A citation-based method for searching scientific literature

Graham S Erwin, Matthew P Grieshop, Asfa Ali, Jun Qi, Matthew Lawlor, Deepak Kumar, Istaq Ahmad, Anna McNally, Natalia Teider, Katie Worringer, Rajeev Sivasankaran, Deeba N Syed, Asuka Eguchi, Md Ashraf, Justin Jeffery, Mousheng Xu, Paul M C Park, Hasan Mukhtar, Achal K Srivastava, Mohammed Faruq, James E Bradner, Aseem Z Ansari. Science 2017
Times Cited: 49







List of co-cited articles
582 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Friedreich's ataxia: autosomal recessive disease caused by an intronic GAA triplet repeat expansion.
V Campuzano, L Montermini, M D Moltò, L Pianese, M Cossée, F Cavalcanti, E Monros, F Rodius, F Duclos, A Monticelli,[...]. Science 1996
34

Prevention and reversal of severe mitochondrial cardiomyopathy by gene therapy in a mouse model of Friedreich's ataxia.
Morgane Perdomini, Brahim Belbellaa, Laurent Monassier, Laurence Reutenauer, Nadia Messaddeq, Nathalie Cartier, Ronald G Crystal, Patrick Aubourg, Hélène Puccio. Nat Med 2014
123
32

Activating frataxin expression by repeat-targeted nucleic acids.
Liande Li, Masayuki Matsui, David R Corey. Nat Commun 2016
48
29

Histone deacetylase inhibitors reverse gene silencing in Friedreich's ataxia.
David Herman, Kai Jenssen, Ryan Burnett, Elisabetta Soragni, Susan L Perlman, Joel M Gottesfeld. Nat Chem Biol 2006
304
28

R-loops associated with triplet repeat expansions promote gene silencing in Friedreich ataxia and fragile X syndrome.
Matthias Groh, Michele M P Lufino, Richard Wade-Martins, Natalia Gromak. PLoS Genet 2014
195
26

Epigenetic therapy for Friedreich ataxia.
Elisabetta Soragni, Wenyan Miao, Marco Iudicello, David Jacoby, Stefania De Mercanti, Marinella Clerico, Filomena Longo, Antonio Piga, Sherman Ku, Erica Campau,[...]. Ann Neurol 2014
85
24

Excision of Expanded GAA Repeats Alleviates the Molecular Phenotype of Friedreich's Ataxia.
Yanjie Li, Urszula Polak, Angela D Bhalla, Natalia Rozwadowska, Jill Sergesketter Butler, David R Lynch, Sharon Y R Dent, Marek Napierala. Mol Ther 2015
51
22

Rapid and Complete Reversal of Sensory Ataxia by Gene Therapy in a Novel Model of Friedreich Ataxia.
Françoise Piguet, Charline de Montigny, Nadège Vaucamps, Laurence Reutenauer, Aurélie Eisenmann, Hélène Puccio. Mol Ther 2018
43
25

Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers.
Isaac B Hilton, Anthony M D'Ippolito, Christopher M Vockley, Pratiksha I Thakore, Gregory E Crawford, Timothy E Reddy, Charles A Gersbach. Nat Biotechnol 2015
901
20

Friedreich ataxia: the clinical picture.
Massimo Pandolfo. J Neurol 2009
242
20

Recognition of the DNA minor groove by pyrrole-imidazole polyamides.
Peter B Dervan, Benjamin S Edelson. Curr Opin Struct Biol 2003
477
18

Identification of a small molecule that turns ON the pluripotency gene circuitry in human fibroblasts.
Ganesh N Pandian, Shinsuke Sato, Chandran Anandhakumar, Junichi Taniguchi, Kazuhiro Takashima, Junetha Syed, Le Han, Abhijit Saha, Toshikazu Bando, Hiroki Nagase,[...]. ACS Chem Biol 2014
31
25

Activation of Frataxin Protein Expression by Antisense Oligonucleotides Targeting the Mutant Expanded Repeat.
Liande Li, Xiulong Shen, Zhongtian Liu, Michaela Norrbom, Thazha P Prakash, Daniel O'Reilly, Vivek K Sharma, Masad J Damha, Jonathan K Watts, Frank Rigo,[...]. Nucleic Acid Ther 2018
18
44

A TAT-frataxin fusion protein increases lifespan and cardiac function in a conditional Friedreich's ataxia mouse model.
Piyush M Vyas, Wendy J Tomamichel, P Melanie Pride, Clifford M Babbey, Qiujuan Wang, Jennifer Mercier, Elizabeth M Martin, R Mark Payne. Hum Mol Genet 2012
56
16

Frataxin is reduced in Friedreich ataxia patients and is associated with mitochondrial membranes.
V Campuzano, L Montermini, Y Lutz, L Cova, C Hindelang, S Jiralerspong, Y Trottier, S J Kish, B Faucheux, P Trouillas,[...]. Hum Mol Genet 1997
545
16


Antitumor activity of a pyrrole-imidazole polyamide.
Fei Yang, Nicholas G Nickols, Benjamin C Li, Georgi K Marinov, Jonathan W Said, Peter B Dervan. Proc Natl Acad Sci U S A 2013
81
14

Epigenetic and neurological effects and safety of high-dose nicotinamide in patients with Friedreich's ataxia: an exploratory, open-label, dose-escalation study.
Vincenzo Libri, Cihangir Yandim, Stavros Athanasopoulos, Naomi Loyse, Theona Natisvili, Pui Pik Law, Ping Kei Chan, Tariq Mohammad, Marta Mauri, Kin Tung Tam,[...]. Lancet 2014
74
14

Mammalian frataxin controls sulfur production and iron entry during de novo Fe4S4 cluster assembly.
Florent Colin, Alain Martelli, Martin Clémancey, Jean-Marc Latour, Serge Gambarelli, Laura Zeppieri, Catherine Birck, Adeline Page, Hélène Puccio, Sandrine Ollagnier de Choudens. J Am Chem Soc 2013
103
14


A synthetic small molecule for rapid induction of multiple pluripotency genes in mouse embryonic fibroblasts.
Ganesh N Pandian, Yusuke Nakano, Shinsuke Sato, Hironobu Morinaga, Toshikazu Bando, Hiroki Nagase, Hiroshi Sugiyama. Sci Rep 2012
49
12

Role of mismatch repair enzymes in GAA·TTC triplet-repeat expansion in Friedreich ataxia induced pluripotent stem cells.
Jintang Du, Erica Campau, Elisabetta Soragni, Sherman Ku, James W Puckett, Peter B Dervan, Joel M Gottesfeld. J Biol Chem 2012
76
12

Distinct DNA-based epigenetic switches trigger transcriptional activation of silent genes in human dermal fibroblasts.
Ganesh N Pandian, Junichi Taniguchi, Syed Junetha, Shinsuke Sato, Le Han, Abhijit Saha, Chandran AnandhaKumar, Toshikazu Bando, Hiroki Nagase, Thangavel Vaijayanthi,[...]. Sci Rep 2014
40
15

DNA sequence-specific polyamides alleviate transcription inhibition associated with long GAA.TTC repeats in Friedreich's ataxia.
Ryan Burnett, Christian Melander, James W Puckett, Leslie S Son, Robert D Wells, Peter B Dervan, Joel M Gottesfeld. Proc Natl Acad Sci U S A 2006
96
12

Activation of gene expression by small molecule transcription factors.
A K Mapp, A Z Ansari, M Ptashne, P B Dervan. Proc Natl Acad Sci U S A 2000
150
12

Targeting 24 bp within Telomere Repeat Sequences with Tandem Tetramer Pyrrole-Imidazole Polyamide Probes.
Yusuke Kawamoto, Asuka Sasaki, Anandhakumar Chandran, Kaori Hashiya, Satoru Ide, Toshikazu Bando, Kazuhiro Maeshima, Hiroshi Sugiyama. J Am Chem Soc 2016
24
25

Sticky DNA: self-association properties of long GAA.TTC repeats in R.R.Y triplex structures from Friedreich's ataxia.
N Sakamoto, P D Chastain, P Parniewski, K Ohshima, M Pandolfo, J D Griffith, R D Wells. Mol Cell 1999
234
12

Sequence-specific DNA binding Pyrrole-imidazole polyamides and their applications.
Yusuke Kawamoto, Toshikazu Bando, Hiroshi Sugiyama. Bioorg Med Chem 2018
27
22

The Friedreich ataxia GAA repeat expansion mutation induces comparable epigenetic changes in human and transgenic mouse brain and heart tissues.
Sahar Al-Mahdawi, Ricardo Mouro Pinto, Ozama Ismail, Dhaval Varshney, Stefania Lymperi, Chiranjeevi Sandi, Daniah Trabzuni, Mark Pook. Hum Mol Genet 2008
173
12

DNA triplet repeats mediate heterochromatin-protein-1-sensitive variegated gene silencing.
Alexander Saveliev, Christopher Everett, Tammy Sharpe, Zoë Webster, Richard Festenstein. Nature 2003
189
12

Mortality in Friedreich ataxia.
Amy Y Tsou, Erin K Paulsen, Sarah J Lagedrost, Susan L Perlman, Katherine D Mathews, George R Wilmot, Bernard Ravina, Arnulf H Koeppen, David R Lynch. J Neurol Sci 2011
146
12

Clinical and genetic abnormalities in patients with Friedreich's ataxia.
A Dürr, M Cossee, Y Agid, V Campuzano, C Mignard, C Penet, J L Mandel, A Brice, M Koenig. N Engl J Med 1996
706
12

Editing DNA Methylation in the Mammalian Genome.
X Shawn Liu, Hao Wu, Xiong Ji, Yonatan Stelzer, Xuebing Wu, Szymon Czauderna, Jian Shu, Daniel Dadon, Richard A Young, Rudolf Jaenisch. Cell 2016
557
10

Improved nuclear localization of DNA-binding polyamides.
Nicholas G Nickols, Claire S Jacobs, Michelle E Farkas, Peter B Dervan. Nucleic Acids Res 2007
77
10

Highly efficient Cas9-mediated transcriptional programming.
Alejandro Chavez, Jonathan Scheiman, Suhani Vora, Benjamin W Pruitt, Marcelle Tuttle, Eswar P R Iyer, Shuailiang Lin, Samira Kiani, Christopher D Guzman, Daniel J Wiegand,[...]. Nat Methods 2015
672
10

Small molecule transcription factor mimic.
Youngjoo Kwon, Hans-Dieter Arndt, Qian Mao, Yongmun Choi, Yoshinori Kawazoe, Peter B Dervan, Motonari Uesugi. J Am Chem Soc 2004
65
10


Allosteric modulation of DNA by small molecules.
David M Chenoweth, Peter B Dervan. Proc Natl Acad Sci U S A 2009
110
10

Inhibition of KRAS codon 12 mutants using a novel DNA-alkylating pyrrole-imidazole polyamide conjugate.
Kiriko Hiraoka, Takahiro Inoue, Rhys Dylan Taylor, Takayoshi Watanabe, Nobuko Koshikawa, Hiroyuki Yoda, Ken-ichi Shinohara, Atsushi Takatori, Hirokazu Sugimoto, Yoshiaki Maru,[...]. Nat Commun 2015
58
10

Antiproliferative and apoptotic activities of sequence-specific histone acetyltransferase inhibitors.
Zutao Yu, Junichi Taniguchi, Yulei Wei, Ganesh N Pandian, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama. Eur J Med Chem 2017
10
50

Recognition of DNA by designed ligands at subnanomolar concentrations.
J W Trauger, E E Baird, P B Dervan. Nature 1996
297
10


A Synthetic DNA-Binding Domain Guides Distinct Chromatin-Modifying Small Molecules to Activate an Identical Gene Network.
Le Han, Ganesh N Pandian, Anandhakumar Chandran, Shinsuke Sato, Junichi Taniguchi, Gengo Kashiwazaki, Yoshito Sawatani, Kaori Hashiya, Toshikazu Bando, Yufang Xu,[...]. Angew Chem Int Ed Engl 2015
20
25

A synthetic small molecule for targeted transcriptional activation of germ cell genes in a human somatic cell.
Le Han, Ganesh N Pandian, Syed Junetha, Shinsuke Sato, Chandran Anandhakumar, Junichi Taniguchi, Abhijit Saha, Toshikazu Bando, Hiroki Nagase, Hiroshi Sugiyama. Angew Chem Int Ed Engl 2013
22
22

Epigenetic promoter silencing in Friedreich ataxia is dependent on repeat length.
Yogesh K Chutake, Christina Lam, Whitney N Costello, Michael Anderson, Sanjay I Bidichandani. Ann Neurol 2014
23
21



Biomimetic Artificial Epigenetic Code for Targeted Acetylation of Histones.
Junichi Taniguchi, Yihong Feng, Ganesh N Pandian, Fumitaka Hashiya, Takuya Hidaka, Kaori Hashiya, Soyoung Park, Toshikazu Bando, Shinji Ito, Hiroshi Sugiyama. J Am Chem Soc 2018
13
38

Inducible and reversible phenotypes in a novel mouse model of Friedreich's Ataxia.
Vijayendran Chandran, Kun Gao, Vivek Swarup, Revital Versano, Hongmei Dong, Maria C Jordan, Daniel H Geschwind. Elife 2017
28
17

Loss of Frataxin activates the iron/sphingolipid/PDK1/Mef2 pathway in mammals.
Kuchuan Chen, Tammy Szu-Yu Ho, Guang Lin, Kai Li Tan, Matthew N Rasband, Hugo J Bellen. Elife 2016
36
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.