harrison W Gabel, Ravi S Kamath, Craig C Mello, Gary Ruvkun. Nature 2005
205
33


Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling.
Florian A Steiner, Paul B Talbert, Sivakanthan Kasinathan, Roger B Deal, Steven Henikoff. Genome Res 2012
97
33

Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response.
Mei Zhong, Wei Niu, Zhi John Lu, Mihail Sarov, John I Murray, Judith Janette, Debasish Raha, Karyn L Sheaffer, Hugo Y K Lam, Elicia Preston,[...]. PLoS Genet 2010
131
33


PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans.
Pedro J Batista, J Graham Ruby, Julie M Claycomb, Rosaria Chiang, Noah Fahlgren, Kristin D Kasschau, Daniel A Chaves, Weifeng Gu, Jessica J Vasale, Shenghua Duan,[...]. Mol Cell 2008
373
33

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
33

A nuclear Argonaute promotes multigenerational epigenetic inheritance and germline immortality.
Bethany A Buckley, Kirk B Burkhart, Sam Guoping Gu, George Spracklin, Aaron Kershner, Heidi Fritz, Judith Kimble, Andrew Fire, Scott Kennedy. Nature 2012
311
33


Trans-generational epigenetic regulation of C. elegans primordial germ cells.
Hirofumi Furuhashi, Teruaki Takasaki, Andreas Rechtsteiner, Tengguo Li, Hiroshi Kimura, Paula M Checchi, Susan Strome, William G Kelly. Epigenetics Chromatin 2010
77
33


Histone modifications at human enhancers reflect global cell-type-specific gene expression.
Nathaniel D Heintzman, Gary C Hon, R David Hawkins, Pouya Kheradpour, Alexander Stark, Lindsey F Harp, Zhen Ye, Leonard K Lee, Rhona K Stuart, Christina W Ching,[...]. Nature 2009
33

synMuv B proteins antagonize germline fate in the intestine and ensure C. elegans survival.
Lisa N Petrella, Wenchao Wang, Caroline A Spike, Andreas Rechtsteiner, Valerie Reinke, Susan Strome. Development 2011
64
33

The C. elegans SNAPc component SNPC-4 coats piRNA domains and is globally required for piRNA abundance.
Dionna M Kasper, Guilin Wang, Kathryn E Gardner, Timothy G Johnstone, Valerie Reinke. Dev Cell 2014
28
33


Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans.
Eric L Greer, Travis J Maures, Duygu Ucar, Anna G Hauswirth, Elena Mancini, Jana P Lim, Bérénice A Benayoun, Yang Shi, Anne Brunet. Nature 2011
390
33

Tissue-specific direct targets of Caenorhabditis elegans Rb/E2F dictate distinct somatic and germline programs.
Michelle Kudron, Wei Niu, Zhi Lu, Guilin Wang, Mark Gerstein, Michael Snyder, Valerie Reinke. Genome Biol 2013
36
33

A genome-scale resource for in vivo tag-based protein function exploration in C. elegans.
Mihail Sarov, John I Murray, Kristin Schanze, Andrei Pozniakovski, Wei Niu, Karolin Angermann, Susanne Hasse, Michaela Rupprecht, Elisabeth Vinis, Matthew Tinney,[...]. Cell 2012
170
33

Unique patterns of trimethylation of histone H3 lysine 4 are prone to changes during aging in Caenorhabditis elegans somatic cells.
Mintie Pu, Minghui Wang, Wenke Wang, Satheeja Santhi Velayudhan, Siu Sylvia Lee. PLoS Genet 2018
17
33


The putative chemoreceptor families of C. elegans.
Hugh M Robertson, James H Thomas. WormBook 2006
77
33

Translational regulators maintain totipotency in the Caenorhabditis elegans germline.
Rafal Ciosk, Michael DePalma, James R Priess. Science 2006
131
33

Repression of somatic cell fate in the germline.
Valérie J Robert, Steve Garvis, Francesca Palladino. Cell Mol Life Sci 2015
15
33


Creation of low-copy integrated transgenic lines in Caenorhabditis elegans.
V Praitis, E Casey, D Collar, J Austin. Genetics 2001
689
33

Germ Granules Prevent Accumulation of Somatic Transcripts in the Adult Caenorhabditis elegans Germline.
Andrew Kekūpa'a Knutson, Thea Egelhofer, Andreas Rechtsteiner, Susan Strome. Genetics 2017
37
33

Isolated C. elegans germ nuclei exhibit distinct genomic profiles of histone modification and gene expression.
Mei Han, Guifeng Wei, Catherine E McManus, LaDeana W Hillier, Valerie Reinke. BMC Genomics 2019
11
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.