A citation-based method for searching scientific literature

Frederick M Tomlin, Ulla I M Gerling-Driessen, Yi-Chang Liu, Ryan A Flynn, Janakiram R Vangala, Christian S Lentz, Sandra Clauder-Muenster, Petra Jakob, William F Mueller, Diana Ordoñez-Rueda, Malte Paulsen, Naoko Matsui, Deirdre Foley, Agnes Rafalko, Tadashi Suzuki, Matthew Bogyo, Lars M Steinmetz, Senthil K Radhakrishnan, Carolyn R Bertozzi. ACS Cent Sci 2017
Times Cited: 67







List of co-cited articles
511 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcription factor Nrf1 mediates the proteasome recovery pathway after proteasome inhibition in mammalian cells.
Senthil K Radhakrishnan, Candy S Lee, Patrick Young, Anne Beskow, Jefferson Y Chan, Raymond J Deshaies. Mol Cell 2010
308
49


Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum-associated degradation pathway.
Gregory M Enns, Vandana Shashi, Matthew Bainbridge, Michael J Gambello, Farah R Zahir, Thomas Bast, Rebecca Crimian, Kelly Schoch, Julia Platt, Rachel Cox,[...]. Genet Med 2014
114
41

The aspartyl protease DDI2 activates Nrf1 to compensate for proteasome dysfunction.
Shun Koizumi, Taro Irie, Shoshiro Hirayama, Yasuyuki Sakurai, Hideki Yashiroda, Isao Naguro, Hidenori Ichijo, Jun Hamazaki, Shigeo Murata. Elife 2016
84
40

Proteasomal degradation is transcriptionally controlled by TCF11 via an ERAD-dependent feedback loop.
Janos Steffen, Michael Seeger, Annett Koch, Elke Krüger. Mol Cell 2010
227
38

Prospective phenotyping of NGLY1-CDDG, the first congenital disorder of deglycosylation.
Christina Lam, Carlos Ferreira, Donna Krasnewich, Camilo Toro, Lea Latham, Wadih M Zein, Tanya Lehky, Carmen Brewer, Eva H Baker, Audrey Thurm,[...]. Genet Med 2017
63
38



N-glycanase NGLY1 regulates mitochondrial homeostasis and inflammation through NRF1.
Kun Yang, Ryan Huang, Haruhiko Fujihira, Tadashi Suzuki, Nan Yan. J Exp Med 2018
44
52

Endo-β-N-acetylglucosaminidase forms N-GlcNAc protein aggregates during ER-associated degradation in Ngly1-defective cells.
Chengcheng Huang, Yoichiro Harada, Akira Hosomi, Yuki Masahara-Negishi, Junichi Seino, Haruhiko Fujihira, Yoko Funakoshi, Takehiro Suzuki, Naoshi Dohmae, Tadashi Suzuki. Proc Natl Acad Sci U S A 2015
56
37

Transcriptome and functional analysis in a Drosophila model of NGLY1 deficiency provides insight into therapeutic approaches.
Katie G Owings, Joshua B Lowry, Yiling Bi, Matthew Might, Clement Y Chow. Hum Mol Genet 2018
27
77

The cytoplasmic peptide:N-glycanase (NGLY1) - Structure, expression and cellular functions.
Tadashi Suzuki, Chengcheng Huang, Haruhiko Fujihira. Gene 2016
52
36

Clinical application of exome sequencing in undiagnosed genetic conditions.
Anna C Need, Vandana Shashi, Yuki Hitomi, Kelly Schoch, Kevin V Shianna, Marie T McDonald, Miriam H Meisler, David B Goldstein. J Med Genet 2012
280
26

Lethality of mice bearing a knockout of the Ngly1-gene is partially rescued by the additional deletion of the Engase gene.
Haruhiko Fujihira, Yuki Masahara-Negishi, Masaru Tamura, Chengcheng Huang, Yoichiro Harada, Shigeharu Wakana, Daisuke Takakura, Nana Kawasaki, Naoyuki Taniguchi, Gen Kondoh,[...]. PLoS Genet 2017
33
51


NGLY1 mutation causes neuromotor impairment, intellectual disability, and neuropathy.
Ahmet Okay Caglayan, Sinan Comu, Jacob F Baranoski, Yesim Parman, Hande Kaymakçalan, Gozde Tugce Akgumus, Caner Caglar, Duygu Dolen, Emine Zeynep Erson-Omay, Akdes Serin Harmanci,[...]. Eur J Med Genet 2015
48
29

Loss of nuclear factor E2-related factor 1 in the brain leads to dysregulation of proteasome gene expression and neurodegeneration.
Candy S Lee, Chiashan Lee, Terry Hu, Janice M Nguyen, Jiasheng Zhang, Maureen V Martin, Marquis P Vawter, Eric J Huang, Jefferson Y Chan. Proc Natl Acad Sci U S A 2011
95
20

Mitochondrial function requires NGLY1.
Jianping Kong, Min Peng, Julian Ostrovsky, Young Joon Kwon, Olga Oretsky, Elizabeth M McCormick, Miao He, Yair Argon, Marni J Falk. Mitochondrion 2018
22
63

Nuclear Factor Erythroid-2 Like 1 (NFE2L1): Structure, function and regulation.
Hyun Min Kim, Jeong Woo Han, Jefferson Y Chan. Gene 2016
54
24

NRF1 Is an ER Membrane Sensor that Is Central to Cholesterol Homeostasis.
Scott B Widenmaier, Nicole A Snyder, Truc B Nguyen, Alessandro Arduini, Grace Y Lee, Ana Paula Arruda, Jani Saksi, Alexander Bartelt, Gökhan S Hotamisligil. Cell 2017
83
17


Regulation of proteasome assembly and activity in health and disease.
Adrien Rousseau, Anne Bertolotti. Nat Rev Mol Cell Biol 2018
131
16



Tissue-specific regulation of BMP signaling by Drosophila N-glycanase 1.
Antonio Galeone, Seung Yeop Han, Chengcheng Huang, Akira Hosomi, Tadashi Suzuki, Hamed Jafar-Nejad. Elife 2017
16
62


Antioxidants enhance mammalian proteasome expression through the Keap1-Nrf2 signaling pathway.
Mi-Kyoung Kwak, Nobunao Wakabayashi, Jennifer L Greenlaw, Masayuki Yamamoto, Thomas W Kensler. Mol Cell Biol 2003
345
14



Liver-specific inactivation of the Nrf1 gene in adult mouse leads to nonalcoholic steatohepatitis and hepatic neoplasia.
Zhenrong Xu, Linyun Chen, Laura Leung, T S Benedict Yen, Candy Lee, Jefferson Y Chan. Proc Natl Acad Sci U S A 2005
194
14

Basic leucine zipper protein Cnc-C is a substrate and transcriptional regulator of the Drosophila 26S proteasome.
Kristian Björk Grimberg, Anne Beskow, Daniel Lundin, Monica M Davis, Patrick Young. Mol Cell Biol 2011
46
19

Dual regulation of the transcriptional activity of Nrf1 by β-TrCP- and Hrd1-dependent degradation mechanisms.
Yoshiki Tsuchiya, Tomoko Morita, Mehee Kim, Shun-ichiro Iemura, Tohru Natsume, Masayuki Yamamoto, Akira Kobayashi. Mol Cell Biol 2011
65
13


Central nervous system-specific deletion of transcription factor Nrf1 causes progressive motor neuronal dysfunction.
Akira Kobayashi, Takako Tsukide, Tomohiro Miyasaka, Tomoko Morita, Tatsuya Mizoroki, Yoshiro Saito, Yasuo Ihara, Akihiko Takashima, Noriko Noguchi, Akiyoshi Fukamizu,[...]. Genes Cells 2011
59
15

O-GlcNAcylation Signal Mediates Proteasome Inhibitor Resistance in Cancer Cells by Stabilizing NRF1.
Hiroki Sekine, Keito Okazaki, Koichiro Kato, M Morshedul Alam, Hiroki Shima, Fumiki Katsuoka, Tadayuki Tsujita, Norio Suzuki, Akira Kobayashi, Kazuhiko Igarashi,[...]. Mol Cell Biol 2018
25
36

Nuclear factor-erythroid-2 related transcription factor-1 (Nrf1) is regulated by O-GlcNAc transferase.
Jeong Woo Han, Joshua L Valdez, Daniel V Ho, Candy S Lee, Hyun Min Kim, Xiaorong Wang, Lan Huang, Jefferson Y Chan. Free Radic Biol Med 2017
13
61

The casein kinase 2-nrf1 axis controls the clearance of ubiquitinated proteins by regulating proteasome gene expression.
Yoshiki Tsuchiya, Hiroaki Taniguchi, Yoshiyuki Ito, Tomoko Morita, M Rezaul Karim, Norihito Ohtake, Kousuke Fukagai, Takao Ito, Shota Okamuro, Shun-Ichiro Iemura,[...]. Mol Cell Biol 2013
37
21

A Homeostatic Shift Facilitates Endoplasmic Reticulum Proteostasis through Transcriptional Integration of Proteostatic Stress Response Pathways.
Liam Baird, Tadayuki Tsujita, Eri H Kobayashi, Ryo Funayama, Takeshi Nagashima, Keiko Nakayama, Masayuki Yamamoto. Mol Cell Biol 2017
28
28

A role for N-glycanase in the cytosolic turnover of glycoproteins.
Christian Hirsch, Daniël Blom, Hidde L Ploegh. EMBO J 2003
159
11

Deficiency of the Nrf1 and Nrf2 transcription factors results in early embryonic lethality and severe oxidative stress.
Laura Leung, Mandy Kwong, Stephen Hou, Candy Lee, Jefferson Y Chan. J Biol Chem 2003
214
11

Nrf1 and Nrf2 play distinct roles in activation of antioxidant response element-dependent genes.
Makiko Ohtsuji, Fumiki Katsuoka, Akira Kobayashi, Hiroyuki Aburatani, John D Hayes, Masayuki Yamamoto. J Biol Chem 2008
231
11

Proteasome inhibitors induce a terminal unfolded protein response in multiple myeloma cells.
Esther A Obeng, Louise M Carlson, Delia M Gutman, William J Harrington, Kelvin P Lee, Lawrence H Boise. Blood 2006
747
11

Unexplained death in patients with NGLY1 mutations may be explained by adrenal insufficiency.
Britt J van Keulen, Joost Rotteveel, Martijn J J Finken. Physiol Rep 2019
11
72


Evidence for an essential deglycosylation-independent activity of PNGase in Drosophila melanogaster.
Yoko Funakoshi, Yuki Negishi, J Peter Gergen, Junichi Seino, Kumiko Ishii, William J Lennarz, Ichiro Matsuo, Yukishige Ito, Naoyuki Taniguchi, Tadashi Suzuki. PLoS One 2010
28
25







Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.