A citation-based method for searching scientific literature

Silvija Bilokapic, Mike Strauss, Mario Halic. Nat Struct Mol Biol 2018
Times Cited: 76







List of co-cited articles
769 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
72


UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
32

Asymmetric unwrapping of nucleosomes under tension directed by DNA local flexibility.
Thuy T M Ngo, Qiucen Zhang, Ruobo Zhou, Jaya G Yodh, Taekjip Ha. Cell 2015
153
31

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
Curt A Davey, David F Sargent, Karolin Luger, Armin W Maeder, Timothy J Richmond. J Mol Biol 2002
964
31

Structural rearrangements of the histone octamer translocate DNA.
Silvija Bilokapic, Mike Strauss, Mario Halic. Nat Commun 2018
36
63

Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure.
Xiaoyu Liu, Meijing Li, Xian Xia, Xueming Li, Zhucheng Chen. Nature 2017
121
28


Nucleosome-Chd1 structure and implications for chromatin remodelling.
Lucas Farnung, Seychelle M Vos, Christoph Wigge, Patrick Cramer. Nature 2017
116
25


Rapid spontaneous accessibility of nucleosomal DNA.
Gu Li, Marcia Levitus, Carlos Bustamante, Jonathan Widom. Nat Struct Mol Biol 2005
443
23

Reconstitution of nucleosome core particles from recombinant histones and DNA.
Pamela N Dyer, Raji S Edayathumangalam, Cindy L White, Yunhe Bao, Srinivas Chakravarthy, Uma M Muthurajan, Karolin Luger. Methods Enzymol 2004
488
22

Structure of RCC1 chromatin factor bound to the nucleosome core particle.
Ravindra D Makde, Joseph R England, Hemant P Yennawar, Song Tan. Nature 2010
265
21

PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
21

High-resolution dynamic mapping of histone-DNA interactions in a nucleosome.
Michael A Hall, Alla Shundrovsky, Lu Bai, Robert M Fulbright, John T Lis, Michelle D Wang. Nat Struct Mol Biol 2009
253
21

Nucleosome structure and function.
Robert K McGinty, Song Tan. Chem Rev 2015
205
19

Structural basis for ATP-dependent chromatin remodelling by the INO80 complex.
Sebastian Eustermann, Kevin Schall, Dirk Kostrewa, Kristina Lakomek, Mike Strauss, Manuela Moldt, Karl-Peter Hopfner. Nature 2018
99
19


CTFFIND4: Fast and accurate defocus estimation from electron micrographs.
Alexis Rohou, Nikolaus Grigorieff. J Struct Biol 2015
18


Structure and regulation of the human INO80-nucleosome complex.
Rafael Ayala, Oliver Willhoft, Ricardo J Aramayo, Martin Wilkinson, Elizabeth A McCormack, Lorraine Ocloo, Dale B Wigley, Xiaodong Zhang. Nature 2018
88
18

Structure and dynamics of the yeast SWR1-nucleosome complex.
Oliver Willhoft, Mohamed Ghoneim, Chia-Liang Lin, Eugene Y D Chua, Martin Wilkinson, Yuriy Chaban, Rafael Ayala, Elizabeth A McCormack, Lorraine Ocloo, David S Rueda,[...]. Science 2018
75
18

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy.
Shawn Q Zheng, Eugene Palovcak, Jean-Paul Armache, Kliment A Verba, Yifan Cheng, David A Agard. Nat Methods 2017
18

Nucleosome structure and dynamics are coming of age.
Keda Zhou, Guillaume Gaullier, Karolin Luger. Nat Struct Mol Biol 2019
88
18

Nucleosomes facilitate their own invasion.
Gu Li, Jonathan Widom. Nat Struct Mol Biol 2004
256
17

Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
17

Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.
Cedric R Clapier, Janet Iwasa, Bradley R Cairns, Craig L Peterson. Nat Rev Mol Cell Biol 2017
351
17

Cryo-EM study of the chromatin fiber reveals a double helix twisted by tetranucleosomal units.
Feng Song, Ping Chen, Dapeng Sun, Mingzhu Wang, Liping Dong, Dan Liang, Rui-Ming Xu, Ping Zhu, Guohong Li. Science 2014
337
15

Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.
Jan Bednar, Isabel Garcia-Saez, Ramachandran Boopathi, Amber R Cutter, Gabor Papai, Anna Reymer, Sajad H Syed, Imtiaz Nisar Lone, Ognyan Tonchev, Corinne Crucifix,[...]. Mol Cell 2017
118
15

Asymmetric unwrapping of nucleosomal DNA propagates asymmetric opening and dissociation of the histone core.
Yujie Chen, Joshua M Tokuda, Traci Topping, Steve P Meisburger, Suzette A Pabit, Lisa M Gloss, Lois Pollack. Proc Natl Acad Sci U S A 2017
53
22

Structural basis of the nucleosome transition during RNA polymerase II passage.
Tomoya Kujirai, Haruhiko Ehara, Yuka Fujino, Mikako Shirouzu, Shun-Ichi Sekine, Hitoshi Kurumizaka. Science 2018
70
17

The structure of DNA in the nucleosome core.
Timothy J Richmond, Curt A Davey. Nature 2003
771
14

The mechanics behind DNA sequence-dependent properties of the nucleosome.
Eugene Y D Chua, Dileep Vasudevan, Gabriela E Davey, Bin Wu, Curt A Davey. Nucleic Acids Res 2012
104
14


Nucleosome accessibility governed by the dimer/tetramer interface.
Vera Böhm, Aaron R Hieb, Andrew J Andrews, Alexander Gansen, Andrea Rocker, Katalin Tóth, Karolin Luger, Jörg Langowski. Nucleic Acids Res 2011
135
13

3.9 Å structure of the nucleosome core particle determined by phase-plate cryo-EM.
Eugene Y D Chua, Vinod K Vogirala, Oviya Inian, Andrew S W Wong, Lars Nordenskiöld, Juergen M Plitzko, Radostin Danev, Sara Sandin. Nucleic Acids Res 2016
49
20

Chromatin fiber folding: requirement for the histone H4 N-terminal tail.
Benedetta Dorigo, Thomas Schalch, Kerstin Bystricky, Timothy J Richmond. J Mol Biol 2003
371
13

Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes.
Geeta J Narlikar, Ramasubramanian Sundaramoorthy, Tom Owen-Hughes. Cell 2013
351
13

The biology of chromatin remodeling complexes.
Cedric R Clapier, Bradley R Cairns. Annu Rev Biochem 2009
13

The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA.
Andrew J Barbera, Jayanth V Chodaparambil, Brenna Kelley-Clarke, Vladimir Joukov, Johannes C Walter, Karolin Luger, Kenneth M Kaye. Science 2006
360
13


A conserved mechanism for centromeric nucleosome recognition by centromere protein CENP-C.
Hidenori Kato, Jiansheng Jiang, Bing-Rui Zhou, Marieke Rozendaal, Hanqiao Feng, Rodolfo Ghirlando, T Sam Xiao, Aaron F Straight, Yawen Bai. Science 2013
209
13

New tools for automated high-resolution cryo-EM structure determination in RELION-3.
Jasenko Zivanov, Takanori Nakane, Björn O Forsberg, Dari Kimanius, Wim Jh Hagen, Erik Lindahl, Sjors Hw Scheres. Elife 2018
13

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.
Ali Punjani, John L Rubinstein, David J Fleet, Marcus A Brubaker. Nat Methods 2017
13

Crystal structure of the human centromeric nucleosome containing CENP-A.
Hiroaki Tachiwana, Wataru Kagawa, Tatsuya Shiga, Akihisa Osakabe, Yuta Miya, Kengo Saito, Yoko Hayashi-Takanaka, Takashi Oda, Mamoru Sato, Sam-Yong Park,[...]. Nature 2011
264
13

Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome.
Martin Zofall, Jim Persinger, Stefan R Kassabov, Blaine Bartholomew. Nat Struct Mol Biol 2006
192
11

Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.
Maria L Kireeva, Wendy Walter, Vladimir Tchernajenko, Vladimir Bondarenko, Mikhail Kashlev, Vasily M Studitsky. Mol Cell 2002
303
11

ISWI remodelers slide nucleosomes with coordinated multi-base-pair entry steps and single-base-pair exit steps.
Sebastian Deindl, William L Hwang, Swetansu K Hota, Timothy R Blosser, Punit Prasad, Blaine Bartholomew, Xiaowei Zhuang. Cell 2013
103
11

Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.
Courtney Hodges, Lacramioara Bintu, Lucyna Lubkowska, Mikhail Kashlev, Carlos Bustamante. Science 2009
243
11

Structural basis for histone H2B deubiquitination by the SAGA DUB module.
Michael T Morgan, Mahmood Haj-Yahya, Alison E Ringel, Prasanthi Bandi, Ashraf Brik, Cynthia Wolberger. Science 2016
126
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.