A citation-based method for searching scientific literature

Joshua C Denny, Sara L Van Driest, Wei-Qi Wei, Dan M Roden. Clin Pharmacol Ther 2018
Times Cited: 21







List of co-cited articles
67 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease.
Justin Lamb, Emily D Crawford, David Peck, Joshua W Modell, Irene C Blat, Matthew J Wrobel, Jim Lerner, Jean-Philippe Brunet, Aravind Subramanian, Kenneth N Ross,[...]. Science 2006
19

A survey of current trends in computational drug repositioning.
Jiao Li, Si Zheng, Bin Chen, Atul J Butte, S Joshua Swamidass, Zhiyong Lu. Brief Bioinform 2016
238
19

Drug repurposing: progress, challenges and recommendations.
Sudeep Pushpakom, Francesco Iorio, Patrick A Eyers, K Jane Escott, Shirley Hopper, Andrew Wells, Andrew Doig, Tim Guilliams, Joanna Latimer, Christine McNamee,[...]. Nat Rev Drug Discov 2019
956
19

Million Veteran Program: A mega-biobank to study genetic influences on health and disease.
John Michael Gaziano, John Concato, Mary Brophy, Louis Fiore, Saiju Pyarajan, James Breeling, Stacey Whitbourne, Jennifer Deen, Colleen Shannon, Donald Humphries,[...]. J Clin Epidemiol 2016
295
14

Review of Drug Repositioning Approaches and Resources.
Hanqing Xue, Jie Li, Haozhe Xie, Yadong Wang. Int J Biol Sci 2018
159
14

The support of human genetic evidence for approved drug indications.
Matthew R Nelson, Hannah Tipney, Jeffery L Painter, Judong Shen, Paola Nicoletti, Yufeng Shen, Aris Floratos, Pak Chung Sham, Mulin Jun Li, Junwen Wang,[...]. Nat Genet 2015
541
14

Drug repurposing from the perspective of pharmaceutical companies.
Y Cha, T Erez, I J Reynolds, D Kumar, J Ross, G Koytiger, R Kusko, B Zeskind, S Risso, E Kagan,[...]. Br J Pharmacol 2018
119
14

Predicting the Future - Big Data, Machine Learning, and Clinical Medicine.
Ziad Obermeyer, Ezekiel J Emanuel. N Engl J Med 2016
779
9

Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.
Daniel J Brat, Roel G W Verhaak, Kenneth D Aldape, W K Alfred Yung, Sofie R Salama, Lee A D Cooper, Esther Rheinbay, C Ryan Miller, Mark Vitucci, Olena Morozova,[...]. N Engl J Med 2015
9


The ChEMBL database in 2017.
Anna Gaulton, Anne Hersey, Michał Nowotka, A Patrícia Bento, Jon Chambers, David Mendez, Prudence Mutowo, Francis Atkinson, Louisa J Bellis, Elena Cibrián-Uhalte,[...]. Nucleic Acids Res 2017
781
9

Deep learning.
Yann LeCun, Yoshua Bengio, Geoffrey Hinton. Nature 2015
9

Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia.
Timothy J Ley, Christopher Miller, Li Ding, Benjamin J Raphael, Andrew J Mungall, A Gordon Robertson, Katherine Hoadley, Timothy J Triche, Peter W Laird, Jack D Baty,[...]. N Engl J Med 2013
9

Clinical development success rates for investigational drugs.
Michael Hay, David W Thomas, John L Craighead, Celia Economides, Jesse Rosenthal. Nat Biotechnol 2014
9

Methods for building QSARs.
James Devillers. Methods Mol Biol 2013
20
10

Use of big data in drug development for precision medicine.
Rosa S Kim, Nicolas Goossens, Yujin Hoshida. Expert Rev Precis Med Drug Dev 2016
14
14

The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future.
Omri Gottesman, Helena Kuivaniemi, Gerard Tromp, W Andrew Faucett, Rongling Li, Teri A Manolio, Saskia C Sanderson, Joseph Kannry, Randi Zinberg, Melissa A Basford,[...]. Genet Med 2013
404
9

The FAIR Guiding Principles for scientific data management and stewardship.
Mark D Wilkinson, Michel Dumontier, I Jsbrand Jan Aalbersberg, Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, Jan-Willem Boiten, Luiz Bonino da Silva Santos, Philip E Bourne,[...]. Sci Data 2016
9

Public Attitudes toward Consent and Data Sharing in Biobank Research: A Large Multi-site Experimental Survey in the US.
Saskia C Sanderson, Kyle B Brothers, Nathaniel D Mercaldo, Ellen Wright Clayton, Armand H Matheny Antommaria, Sharon A Aufox, Murray H Brilliant, Diego Campos, David S Carrell, John Connolly,[...]. Am J Hum Genet 2017
95
9

A new initiative on precision medicine.
Francis S Collins, Harold Varmus. N Engl J Med 2015
9

Pharmacovigilance using clinical notes.
P LePendu, S V Iyer, A Bauer-Mehren, R Harpaz, J M Mortensen, T Podchiyska, T A Ferris, N H Shah. Clin Pharmacol Ther 2013
93
9

The use of a DNA biobank linked to electronic medical records to characterize pharmacogenomic predictors of tacrolimus dose requirement in kidney transplant recipients.
Kelly A Birdwell, Ben Grady, Leena Choi, Hua Xu, Aihua Bian, Josh C Denny, Min Jiang, Gayle Vranic, Melissa Basford, James D Cowan,[...]. Pharmacogenet Genomics 2012
70
9

Predicting clopidogrel response using DNA samples linked to an electronic health record.
J T Delaney, A H Ramirez, E Bowton, J M Pulley, M A Basford, J S Schildcrout, Y Shi, R Zink, M Oetjens, H Xu,[...]. Clin Pharmacol Ther 2012
73
9

Phenome-wide association studies on a quantitative trait: application to TPMT enzyme activity and thiopurine therapy in pharmacogenomics.
Antoine Neuraz, Laurent Chouchana, Georgia Malamut, Christine Le Beller, Denis Roche, Philippe Beaune, Patrice Degoulet, Anita Burgun, Marie-Anne Loriot, Paul Avillach. PLoS Comput Biol 2013
37
9

Predicting warfarin dosage in European-Americans and African-Americans using DNA samples linked to an electronic health record.
Andrea H Ramirez, Yaping Shi, Jonathan S Schildcrout, Jessica T Delaney, Hua Xu, Matthew T Oetjens, Rebecca L Zuvich, Melissa A Basford, Erica Bowton, Min Jiang,[...]. Pharmacogenomics 2012
70
9


Cloud computing for genomic data analysis and collaboration.
Ben Langmead, Abhinav Nellore. Nat Rev Genet 2018
64
9

Urbanization and the gut microbiota in health and inflammatory bowel disease.
Tao Zuo, Michael A Kamm, Jean-Frédéric Colombel, Siew C Ng. Nat Rev Gastroenterol Hepatol 2018
87
9

A method for systematic discovery of adverse drug events from clinical notes.
Guan Wang, Kenneth Jung, Rainer Winnenburg, Nigam H Shah. J Am Med Inform Assoc 2015
30
9

Big data in gastroenterology research.
Robert M Genta, Amnon Sonnenberg. Nat Rev Gastroenterol Hepatol 2014
18
11

Secukinumab, a human anti-IL-17A monoclonal antibody, for moderate to severe Crohn's disease: unexpected results of a randomised, double-blind placebo-controlled trial.
Wolfgang Hueber, Bruce E Sands, Steve Lewitzky, Marc Vandemeulebroecke, Walter Reinisch, Peter D R Higgins, Jan Wehkamp, Brian G Feagan, Michael D Yao, Marek Karczewski,[...]. Gut 2012
901
9


Large sample size, wide variant spectrum, and advanced machine-learning technique boost risk prediction for inflammatory bowel disease.
Zhi Wei, Wei Wang, Jonathan Bradfield, Jin Li, Christopher Cardinale, Edward Frackelton, Cecilia Kim, Frank Mentch, Kristel Van Steen, Peter M Visscher,[...]. Am J Hum Genet 2013
85
9

A review of approaches to identifying patient phenotype cohorts using electronic health records.
Chaitanya Shivade, Preethi Raghavan, Eric Fosler-Lussier, Peter J Embi, Noemie Elhadad, Stephen B Johnson, Albert M Lai. J Am Med Inform Assoc 2014
213
9


A Systematic Review of Techniques and Sources of Big Data in the Healthcare Sector.
Susel Góngora Alonso, Isabel de la Torre Díez, Joel J P C Rodrigues, Sofiane Hamrioui, Miguel López-Coronado. J Med Syst 2017
16
12

Changing R&D models in research-based pharmaceutical companies.
Alexander Schuhmacher, Oliver Gassmann, Markus Hinder. J Transl Med 2016
94
9

Text mining for adverse drug events: the promise, challenges, and state of the art.
Rave Harpaz, Alison Callahan, Suzanne Tamang, Yen Low, David Odgers, Sam Finlayson, Kenneth Jung, Paea LePendu, Nigam H Shah. Drug Saf 2014
82
9

Machine Learning Algorithms for Objective Remission and Clinical Outcomes with Thiopurines.
Akbar K Waljee, Kay Sauder, Anand Patel, Sandeep Segar, Boang Liu, Yiwei Zhang, Ji Zhu, Ryan W Stidham, Ulysses Balis, Peter D R Higgins. J Crohns Colitis 2017
33
9

Topiramate use does not reduce flares of inflammatory bowel disease.
Seth D Crockett, Robin Schectman, Til Stürmer, Michael D Kappelman. Dig Dis Sci 2014
13
15

Genetics of inflammatory bowel disease: beyond NOD2.
Maša Umićević Mirkov, Bram Verstockt, Isabelle Cleynen. Lancet Gastroenterol Hepatol 2017
57
9

Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease.
Joel T Dudley, Marina Sirota, Mohan Shenoy, Reetesh K Pai, Silke Roedder, Annie P Chiang, Alex A Morgan, Minnie M Sarwal, Pankaj Jay Pasricha, Atul J Butte. Sci Transl Med 2011
363
9

Predicting Hospitalization and Outpatient Corticosteroid Use in Inflammatory Bowel Disease Patients Using Machine Learning.
Akbar K Waljee, Rachel Lipson, Wyndy L Wiitala, Yiwei Zhang, Boang Liu, Ji Zhu, Beth Wallace, Shail M Govani, Ryan W Stidham, Rodney Hayward,[...]. Inflamm Bowel Dis 2017
39
9

The Association Between Arthralgia and Vedolizumab Using Natural Language Processing.
Tianrun Cai, Tzu-Chieh Lin, Allison Bond, Jie Huang, Gwendolyn Kane-Wanger, Andrew Cagan, Shawn N Murphy, Ashwin N Ananthakrishnan, Katherine P Liao. Inflamm Bowel Dis 2018
11
18

Predicting corticosteroid-free endoscopic remission with vedolizumab in ulcerative colitis.
A K Waljee, B Liu, K Sauder, J Zhu, S M Govani, R W Stidham, P D R Higgins. Aliment Pharmacol Ther 2018
31
9

Automated identification of surveillance colonoscopy in inflammatory bowel disease using natural language processing.
Jason K Hou, Mimi Chang, Thien Nguyen, Jennifer R Kramer, Peter Richardson, Shubhada Sansgiry, Leonard W D'Avolio, Hashem B El-Serag. Dig Dis Sci 2013
22
9

Incorporation of pharmacogenomics into routine clinical practice: the Clinical Pharmacogenetics Implementation Consortium (CPIC) guideline development process.
Kelly E Caudle, Teri E Klein, James M Hoffman, Daniel J Muller, Michelle Whirl-Carrillo, Li Gong, Ellen M McDonagh, Katrin Sangkuhl, Caroline F Thorn, Matthias Schwab,[...]. Curr Drug Metab 2014
219
9

A genome-wide association study of heparin-induced thrombocytopenia using an electronic medical record.
Jason H Karnes, Robert M Cronin, Jerome Rollin, Alexander Teumer, Claire Pouplard, Christian M Shaffer, Carmelo Blanquicett, Erica A Bowton, James D Cowan, Jonathan D Mosley,[...]. Thromb Haemost 2015
39
9

Opportunities for drug repositioning from phenome-wide association studies.
Majid Rastegar-Mojarad, Zhan Ye, Jill M Kolesar, Scott J Hebbring, Simon M Lin. Nat Biotechnol 2015
72
9

Use of genome-wide association studies for drug repositioning.
Philippe Sanseau, Pankaj Agarwal, Michael R Barnes, Tomi Pastinen, J Brent Richards, Lon R Cardon, Vincent Mooser. Nat Biotechnol 2012
224
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.