A citation-based method for searching scientific literature

Guillaume Latgé, Christophe Poulet, Vincent Bours, Claire Josse, Guy Jerusalem. Int J Mol Sci 2018
Times Cited: 32







List of co-cited articles
127 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The landscape of antisense gene expression in human cancers.
O Alejandro Balbin, Rohit Malik, Saravana M Dhanasekaran, John R Prensner, Xuhong Cao, Yi-Mi Wu, Dan Robinson, Rui Wang, Guoan Chen, David G Beer,[...]. Genome Res 2015
91
21

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
21

Antisense transcription in the mammalian transcriptome.
S Katayama, Y Tomaru, T Kasukawa, K Waki, M Nakanishi, M Nakamura, H Nishida, C C Yap, M Suzuki, J Kawai,[...]. Science 2005
15

Gene regulation by antisense transcription.
Vicent Pelechano, Lars M Steinmetz. Nat Rev Genet 2013
356
12


Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.
Mitchell Guttman, Ido Amit, Manuel Garber, Courtney French, Michael F Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W Carey, John P Cassady,[...]. Nature 2009
12

Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene.
Y Kotake, T Nakagawa, K Kitagawa, S Suzuki, N Liu, M Kitagawa, Y Xiong. Oncogene 2011
706
12

Evolution and functions of long noncoding RNAs.
Chris P Ponting, Peter L Oliver, Wolf Reik. Cell 2009
12

Biological functions of natural antisense transcripts.
Wojciech Rosikiewicz, Izabela Makałowska. Acta Biochim Pol 2016
38
12


Molecular mechanisms of long noncoding RNAs.
Kevin C Wang, Howard Y Chang. Mol Cell 2011
12

The transcriptional landscape of the mammalian genome.
P Carninci, T Kasukawa, S Katayama, J Gough, M C Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells,[...]. Science 2005
9

Transcriptome-wide analysis of natural antisense transcripts shows their potential role in breast cancer.
Stephane Wenric, Sonia ElGuendi, Jean-Hubert Caberg, Warda Bezzaou, Corinne Fasquelle, Benoit Charloteaux, Latifa Karim, Benoit Hennuy, Pierre Frères, Joëlle Collignon,[...]. Sci Rep 2017
23
13

Head-to-head antisense transcription and R-loop formation promotes transcriptional activation.
Raquel Boque-Sastre, Marta Soler, Cristina Oliveira-Mateos, Anna Portela, Catia Moutinho, Sergi Sayols, Alberto Villanueva, Manel Esteller, Sonia Guil. Proc Natl Acad Sci U S A 2015
107
9

Regulatory roles of natural antisense transcripts.
Mohammad Ali Faghihi, Claes Wahlestedt. Nat Rev Mol Cell Biol 2009
477
9

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.
Rajnish A Gupta, Nilay Shah, Kevin C Wang, Jeewon Kim, Hugo M Horlings, David J Wong, Miao-Chih Tsai, Tiffany Hung, Pedram Argani, John L Rinn,[...]. Nature 2010
9


Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
9

CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features.
Yu-Jian Kang, De-Chang Yang, Lei Kong, Mei Hou, Yu-Qi Meng, Liping Wei, Ge Gao. Nucleic Acids Res 2017
253
9

Nuclear Long Noncoding RNAs: Key Regulators of Gene Expression.
Qinyu Sun, Qinyu Hao, Kannanganattu V Prasanth. Trends Genet 2018
212
9

An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.
Christine M Clemson, John N Hutchinson, Sergio A Sara, Alexander W Ensminger, Archa H Fox, Andrew Chess, Jeanne B Lawrence. Mol Cell 2009
858
9

The Landscape of long noncoding RNA classification.
Georges St Laurent, Claes Wahlestedt, Philipp Kapranov. Trends Genet 2015
522
9

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
9

The multidimensional mechanisms of long noncoding RNA function.
Francesco P Marchese, Ivan Raimondi, Maite Huarte. Genome Biol 2017
426
9

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
9

NONCODEV5: a comprehensive annotation database for long non-coding RNAs.
ShuangSang Fang, LiLi Zhang, JinCheng Guo, YiWei Niu, Yang Wu, Hui Li, LianHe Zhao, XiYuan Li, XueYi Teng, XianHui Sun,[...]. Nucleic Acids Res 2018
207
9

LNCipedia 5: towards a reference set of human long non-coding RNAs.
Pieter-Jan Volders, Jasper Anckaert, Kenneth Verheggen, Justine Nuytens, Lennart Martens, Pieter Mestdagh, Jo Vandesompele. Nucleic Acids Res 2019
146
9

Long Non-Coding RNAs in the Regulation of Gene Expression: Physiology and Disease.
Juliane C R Fernandes, Stephanie M Acuña, Juliana I Aoki, Lucile M Floeter-Winter, Sandra M Muxel. Noncoding RNA 2019
203
9


starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.
Jun-Hao Li, Shun Liu, Hui Zhou, Liang-Hu Qu, Jian-Hua Yang. Nucleic Acids Res 2014
9

Post-transcriptional inducible gene regulation by natural antisense RNA.
Mikio Nishizawa, Yukinobu Ikeya, Tadayoshi Okumura, Tominori Kimura. Front Biosci (Landmark Ed) 2015
29
6



The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation.
Vidisha Tripathi, Jonathan D Ellis, Zhen Shen, David Y Song, Qun Pan, Andrew T Watt, Susan M Freier, C Frank Bennett, Alok Sharma, Paula A Bubulya,[...]. Mol Cell 2010
6

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Ewan Birney, John A Stamatoyannopoulos, Anindya Dutta, Roderic Guigó, Thomas R Gingeras, Elliott H Margulies, Zhiping Weng, Michael Snyder, Emmanouil T Dermitzakis, Robert E Thurman,[...]. Nature 2007
6

The regulatory roles of long non-coding RNAs in the development of chemoresistance in breast cancer.
Akshay Malhotra, Manju Jain, Hridayesh Prakash, Karen M Vasquez, Aklank Jain. Oncotarget 2017
41
6

lncRNAs in development and disease: from functions to mechanisms.
M Joaquina Delás, Gregory J Hannon. Open Biol 2017
82
6

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
6

Increasingly transformed MCF-10A cells have a progressively tumor-like phenotype in three-dimensional basement membrane culture.
Karen M Imbalzano, Iva Tatarkova, Anthony N Imbalzano, Jeffrey A Nickerson. Cancer Cell Int 2009
52
6

Natural antisense transcripts.
Olga Khorkova, Amanda J Myers, Jane Hsiao, Claes Wahlestedt. Hum Mol Genet 2014
80
6

Isolation and characterization of a spontaneously immortalized human breast epithelial cell line, MCF-10.
H D Soule, T M Maloney, S R Wolman, W D Peterson, R Brenz, C M McGrath, J Russo, R J Pauley, R F Jones, S C Brooks. Cancer Res 1990
6

Emerging functional and mechanistic paradigms of mammalian long non-coding RNAs.
Victoria A Moran, Ranjan J Perera, Ahmad M Khalil. Nucleic Acids Res 2012
427
6

Cancer Statistics, 2017.
Rebecca L Siegel, Kimberly D Miller, Ahmedin Jemal. CA Cancer J Clin 2017
6


H3K27me3 induces multidrug resistance in small cell lung cancer by affecting HOXA1 DNA methylation via regulation of the lncRNA HOTAIR.
Shun Fang, Yefeng Shen, Bin Chen, Yuanzhou Wu, Longfei Jia, Yaling Li, Yaru Zhu, Yusheng Yan, Man Li, Rui Chen,[...]. Ann Transl Med 2018
15
13

HOTAIR: An Oncogenic Long Non-Coding RNA in Human Cancer.
Qing Tang, Swei Sunny Hann. Cell Physiol Biochem 2018
112
6

Cis-acting noncoding RNAs: friends and foes.
Sònia Guil, Manel Esteller. Nat Struct Mol Biol 2012
235
6


Characteristics of Antisense Transcript Promoters and the Regulation of Their Activity.
Shudai Lin, Li Zhang, Wen Luo, Xiquan Zhang. Int J Mol Sci 2015
18
11

The long and the short of noncoding RNAs.
Christopher A Brosnan, Olivier Voinnet. Curr Opin Cell Biol 2009
234
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.