A citation-based method for searching scientific literature

Rajula Elango, Ziwei Sheng, Jessica Jackson, Jenna DeCata, Younis Ibrahim, Nhung T Pham, Diana H Liang, Cynthia J Sakofsky, Alessandro Vindigni, Kirill S Lobachev, Grzegorz Ira, Anna Malkova. Nat Commun 2017
Times Cited: 32







List of co-cited articles
481 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Migrating bubble during break-induced replication drives conservative DNA synthesis.
Natalie Saini, Sreejith Ramakrishnan, Rajula Elango, Sandeep Ayyar, Yu Zhang, Angela Deem, Grzegorz Ira, James E Haber, Kirill S Lobachev, Anna Malkova. Nature 2013
220
34

Break-induced replication and telomerase-independent telomere maintenance require Pol32.
John R Lydeard, Suvi Jain, Miyuki Yamaguchi, James E Haber. Nature 2007
347
31

Pif1 helicase and Polδ promote recombination-coupled DNA synthesis via bubble migration.
Marenda A Wilson, YoungHo Kwon, Yuanyuan Xu, Woo-Hyun Chung, Peter Chi, Hengyao Niu, Ryan Mayle, Xuefeng Chen, Anna Malkova, Patrick Sung,[...]. Nature 2013
204
31

Srs2 and Sgs1-Top3 suppress crossovers during double-strand break repair in yeast.
Grzegorz Ira, Anna Malkova, Giordano Liberi, Marco Foiani, James E Haber. Cell 2003
454
31

DNA helicase Srs2 disrupts the Rad51 presynaptic filament.
Lumir Krejci, Stephen Van Komen, Ying Li, Jana Villemain, Mothe Sreedhar Reddy, Hannah Klein, Thomas Ellenberger, Patrick Sung. Nature 2003
479
31

The Srs2 helicase prevents recombination by disrupting Rad51 nucleoprotein filaments.
Xavier Veaute, Josette Jeusset, Christine Soustelle, Stephen C Kowalczykowski, Eric Le Cam, Francis Fabre. Nature 2003
465
31


Multi-invasions Are Recombination Byproducts that Induce Chromosomal Rearrangements.
Aurèle Piazza, William Douglass Wright, Wolf-Dietrich Heyer. Cell 2017
60
28

DNA REPAIR. Mus81 and converging forks limit the mutagenicity of replication fork breakage.
Ryan Mayle, Ian M Campbell, Christine R Beck, Yang Yu, Marenda Wilson, Chad A Shaw, Lotte Bjergbaek, James R Lupski, Grzegorz Ira. Science 2015
128
28


Template switching during break-induced replication.
Catherine E Smith, Bertrand Llorente, Lorraine S Symington. Nature 2007
246
25

Defective break-induced replication leads to half-crossovers in Saccharomyces cerevisiae.
Angela Deem, Krista Barker, Kelly Vanhulle, Brandon Downing, Alexandra Vayl, Anna Malkova. Genetics 2008
76
25

Break-induced replication is a source of mutation clusters underlying kataegis.
Cynthia J Sakofsky, Steven A Roberts, Ewa Malc, Piotr A Mieczkowski, Michael A Resnick, Dmitry A Gordenin, Anna Malkova. Cell Rep 2014
107
25

Rad51 paralogues Rad55-Rad57 balance the antirecombinase Srs2 in Rad51 filament formation.
Jie Liu, Ludovic Renault, Xavier Veaute, Francis Fabre, Henning Stahlberg, Wolf-Dietrich Heyer. Nature 2011
138
25

Dissociation of Rad51 Presynaptic Complexes and Heteroduplex DNA Joints by Tandem Assemblies of Srs2.
Kyle Kaniecki, Luisina De Tullio, Bryan Gibb, Youngho Kwon, Patrick Sung, Eric C Greene. Cell Rep 2017
30
23

Localization of recombination proteins and Srs2 reveals anti-recombinase function in vivo.
Rebecca C Burgess, Michael Lisby, Veronika Altmannova, Lumir Krejci, Patrick Sung, Rodney Rothstein. J Cell Biol 2009
63
21

Sources of DNA double-strand breaks and models of recombinational DNA repair.
Anuja Mehta, James E Haber. Cold Spring Harb Perspect Biol 2014
383
21

Mechanisms and regulation of mitotic recombination in Saccharomyces cerevisiae.
Lorraine S Symington, Rodney Rothstein, Michael Lisby. Genetics 2014
217
21

Break-induced replication occurs by conservative DNA synthesis.
Roberto A Donnianni, Lorraine S Symington. Proc Natl Acad Sci U S A 2013
120
21

Break-induced replication is highly inaccurate.
Angela Deem, Andrea Keszthelyi, Tiffany Blackgrove, Alexandra Vayl, Barbara Coffey, Ruchi Mathur, Andrei Chabes, Anna Malkova. PLoS Biol 2011
191
21

RAD52 Facilitates Mitotic DNA Synthesis Following Replication Stress.
Rahul Bhowmick, Sheroy Minocherhomji, Ian D Hickson. Mol Cell 2016
191
21

Mechanism of eukaryotic homologous recombination.
Joseph San Filippo, Patrick Sung, Hannah Klein. Annu Rev Biochem 2008
21

Srs2 promotes synthesis-dependent strand annealing by disrupting DNA polymerase δ-extending D-loops.
Jie Liu, Christopher Ede, William D Wright, Steven K Gore, Shirin S Jenkins, Bret D Freudenthal, M Todd Washington, Xavier Veaute, Wolf-Dietrich Heyer. Elife 2017
38
21

Yeast Mph1 helicase dissociates Rad51-made D-loops: implications for crossover control in mitotic recombination.
Rohit Prakash, Dominik Satory, Eloïse Dray, Almas Papusha, Jürgen Scheller, Wilfried Kramer, Lumir Krejci, Hannah Klein, James E Haber, Patrick Sung,[...]. Genes Dev 2009
190
21

Yeast Srs2 Helicase Promotes Redistribution of Single-Stranded DNA-Bound RPA and Rad52 in Homologous Recombination Regulation.
Luisina De Tullio, Kyle Kaniecki, Youngho Kwon, J Brooks Crickard, Patrick Sung, Eric C Greene. Cell Rep 2017
29
20

Template switching during break-induced replication is promoted by the Mph1 helicase in Saccharomyces cerevisiae.
Anamarija Stafa, Roberto A Donnianni, Leonid A Timashev, Alicia F Lam, Lorraine S Symington. Genetics 2014
43
18


RAD51-dependent break-induced replication differs in kinetics and checkpoint responses from RAD51-mediated gene conversion.
Anna Malkova, Maria L Naylor, Miyuki Yamaguchi, Grzegorz Ira, James E Haber. Mol Cell Biol 2005
128
18


Regulation of recombination and genomic maintenance.
Wolf-Dietrich Heyer. Cold Spring Harb Perspect Biol 2015
65
18


Chromosome rearrangements via template switching between diverged repeated sequences.
Ranjith P Anand, Olga Tsaponina, Patricia W Greenwell, Cheng-Sheng Lee, Wei Du, Thomas D Petes, James E Haber. Genes Dev 2014
71
18

The Shu complex, which contains Rad51 paralogues, promotes DNA repair through inhibition of the Srs2 anti-recombinase.
Kara A Bernstein, Robert J D Reid, Ivana Sunjevaric, Kimberly Demuth, Rebecca C Burgess, Rodney Rothstein. Mol Biol Cell 2011
61
18

Srs2: the "Odd-Job Man" in DNA repair.
Victoria Marini, Lumir Krejci. DNA Repair (Amst) 2010
58
18

An Overview of the Molecular Mechanisms of Recombinational DNA Repair.
Stephen C Kowalczykowski. Cold Spring Harb Perspect Biol 2015
249
18



Break-induced DNA replication.
Ranjith P Anand, Susan T Lovett, James E Haber. Cold Spring Harb Perspect Biol 2013
151
15

Mechanisms underlying structural variant formation in genomic disorders.
Claudia M B Carvalho, James R Lupski. Nat Rev Genet 2016
292
15

Sgs1 helicase and two nucleases Dna2 and Exo1 resect DNA double-strand break ends.
Zhu Zhu, Woo-Hyun Chung, Eun Yong Shim, Sang Eun Lee, Grzegorz Ira. Cell 2008
752
15

Break induced replication in eukaryotes: mechanisms, functions, and consequences.
Cynthia J Sakofsky, Anna Malkova. Crit Rev Biochem Mol Biol 2017
83
15


Translesion Polymerases Drive Microhomology-Mediated Break-Induced Replication Leading to Complex Chromosomal Rearrangements.
Cynthia J Sakofsky, Sandeep Ayyar, Angela K Deem, Woo-Hyun Chung, Grzegorz Ira, Anna Malkova. Mol Cell 2015
71
15


Replication stress activates DNA repair synthesis in mitosis.
Sheroy Minocherhomji, Songmin Ying, Victoria A Bjerregaard, Sara Bursomanno, Aiste Aleliunaite, Wei Wu, Hocine W Mankouri, Huahao Shen, Ying Liu, Ian D Hickson. Nature 2015
301
15

A recombination execution checkpoint regulates the choice of homologous recombination pathway during DNA double-strand break repair.
Suvi Jain, Neal Sugawara, John Lydeard, Moreshwar Vaze, Nicolas Tanguy Le Gac, James E Haber. Genes Dev 2009
99
15

Break-induced telomere synthesis underlies alternative telomere maintenance.
Robert L Dilley, Priyanka Verma, Nam Woo Cho, Harrison D Winters, Anne R Wondisford, Roger A Greenberg. Nature 2016
218
15

Mammalian RAD52 Functions in Break-Induced Replication Repair of Collapsed DNA Replication Forks.
Sotirios K Sotiriou, Irene Kamileri, Natalia Lugli, Konstantinos Evangelou, Caterina Da-Ré, Florian Huber, Laura Padayachy, Sebastien Tardy, Noemie L Nicati, Samia Barriot,[...]. Mol Cell 2016
161
15

Rad51-mediated double-strand break repair and mismatch correction of divergent substrates.
Ranjith Anand, Annette Beach, Kevin Li, James Haber. Nature 2017
66
15

Break-induced replication repair of damaged forks induces genomic duplications in human cells.
Lorenzo Costantino, Sotirios K Sotiriou, Juha K Rantala, Simon Magin, Emil Mladenov, Thomas Helleday, James E Haber, George Iliakis, Olli P Kallioniemi, Thanos D Halazonetis. Science 2014
284
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.