A citation-based method for searching scientific literature

Alicia J Angelbello, Jonathan L Chen, Jessica L Childs-Disney, Peiyuan Zhang, Zi-Fu Wang, Matthew D Disney. Chem Rev 2018
Times Cited: 39







List of co-cited articles
376 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Small Molecule Inhibition of microRNA-210 Reprograms an Oncogenic Hypoxic Circuit.
Matthew G Costales, Christopher L Haga, Sai Pradeep Velagapudi, Jessica L Childs-Disney, Donald G Phinney, Matthew D Disney. J Am Chem Soc 2017
87
38

Design of a small molecule against an oncogenic noncoding RNA.
Sai Pradeep Velagapudi, Michael D Cameron, Christopher L Haga, Laura H Rosenberg, Marie Lafitte, Derek R Duckett, Donald G Phinney, Matthew D Disney. Proc Natl Acad Sci U S A 2016
105
38

Sequence-based design of bioactive small molecules that target precursor microRNAs.
Sai Pradeep Velagapudi, Steven M Gallo, Matthew D Disney. Nat Chem Biol 2014
196
38

Precise small-molecule recognition of a toxic CUG RNA repeat expansion.
Suzanne G Rzuczek, Lesley A Colgan, Yoshio Nakai, Michael D Cameron, Denis Furling, Ryohei Yasuda, Matthew D Disney. Nat Chem Biol 2017
105
33

Small Molecule Targeted Recruitment of a Nuclease to RNA.
Matthew G Costales, Yasumasa Matsumoto, Sai Pradeep Velagapudi, Matthew D Disney. J Am Chem Soc 2018
56
33

The Emerging Role of RNA as a Therapeutic Target for Small Molecules.
Colleen M Connelly, Michelle H Moon, John S Schneekloth. Cell Chem Biol 2016
153
30

Inforna 2.0: A Platform for the Sequence-Based Design of Small Molecules Targeting Structured RNAs.
Matthew D Disney, Audrey M Winkelsas, Sai Pradeep Velagapudi, Mark Southern, Mohammad Fallahi, Jessica L Childs-Disney. ACS Chem Biol 2016
86
28

Defining RNA-Small Molecule Affinity Landscapes Enables Design of a Small Molecule Inhibitor of an Oncogenic Noncoding RNA.
Sai Pradeep Velagapudi, Yiling Luo, Tuan Tran, Hafeez S Haniff, Yoshio Nakai, Mohammad Fallahi, Gustavo J Martinez, Jessica L Childs-Disney, Matthew D Disney. ACS Cent Sci 2017
46
28

Approved Anti-cancer Drugs Target Oncogenic Non-coding RNAs.
Sai Pradeep Velagapudi, Matthew G Costales, Balayeshwanth R Vummidi, Yoshio Nakai, Alicia J Angelbello, Tuan Tran, Hafeez S Haniff, Yasumasa Matsumoto, Zi Fu Wang, Arnab K Chatterjee,[...]. Cell Chem Biol 2018
35
28

Precise small-molecule cleavage of an r(CUG) repeat expansion in a myotonic dystrophy mouse model.
Alicia J Angelbello, Suzanne G Rzuczek, Kendra K Mckee, Jonathan L Chen, Hailey Olafson, Michael D Cameron, Walter N Moss, Eric T Wang, Matthew D Disney. Proc Natl Acad Sci U S A 2019
45
25

Selective small-molecule inhibition of an RNA structural element.
John A Howe, Hao Wang, Thierry O Fischmann, Carl J Balibar, Li Xiao, Andrew M Galgoci, Juliana C Malinverni, Todd Mayhood, Artjohn Villafania, Ali Nahvi,[...]. Nature 2015
193
20

Small Molecule Inhibition of miR-544 Biogenesis Disrupts Adaptive Responses to Hypoxia by Modulating ATM-mTOR Signaling.
Christopher L Haga, Sai Pradeep Velagapudi, Jacqueline R Strivelli, Wang-Yong Yang, Matthew D Disney, Donald G Phinney. ACS Chem Biol 2015
36
22

Discovery of selective bioactive small molecules by targeting an RNA dynamic ensemble.
Andrew C Stelzer, Aaron T Frank, Jeremy D Kratz, Michael D Swanson, Marta J Gonzalez-Hernandez, Janghyun Lee, Ioan Andricioaei, David M Markovitz, Hashim M Al-Hashimi. Nat Chem Biol 2011
152
20

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure.
David H Mathews, Matthew D Disney, Jessica L Childs, Susan J Schroeder, Michael Zuker, Douglas H Turner. Proc Natl Acad Sci U S A 2004
903
20


Targeting RNA in mammalian systems with small molecules.
Anita Donlic, Amanda E Hargrove. Wiley Interdiscip Rev RNA 2018
65
20

Features of modularly assembled compounds that impart bioactivity against an RNA target.
Suzanne G Rzuczek, Yu Gao, Zhen-Zhi Tang, Charles A Thornton, Thomas Kodadek, Matthew D Disney. ACS Chem Biol 2013
33
21

Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
17

Principles for targeting RNA with drug-like small molecules.
Katherine Deigan Warner, Christine E Hajdin, Kevin M Weeks. Nat Rev Drug Discov 2018
180
17

A Designed Small Molecule Inhibitor of a Non-Coding RNA Sensitizes HER2 Negative Cancers to Herceptin.
Matthew G Costales, Dominic G Hoch, Daniel Abegg, Jessica L Childs-Disney, Sai Pradeep Velagapudi, Alexander Adibekian, Matthew D Disney. J Am Chem Soc 2019
29
24


Analysis of secondary structural elements in human microRNA hairpin precursors.
Biao Liu, Jessica L Childs-Disney, Brent M Znosko, Dan Wang, Mohammad Fallahi, Steven M Gallo, Matthew D Disney. BMC Bioinformatics 2016
21
28

Small molecules targeting viral RNA.
Thomas Hermann. Wiley Interdiscip Rev RNA 2016
75
15

Discovery of Key Physicochemical, Structural, and Spatial Properties of RNA-Targeted Bioactive Ligands.
Brittany S Morgan, Jordan E Forte, Rebecca N Culver, Yuqi Zhang, Amanda E Hargrove. Angew Chem Int Ed Engl 2017
41
15


Amiloride as a new RNA-binding scaffold with activity against HIV-1 TAR.
Neeraj N Patwardhan, Laura R Ganser, Gary J Kapral, Christopher S Eubanks, Janghyun Lee, Bharathwaj Sathyamoorthy, Hashim M Al-Hashimi, Amanda E Hargrove. Medchemcomm 2017
42
15


Small-molecule targeted recruitment of a nuclease to cleave an oncogenic RNA in a mouse model of metastatic cancer.
Matthew G Costales, Haruo Aikawa, Yue Li, Jessica L Childs-Disney, Daniel Abegg, Dominic G Hoch, Sai Pradeep Velagapudi, Yoshio Nakai, Tanya Khan, Kye Won Wang,[...]. Proc Natl Acad Sci U S A 2020
53
15

Recent advances in developing small molecules targeting RNA.
Lirui Guan, Matthew D Disney. ACS Chem Biol 2012
186
12

Discovery of Inhibitors of MicroRNA-21 Processing Using Small Molecule Microarrays.
Colleen M Connelly, Robert E Boer, Michelle H Moon, Peter Gareiss, John S Schneekloth. ACS Chem Biol 2017
43
12

Design of a bioactive small molecule that targets the myotonic dystrophy type 1 RNA via an RNA motif-ligand database and chemical similarity searching.
Raman Parkesh, Jessica L Childs-Disney, Masayuki Nakamori, Amit Kumar, Eric Wang, Thomas Wang, Jason Hoskins, Tuan Tran, David Housman, Charles A Thornton,[...]. J Am Chem Soc 2012
99
12



Non-coding RNAs in human disease.
Manel Esteller. Nat Rev Genet 2011
12

Approaches to Validate and Manipulate RNA Targets with Small Molecules in Cells.
Jessica L Childs-Disney, Matthew D Disney. Annu Rev Pharmacol Toxicol 2016
40
12

Design of a bioactive small molecule that targets r(AUUCU) repeats in spinocerebellar ataxia 10.
Wang-Yong Yang, Rui Gao, Mark Southern, Partha S Sarkar, Matthew D Disney. Nat Commun 2016
31
16

Small molecule chemical probes of microRNA function.
Sai Pradeep Velagapudi, Balayeshwanth R Vummidi, Matthew D Disney. Curr Opin Chem Biol 2015
33
15

Regulating miRNA-21 Biogenesis By Bifunctional Small Molecules.
Hao Yan, Umesh Bhattarai, Zhi-Fo Guo, Fu-Sen Liang. J Am Chem Soc 2017
29
17

Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
12

Two-dimensional combinatorial screening identifies specific aminoglycoside-RNA internal loop partners.
Matthew D Disney, Lucas P Labuda, Dustin J Paul, Shane G Poplawski, Alexei Pushechnikov, Tuan Tran, Sai P Velagapudi, Meilan Wu, Jessica L Childs-Disney. J Am Chem Soc 2008
92
12

Insights into the development of chemical probes for RNA.
Brittany S Morgan, Jordan E Forte, Amanda E Hargrove. Nucleic Acids Res 2018
28
17

Targeted Degradation of a Hypoxia-Associated Non-coding RNA Enhances the Selectivity of a Small Molecule Interacting with RNA.
Matthew G Costales, Blessy Suresh, Kamalakannan Vishnu, Matthew D Disney. Cell Chem Biol 2019
32
15

Targeting RNA with small molecules.
Jason R Thomas, Paul J Hergenrother. Chem Rev 2008
419
10

RNA and disease.
Thomas A Cooper, Lili Wan, Gideon Dreyfuss. Cell 2009
780
10

A Macrocyclic Peptide Ligand Binds the Oncogenic MicroRNA-21 Precursor and Suppresses Dicer Processing.
Matthew D Shortridge, Matthew J Walker, Tom Pavelitz, Yu Chen, Wen Yang, Gabriele Varani. ACS Chem Biol 2017
36
11


Motor neuron disease. SMN2 splicing modifiers improve motor function and longevity in mice with spinal muscular atrophy.
Nikolai A Naryshkin, Marla Weetall, Amal Dakka, Jana Narasimhan, Xin Zhao, Zhihua Feng, Karen K Y Ling, Gary M Karp, Hongyan Qi, Matthew G Woll,[...]. Science 2014
284
10

The rise of regulatory RNA.
Kevin V Morris, John S Mattick. Nat Rev Genet 2014
754
10

RNA as a small molecule druggable target.
Noreen F Rizvi, Graham F Smith. Bioorg Med Chem Lett 2017
39
10

Binding to SMN2 pre-mRNA-protein complex elicits specificity for small molecule splicing modifiers.
Manaswini Sivaramakrishnan, Kathleen D McCarthy, Sébastien Campagne, Sylwia Huber, Sonja Meier, Angélique Augustin, Tobias Heckel, Hélène Meistermann, Melanie N Hug, Pascale Birrer,[...]. Nat Commun 2017
76
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.