A citation-based method for searching scientific literature

William Bialek. Rep Prog Phys 2018
Times Cited: 12







List of co-cited articles
18 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity





Theory, models and biology.
Wenying Shou, Carl T Bergstrom, Arup K Chakraborty, Frances K Skinner. Elife 2015
27
16


Muscle as a metamaterial operating near a critical point.
M Caruel, J-M Allain, L Truskinovsky. Phys Rev Lett 2013
17
16

Physics of muscle contraction.
M Caruel, L Truskinovsky. Rep Prog Phys 2018
11
18


Statistical mechanics of the Huxley-Simmons model.
M Caruel, L Truskinovsky. Phys Rev E 2016
8
25

Being critical of criticality in the brain.
John M Beggs, Nicholas Timme. Front Physiol 2012
165
16

Brain organization into resting state networks emerges at criticality on a model of the human connectome.
Ariel Haimovici, Enzo Tagliazucchi, Pablo Balenzuela, Dante R Chialvo. Phys Rev Lett 2013
187
16

Criticality in large-scale brain FMRI dynamics unveiled by a novel point process analysis.
Enzo Tagliazucchi, Pablo Balenzuela, Daniel Fraiman, Dante R Chialvo. Front Physiol 2012
287
16


Weak pairwise correlations imply strongly correlated network states in a neural population.
Elad Schneidman, Michael J Berry, Ronen Segev, William Bialek. Nature 2006
719
16

Age-related changes in the ease of dynamical transitions in human brain activity.
Takahiro Ezaki, Michiko Sakaki, Takamitsu Watanabe, Naoki Masuda. Hum Brain Mapp 2018
10
20

A pairwise maximum entropy model accurately describes resting-state human brain networks.
Takamitsu Watanabe, Satoshi Hirose, Hiroyuki Wada, Yoshio Imai, Toru Machida, Ichiro Shirouzu, Seiki Konishi, Yasushi Miyashita, Naoki Masuda. Nat Commun 2013
68
16

Energy landscape and dynamics of brain activity during human bistable perception.
Takamitsu Watanabe, Naoki Masuda, Fukuda Megumi, Ryota Kanai, Geraint Rees. Nat Commun 2014
43
16

Energy landscape analysis of neuroimaging data.
Takahiro Ezaki, Takamitsu Watanabe, Masayuki Ohzeki, Naoki Masuda. Philos Trans A Math Phys Eng Sci 2017
20
16

Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo.
Michael W Perry, Alistair N Boettiger, Michael Levine. Proc Natl Acad Sci U S A 2011
141
8

Precision of hunchback expression in the Drosophila embryo.
Michael W Perry, Jacques P Bothma, Ryan D Luu, Michael Levine. Curr Biol 2012
59
8


Chromatin regulation at the frontier of synthetic biology.
Albert J Keung, J Keith Joung, Ahmad S Khalil, James J Collins. Nat Rev Genet 2015
59
8


Theory in Biology: Figure 1 or Figure 7?
Rob Phillips. Trends Cell Biol 2015
17
8



A decade of transcription factor-mediated reprogramming to pluripotency.
Kazutoshi Takahashi, Shinya Yamanaka. Nat Rev Mol Cell Biol 2016
354
8




A framework for modelling gene regulation which accommodates non-equilibrium mechanisms.
Tobias Ahsendorf, Felix Wong, Roland Eils, Jeremy Gunawardena. BMC Biol 2014
24
8



Quantitative model for gene regulation by lambda phage repressor.
G K Ackers, A D Johnson, M A Shea. Proc Natl Acad Sci U S A 1982
388
8

Bicoid cooperative DNA binding is critical for embryonic patterning in Drosophila.
Danielle Lebrecht, Marisa Foehr, Eric Smith, Francisco J P Lopes, Carlos E Vanario-Alonso, John Reinitz, David S Burz, Steven D Hanes. Proc Natl Acad Sci U S A 2005
76
8

ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.
J MONOD, J WYMAN, J P CHANGEUX. J Mol Biol 1965
8

Eukaryotic transcriptional dynamics: from single molecules to cell populations.
Antoine Coulon, Carson C Chow, Robert H Singer, Daniel R Larson. Nat Rev Genet 2013
178
8

Biology is more theoretical than physics.
Jeremy Gunawardena. Mol Biol Cell 2013
11
9

Thermodynamic state ensemble models of cis-regulation.
Marc S Sherman, Barak A Cohen. PLoS Comput Biol 2012
46
8

Transcription factors: from enhancer binding to developmental control.
François Spitz, Eileen E M Furlong. Nat Rev Genet 2012
917
8

Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism.
Ty C Voss, R Louis Schiltz, Myong-Hee Sung, Paul M Yen, John A Stamatoyannopoulos, Simon C Biddie, Thomas A Johnson, Tina B Miranda, Sam John, Gordon L Hager. Cell 2011
215
8

Transcriptional regulation by the numbers: models.
Lacramioara Bintu, Nicolas E Buchler, Hernan G Garcia, Ulrich Gerland, Terence Hwa, Jané Kondev, Rob Phillips. Curr Opin Genet Dev 2005
431
8


The underappreciated role of allostery in the cellular network.
Ruth Nussinov, Chung-Jung Tsai, Buyong Ma. Annu Rev Biophys 2013
117
8

Nucleosome-mediated cooperativity between transcription factors.
Leonid A Mirny. Proc Natl Acad Sci U S A 2010
175
8

Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation.
Petter Hammar, Mats Walldén, David Fange, Fredrik Persson, Ozden Baltekin, Gustaf Ullman, Prune Leroy, Johan Elf. Nat Genet 2014
82
8


Probing the limits to positional information.
Thomas Gregor, David W Tank, Eric F Wieschaus, William Bialek. Cell 2007
417
8




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.