A citation-based method for searching scientific literature

Julie Soutourina. Nat Rev Mol Cell Biol 2018
Times Cited: 227







List of co-cited articles
1246 articles co-cited >1



Times Cited
  Times     Co-cited
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Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.
Ann Boija, Isaac A Klein, Benjamin R Sabari, Alessandra Dall'Agnese, Eliot L Coffey, Alicia V Zamudio, Charles H Li, Krishna Shrinivas, John C Manteiga, Nancy M Hannett,[...]. Cell 2018
609
20

Mediator and RNA polymerase II clusters associate in transcription-dependent condensates.
Won-Ki Cho, Jan-Hendrik Spille, Micca Hecht, Choongman Lee, Charles Li, Valentin Grube, Ibrahim I Cisse. Science 2018
545
19

Coactivator condensation at super-enhancers links phase separation and gene control.
Benjamin R Sabari, Alessandra Dall'Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, Brian J Abraham, Nancy M Hannett, Alicia V Zamudio, John C Manteiga,[...]. Science 2018
911
19

Master transcription factors and mediator establish super-enhancers at key cell identity genes.
Warren A Whyte, David A Orlando, Denes Hnisz, Brian J Abraham, Charles Y Lin, Michael H Kagey, Peter B Rahl, Tong Ihn Lee, Richard A Young. Cell 2013
19

The Mediator Complex: At the Nexus of RNA Polymerase II Transcription.
Célia Jeronimo, François Robert. Trends Cell Biol 2017
109
16

The Mediator complex: a central integrator of transcription.
Benjamin L Allen, Dylan J Taatjes. Nat Rev Mol Cell Biol 2015
483
15

Mediator and cohesin connect gene expression and chromatin architecture.
Michael H Kagey, Jamie J Newman, Steve Bilodeau, Ye Zhan, David A Orlando, Nynke L van Berkum, Christopher C Ebmeier, Jesse Goossens, Peter B Rahl, Stuart S Levine,[...]. Nature 2010
14

A Phase Separation Model for Transcriptional Control.
Denes Hnisz, Krishna Shrinivas, Richard A Young, Arup K Chakraborty, Phillip A Sharp. Cell 2017
786
14

A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers.
Laila El Khattabi, Haiyan Zhao, Jens Kalchschmidt, Natalie Young, Seolkyoung Jung, Peter Van Blerkom, Philippe Kieffer-Kwon, Kyong-Rim Kieffer-Kwon, Solji Park, Xiang Wang,[...]. Cell 2019
83
16

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
13

The Mediator complex and transcription regulation.
Zachary C Poss, Christopher C Ebmeier, Dylan J Taatjes. Crit Rev Biochem Mol Biol 2013
234
12

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
12

Imaging dynamic and selective low-complexity domain interactions that control gene transcription.
Shasha Chong, Claire Dugast-Darzacq, Zhe Liu, Peng Dong, Gina M Dailey, Claudia Cattoglio, Alec Heckert, Sambashiva Banala, Luke Lavis, Xavier Darzacq,[...]. Science 2018
419
12

Selective inhibition of tumor oncogenes by disruption of super-enhancers.
Jakob Lovén, Heather A Hoke, Charles Y Lin, Ashley Lau, David A Orlando, Christopher R Vakoc, James E Bradner, Tong Ihn Lee, Richard A Young. Cell 2013
11

Developmental enhancers and chromosome topology.
Eileen E M Furlong, Michael Levine. Science 2018
210
11

Architecture of the RNA polymerase II-Mediator core initiation complex.
C Plaschka, L Larivière, L Wenzeck, M Seizl, M Hemann, D Tegunov, E V Petrotchenko, C H Borchers, W Baumeister, F Herzog,[...]. Nature 2015
205
11

Tail and Kinase Modules Differently Regulate Core Mediator Recruitment and Function In Vivo.
Célia Jeronimo, Marie-France Langelier, Alain R Bataille, John M Pascal, B Franklin Pugh, François Robert. Mol Cell 2016
78
12

Pol II phosphorylation regulates a switch between transcriptional and splicing condensates.
Yang Eric Guo, John C Manteiga, Jonathan E Henninger, Benjamin R Sabari, Alessandra Dall'Agnese, Nancy M Hannett, Jan-Hendrik Spille, Lena K Afeyan, Alicia V Zamudio, Krishna Shrinivas,[...]. Nature 2019
247
10

Long-range enhancer-promoter contacts in gene expression control.
Stefan Schoenfelder, Peter Fraser. Nat Rev Genet 2019
341
10

Mediator structure and rearrangements required for holoenzyme formation.
Kuang-Lei Tsai, Xiaodi Yu, Sneha Gopalan, Ti-Chun Chao, Ying Zhang, Laurence Florens, Michael P Washburn, Kenji Murakami, Ronald C Conaway, Joan W Conaway,[...]. Nature 2017
92
10

An atlas of active enhancers across human cell types and tissues.
Robin Andersson, Claudia Gebhard, Irene Miguel-Escalada, Ilka Hoof, Jette Bornholdt, Mette Boyd, Yun Chen, Xiaobei Zhao, Christian Schmidl, Takahiro Suzuki,[...]. Nature 2014
9

Mediator Undergoes a Compositional Change during Transcriptional Activation.
Natalia Petrenko, Yi Jin, Koon Ho Wong, Kevin Struhl. Mol Cell 2016
72
12

Cohesin Loss Eliminates All Loop Domains.
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Kyong-Rim Kieffer-Kwon, Adrian L Sanborn, Sarah E Johnstone, Gavin D Bascom, Ivan D Bochkov,[...]. Cell 2017
780
9

Reconstitution of active human core Mediator complex reveals a critical role of the MED14 subunit.
Murat A Cevher, Yi Shi, Dan Li, Brian T Chait, Sohail Malik, Robert G Roeder. Nat Struct Mol Biol 2014
84
10

Super-enhancers in the control of cell identity and disease.
Denes Hnisz, Brian J Abraham, Tong Ihn Lee, Ashley Lau, Violaine Saint-André, Alla A Sigova, Heather A Hoke, Richard A Young. Cell 2013
9

Biomolecular condensates: organizers of cellular biochemistry.
Salman F Banani, Hyun O Lee, Anthony A Hyman, Michael K Rosen. Nat Rev Mol Cell Biol 2017
8


Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
827
8

Structural basis of transcription initiation by RNA polymerase II.
Sarah Sainsbury, Carrie Bernecky, Patrick Cramer. Nat Rev Mol Cell Biol 2015
212
8

Widespread transcriptional pausing and elongation control at enhancers.
Telmo Henriques, Benjamin S Scruggs, Michiko O Inouye, Ginger W Muse, Lucy H Williams, Adam B Burkholder, Christopher A Lavender, David C Fargo, Karen Adelman. Genes Dev 2018
165
8

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
8

Human mediator subunit MED26 functions as a docking site for transcription elongation factors.
Hidehisa Takahashi, Tari J Parmely, Shigeo Sato, Chieri Tomomori-Sato, Charles A S Banks, Stephanie E Kong, Henrietta Szutorisz, Selene K Swanson, Skylar Martin-Brown, Michael P Washburn,[...]. Cell 2011
240
8


Structure of paused transcription complex Pol II-DSIF-NELF.
Seychelle M Vos, Lucas Farnung, Henning Urlaub, Patrick Cramer. Nature 2018
141
8

Structure of the human Mediator-bound transcription preinitiation complex.
R Abdella, A Talyzina, S Chen, C J Inouye, R Tjian, Y He. Science 2021
38
21

Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
7


YY1 Is a Structural Regulator of Enhancer-Promoter Loops.
Abraham S Weintraub, Charles H Li, Alicia V Zamudio, Alla A Sigova, Nancy M Hannett, Daniel S Day, Brian J Abraham, Malkiel A Cohen, Behnam Nabet, Dennis L Buckley,[...]. Cell 2017
406
7


Selective Mediator dependence of cell-type-specifying transcription.
Martin G Jaeger, Björn Schwalb, Sebastian D Mackowiak, Taras Velychko, Alexander Hanzl, Hana Imrichova, Matthias Brand, Benedikt Agerer, Someth Chorn, Behnam Nabet,[...]. Nat Genet 2020
36
19

Enhancer Control of Transcriptional Bursting.
Takashi Fukaya, Bomyi Lim, Michael Levine. Cell 2016
335
7

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
7

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
7

Transcription factors: from enhancer binding to developmental control.
François Spitz, Eileen E M Furlong. Nat Rev Genet 2012
7

Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex.
Philip J Robinson, Michael J Trnka, David A Bushnell, Ralph E Davis, Pierre-Jean Mattei, Alma L Burlingame, Roger D Kornberg. Cell 2016
142
7


Mediator Condensates Localize Signaling Factors to Key Cell Identity Genes.
Alicia V Zamudio, Alessandra Dall'Agnese, Jonathan E Henninger, John C Manteiga, Lena K Afeyan, Nancy M Hannett, Eliot L Coffey, Charles H Li, Ozgur Oksuz, Benjamin R Sabari,[...]. Mol Cell 2019
88
6

A recurrent mutation in MED12 leading to R961W causes Opitz-Kaveggia syndrome.
Hiba Risheg, John M Graham, Robin D Clark, R Curtis Rogers, John M Opitz, John B Moeschler, Andreas P Peiffer, Melanie May, Sumy M Joseph, Julie R Jones,[...]. Nat Genet 2007
155
6

Mediator kinase inhibition further activates super-enhancer-associated genes in AML.
Henry E Pelish, Brian B Liau, Ioana I Nitulescu, Anupong Tangpeerachaikul, Zachary C Poss, Diogo H Da Silva, Brittany T Caruso, Alexander Arefolov, Olugbeminiyi Fadeyi, Amanda L Christie,[...]. Nature 2015
221
6

DNA loop extrusion by human cohesin.
Iain F Davidson, Benedikt Bauer, Daniela Goetz, Wen Tang, Gordana Wutz, Jan-Michael Peters. Science 2019
274
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.