A citation-based method for searching scientific literature

Lisa Maier, Athanasios Typas. Curr Opin Microbiol 2017
Times Cited: 24







List of co-cited articles
158 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.
Kristoffer Forslund, Falk Hildebrand, Trine Nielsen, Gwen Falony, Emmanuelle Le Chatelier, Shinichi Sunagawa, Edi Prifti, Sara Vieira-Silva, Valborg Gudmundsdottir, Helle K Pedersen,[...]. Nature 2015
909
37

Extensive impact of non-antibiotic drugs on human gut bacteria.
Lisa Maier, Mihaela Pruteanu, Michael Kuhn, Georg Zeller, Anja Telzerow, Exene Erin Anderson, Ana Rita Brochado, Keith Conrad Fernandez, Hitomi Dose, Hirotada Mori,[...]. Nature 2018
651
33

Diet rapidly and reproducibly alters the human gut microbiome.
Lawrence A David, Corinne F Maurice, Rachel N Carmody, David B Gootenberg, Julie E Button, Benjamin E Wolfe, Alisha V Ling, A Sloan Devlin, Yug Varma, Michael A Fischbach,[...]. Nature 2014
29

Proton pump inhibitors affect the gut microbiome.
Floris Imhann, Marc Jan Bonder, Arnau Vich Vila, Jingyuan Fu, Zlatan Mujagic, Lisa Vork, Ettje F Tigchelaar, Soesma A Jankipersadsing, Maria Carmen Cenit, Hermie J M Harmsen,[...]. Gut 2016
480
25


Linking long-term dietary patterns with gut microbial enterotypes.
Gary D Wu, Jun Chen, Christian Hoffmann, Kyle Bittinger, Ying-Yu Chen, Sue A Keilbaugh, Meenakshi Bewtra, Dan Knights, William A Walters, Rob Knight,[...]. Science 2011
25

Metformin alters the gut microbiome of individuals with treatment-naive type 2 diabetes, contributing to the therapeutic effects of the drug.
Hao Wu, Eduardo Esteve, Valentina Tremaroli, Muhammad Tanweer Khan, Robert Caesar, Louise Mannerås-Holm, Marcus Ståhlman, Lisa M Olsson, Matteo Serino, Mercè Planas-Fèlix,[...]. Nat Med 2017
577
20

Gut microbiota associations with common diseases and prescription medications in a population-based cohort.
Matthew A Jackson, Serena Verdi, Maria-Emanuela Maxan, Cheol Min Shin, Jonas Zierer, Ruth C E Bowyer, Tiphaine Martin, Frances M K Williams, Cristina Menni, Jordana T Bell,[...]. Nat Commun 2018
184
20

Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota.
Marie Vétizou, Jonathan M Pitt, Romain Daillère, Patricia Lepage, Nadine Waldschmitt, Caroline Flament, Sylvie Rusakiewicz, Bertrand Routy, Maria P Roberti, Connie P M Duong,[...]. Science 2015
16

Environment dominates over host genetics in shaping human gut microbiota.
Daphna Rothschild, Omer Weissbrod, Elad Barkan, Alexander Kurilshikov, Tal Korem, David Zeevi, Paul I Costea, Anastasia Godneva, Iris N Kalka, Noam Bar,[...]. Nature 2018
850
16

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies.
Melanie Tramontano, Sergej Andrejev, Mihaela Pruteanu, Martina Klünemann, Michael Kuhn, Marco Galardini, Paula Jouhten, Aleksej Zelezniak, Georg Zeller, Peer Bork,[...]. Nat Microbiol 2018
78
16

The resilience of the intestinal microbiota influences health and disease.
Felix Sommer, Jacqueline Moltzau Anderson, Richa Bharti, Jeroen Raes, Philip Rosenstiel. Nat Rev Microbiol 2017
291
16

Population-level analysis of gut microbiome variation.
Gwen Falony, Marie Joossens, Sara Vieira-Silva, Jun Wang, Youssef Darzi, Karoline Faust, Alexander Kurilshikov, Marc Jan Bonder, Mireia Valles-Colomer, Doris Vandeputte,[...]. Science 2016
881
16

A human gut microbial gene catalogue established by metagenomic sequencing.
Junjie Qin, Ruiqiang Li, Jeroen Raes, Manimozhiyan Arumugam, Kristoffer Solvsten Burgdorf, Chaysavanh Manichanh, Trine Nielsen, Nicolas Pons, Florence Levenez, Takuji Yamada,[...]. Nature 2010
16

Expert consensus document: The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on the definition and scope of prebiotics.
Glenn R Gibson, Robert Hutkins, Mary Ellen Sanders, Susan L Prescott, Raylene A Reimer, Seppo J Salminen, Karen Scott, Catherine Stanton, Kelly S Swanson, Patrice D Cani,[...]. Nat Rev Gastroenterol Hepatol 2017
16

Host-Microbe Co-metabolism Dictates Cancer Drug Efficacy in C. elegans.
Timothy A Scott, Leonor M Quintaneiro, Povilas Norvaisas, Prudence P Lui, Matthew P Wilson, Kit-Yi Leung, Lucia Herrera-Dominguez, Sonia Sudiwala, Alberto Pessia, Peter T Clayton,[...]. Cell 2017
103
16

Mapping human microbiome drug metabolism by gut bacteria and their genes.
Michael Zimmermann, Maria Zimmermann-Kogadeeva, Rebekka Wegmann, Andrew L Goodman. Nature 2019
245
16

Systematic review: human gut dysbiosis induced by non-antibiotic prescription medications.
Q Le Bastard, G A Al-Ghalith, M Grégoire, G Chapelet, F Javaudin, E Dailly, E Batard, D Knights, E Montassier. Aliment Pharmacol Ther 2018
99
12

How informative is the mouse for human gut microbiota research?
Thi Loan Anh Nguyen, Sara Vieira-Silva, Adrian Liston, Jeroen Raes. Dis Model Mech 2015
584
12

Bacterial Metabolism Affects the C. elegans Response to Cancer Chemotherapeutics.
Aurian P García-González, Ashlyn D Ritter, Shaleen Shrestha, Erik C Andersen, L Safak Yilmaz, Albertha J M Walhout. Cell 2017
97
12

Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy.
Ayelet Sivan, Leticia Corrales, Nathaniel Hubert, Jason B Williams, Keston Aquino-Michaels, Zachary M Earley, Franco W Benyamin, Yuk Man Lei, Bana Jabri, Maria-Luisa Alegre,[...]. Science 2015
12

Diversity of the human intestinal microbial flora.
Paul B Eckburg, Elisabeth M Bik, Charles N Bernstein, Elizabeth Purdom, Les Dethlefsen, Michael Sargent, Steven R Gill, Karen E Nelson, David A Relman. Science 2005
12

The long-term stability of the human gut microbiota.
Jeremiah J Faith, Janaki L Guruge, Mark Charbonneau, Sathish Subramanian, Henning Seedorf, Andrew L Goodman, Jose C Clemente, Rob Knight, Andrew C Heath, Rudolph L Leibel,[...]. Science 2013
971
12

Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors.
Bertrand Routy, Emmanuelle Le Chatelier, Lisa Derosa, Connie P M Duong, Maryam Tidjani Alou, Romain Daillère, Aurélie Fluckiger, Meriem Messaoudene, Conrad Rauber, Maria P Roberti,[...]. Science 2018
12

Succession of microbial consortia in the developing infant gut microbiome.
Jeremy E Koenig, Aymé Spor, Nicholas Scalfone, Ashwana D Fricker, Jesse Stombaugh, Rob Knight, Largus T Angenent, Ruth E Ley. Proc Natl Acad Sci U S A 2011
12

Expert consensus document. The International Scientific Association for Probiotics and Prebiotics consensus statement on the scope and appropriate use of the term probiotic.
Colin Hill, Francisco Guarner, Gregor Reid, Glenn R Gibson, Daniel J Merenstein, Bruno Pot, Lorenzo Morelli, Roberto Berni Canani, Harry J Flint, Seppo Salminen,[...]. Nat Rev Gastroenterol Hepatol 2014
12

Dietary intervention impact on gut microbial gene richness.
Aurélie Cotillard, Sean P Kennedy, Ling Chun Kong, Edi Prifti, Nicolas Pons, Emmanuelle Le Chatelier, Mathieu Almeida, Benoit Quinquis, Florence Levenez, Nathalie Galleron,[...]. Nature 2013
890
12

Diet-microbiota interactions as moderators of human metabolism.
Justin L Sonnenburg, Fredrik Bäckhed. Nature 2016
819
12

Alterations in fecal microbiota composition by probiotic supplementation in healthy adults: a systematic review of randomized controlled trials.
Nadja B Kristensen, Thomas Bryrup, Kristine H Allin, Trine Nielsen, Tue H Hansen, Oluf Pedersen. Genome Med 2016
228
12

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.
Morgan G I Langille, Jesse Zaneveld, J Gregory Caporaso, Daniel McDonald, Dan Knights, Joshua A Reyes, Jose C Clemente, Deron E Burkepile, Rebecca L Vega Thurber, Rob Knight,[...]. Nat Biotechnol 2013
12

QIIME allows analysis of high-throughput community sequencing data.
J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D Bushman, Elizabeth K Costello, Noah Fierer, Antonio Gonzalez Peña, Julia K Goodrich, Jeffrey I Gordon,[...]. Nat Methods 2010
12

Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features.
Niv Zmora, Gili Zilberman-Schapira, Jotham Suez, Uria Mor, Mally Dori-Bachash, Stavros Bashiardes, Eran Kotler, Maya Zur, Dana Regev-Lehavi, Rotem Ben-Zeev Brik,[...]. Cell 2018
473
12

Gut microbiota composition correlates with diet and health in the elderly.
Marcus J Claesson, Ian B Jeffery, Susana Conde, Susan E Power, Eibhlís M O'Connor, Siobhán Cusack, Hugh M B Harris, Mairead Coakley, Bhuvaneswari Lakshminarayanan, Orla O'Sullivan,[...]. Nature 2012
12

A new genomic blueprint of the human gut microbiota.
Alexandre Almeida, Alex L Mitchell, Miguel Boland, Samuel C Forster, Gregory B Gloor, Aleksandra Tarkowska, Trevor D Lawley, Robert D Finn. Nature 2019
344
12

DADA2: High-resolution sample inference from Illumina amplicon data.
Benjamin J Callahan, Paul J McMurdie, Michael J Rosen, Andrew W Han, Amy Jo A Johnson, Susan P Holmes. Nat Methods 2016
12

Microbiome-wide association studies link dynamic microbial consortia to disease.
Jack A Gilbert, Robert A Quinn, Justine Debelius, Zhenjiang Z Xu, James Morton, Neha Garg, Janet K Jansson, Pieter C Dorrestein, Rob Knight. Nature 2016
325
8

The effect of host genetics on the gut microbiome.
Marc Jan Bonder, Alexander Kurilshikov, Ettje F Tigchelaar, Zlatan Mujagic, Floris Imhann, Arnau Vich Vila, Patrick Deelen, Tommi Vatanen, Melanie Schirmer, Sanne P Smeekens,[...]. Nat Genet 2016
336
8

Association of host genome with intestinal microbial composition in a large healthy cohort.
Williams Turpin, Osvaldo Espin-Garcia, Wei Xu, Mark S Silverberg, David Kevans, Michelle I Smith, David S Guttman, Anne Griffiths, Remo Panaccione, Anthony Otley,[...]. Nat Genet 2016
215
8

Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania.
Samuel A Smits, Jeff Leach, Erica D Sonnenburg, Carlos G Gonzalez, Joshua S Lichtman, Gregor Reid, Rob Knight, Alphaxard Manjurano, John Changalucha, Joshua E Elias,[...]. Science 2017
300
8

The commensal microbiome is associated with anti-PD-1 efficacy in metastatic melanoma patients.
Vyara Matson, Jessica Fessler, Riyue Bao, Tara Chongsuwat, Yuanyuan Zha, Maria-Luisa Alegre, Jason J Luke, Thomas F Gajewski. Science 2018
957
8

A microfluidics-based in vitro model of the gastrointestinal human-microbe interface.
Pranjul Shah, Joëlle V Fritz, Enrico Glaab, Mahesh S Desai, Kacy Greenhalgh, Audrey Frachet, Magdalena Niegowska, Matthew Estes, Christian Jäger, Carole Seguin-Devaux,[...]. Nat Commun 2016
221
8

Human gut microbes impact host serum metabolome and insulin sensitivity.
Helle Krogh Pedersen, Valborg Gudmundsdottir, Henrik Bjørn Nielsen, Tuulia Hyotylainen, Trine Nielsen, Benjamin A H Jensen, Kristoffer Forslund, Falk Hildebrand, Edi Prifti, Gwen Falony,[...]. Nature 2016
775
8

Interactions between the microbiota and the immune system.
Lora V Hooper, Dan R Littman, Andrew J Macpherson. Science 2012
8

Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota.
Jun Wang, Louise B Thingholm, Jurgita Skiecevičienė, Philipp Rausch, Martin Kummen, Johannes R Hov, Frauke Degenhardt, Femke-Anouska Heinsen, Malte C Rühlemann, Silke Szymczak,[...]. Nat Genet 2016
297
8

Genetic Determinants of the Gut Microbiome in UK Twins.
Julia K Goodrich, Emily R Davenport, Michelle Beaumont, Matthew A Jackson, Rob Knight, Carole Ober, Tim D Spector, Jordana T Bell, Andrew G Clark, Ruth E Ley. Cell Host Microbe 2016
425
8

Microbial strain-level population structure and genetic diversity from metagenomes.
Duy Tin Truong, Adrian Tett, Edoardo Pasolli, Curtis Huttenhower, Nicola Segata. Genome Res 2017
241
8


Prebiotic inulin-type fructans induce specific changes in the human gut microbiota.
Doris Vandeputte, Gwen Falony, Sara Vieira-Silva, Jun Wang, Manuela Sailer, Stephan Theis, Kristin Verbeke, Jeroen Raes. Gut 2017
156
8

The effect of age and non-steroidal anti-inflammatory drugs on human intestinal microbiota composition.
Harri Mäkivuokko, Kirsti Tiihonen, Soile Tynkkynen, Lars Paulin, Nina Rautonen. Br J Nutr 2010
134
8

Personalized Nutrition by Prediction of Glycemic Responses.
David Zeevi, Tal Korem, Niv Zmora, David Israeli, Daphna Rothschild, Adina Weinberger, Orly Ben-Yacov, Dar Lador, Tali Avnit-Sagi, Maya Lotan-Pompan,[...]. Cell 2015
906
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.