A citation-based method for searching scientific literature

Brian T Kalish, Lucas Cheadle, Sinisa Hrvatin, M Aurel Nagy, Samuel Rivera, Megan Crow, Jesse Gillis, Rory Kirchner, Michael E Greenberg. Proc Natl Acad Sci U S A 2018
Times Cited: 31







List of co-cited articles
315 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-Cell RNA Sequencing.
Hongjie Li, Felix Horns, Bing Wu, Qijing Xie, Jiefu Li, Tongchao Li, David J Luginbuhl, Stephen R Quake, Liqun Luo. Cell 2017
109
25

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
Amit Zeisel, Ana B Muñoz-Manchado, Simone Codeluppi, Peter Lönnerberg, Gioele La Manno, Anna Juréus, Sueli Marques, Hermany Munguba, Liqun He, Christer Betsholtz,[...]. Science 2015
22

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
22

Molecular Architecture of the Mouse Nervous System.
Amit Zeisel, Hannah Hochgerner, Peter Lönnerberg, Anna Johnsson, Fatima Memic, Job van der Zwan, Martin Häring, Emelie Braun, Lars E Borm, Gioele La Manno,[...]. Cell 2018
730
22

Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex.
Sinisa Hrvatin, Daniel R Hochbaum, M Aurel Nagy, Marcelo Cicconet, Keiramarie Robertson, Lucas Cheadle, Rapolas Zilionis, Alex Ratner, Rebeca Borges-Monroy, Allon M Klein,[...]. Nat Neurosci 2018
178
19


Adult mouse cortical cell taxonomy revealed by single cell transcriptomics.
Bosiljka Tasic, Vilas Menon, Thuc Nghi Nguyen, Tae Kyung Kim, Tim Jarsky, Zizhen Yao, Boaz Levi, Lucas T Gray, Staci A Sorensen, Tim Dolbeare,[...]. Nat Neurosci 2016
724
19

Spatial reconstruction of single-cell gene expression data.
Rahul Satija, Jeffrey A Farrell, David Gennert, Alexander F Schier, Aviv Regev. Nat Biotechnol 2015
19

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain.
Arpiar Saunders, Evan Z Macosko, Alec Wysoker, Melissa Goldman, Fenna M Krienen, Heather de Rivera, Elizabeth Bien, Matthew Baum, Laura Bortolin, Shuyu Wang,[...]. Cell 2018
435
19

A survey of human brain transcriptome diversity at the single cell level.
Spyros Darmanis, Steven A Sloan, Ye Zhang, Martin Enge, Christine Caneda, Lawrence M Shuer, Melanie G Hayden Gephart, Ben A Barres, Stephen R Quake. Proc Natl Acad Sci U S A 2015
556
16

Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells.
Gioele La Manno, Daniel Gyllborg, Simone Codeluppi, Kaneyasu Nishimura, Carmen Salto, Amit Zeisel, Lars E Borm, Simon R W Stott, Enrique M Toledo, J Carlos Villaescusa,[...]. Cell 2016
317
16

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
16

Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.
Blue B Lake, Rizi Ai, Gwendolyn E Kaeser, Neeraj S Salathia, Yun C Yung, Rui Liu, Andre Wildberg, Derek Gao, Ho-Lim Fung, Song Chen,[...]. Science 2016
393
16

Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding.
Alexander B Rosenberg, Charles M Roco, Richard A Muscat, Anna Kuchina, Paul Sample, Zizhen Yao, Lucas T Graybuck, David J Peeler, Sumit Mukherjee, Wei Chen,[...]. Science 2018
381
16

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
16


Shared and distinct transcriptomic cell types across neocortical areas.
Bosiljka Tasic, Zizhen Yao, Lucas T Graybuck, Kimberly A Smith, Thuc Nghi Nguyen, Darren Bertagnolli, Jeff Goldy, Emma Garren, Michael N Economo, Sarada Viswanathan,[...]. Nature 2018
417
16

A dedicated circuit links direction-selective retinal ganglion cells to the primary visual cortex.
Alberto Cruz-Martín, Rana N El-Danaf, Fumitaka Osakada, Balaji Sriram, Onkar S Dhande, Phong L Nguyen, Edward M Callaway, Anirvan Ghosh, Andrew D Huberman. Nature 2014
187
16

Morphologically distinct classes of relay cells exhibit regional preferences in the dorsal lateral geniculate nucleus of the mouse.
Thomas E Krahe, Rana N El-Danaf, Emily K Dilger, Scott C Henderson, William Guido. J Neurosci 2011
73
16

A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA.
Blue B Lake, Simone Codeluppi, Yun C Yung, Derek Gao, Jerold Chun, Peter V Kharchenko, Sten Linnarsson, Kun Zhang. Sci Rep 2017
77
12

Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons.
Naomi Habib, Yinqing Li, Matthias Heidenreich, Lukasz Swiech, Inbal Avraham-Davidi, John J Trombetta, Cynthia Hession, Feng Zhang, Aviv Regev. Science 2016
240
12

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
480
12

Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes.
János Fuzik, Amit Zeisel, Zoltán Máté, Daniela Calvigioni, Yuchio Yanagawa, Gábor Szabó, Sten Linnarsson, Tibor Harkany. Nat Biotechnol 2016
190
12

Massively parallel single-nucleus RNA-seq with DroNc-seq.
Naomi Habib, Inbal Avraham-Davidi, Anindita Basu, Tyler Burks, Karthik Shekhar, Matan Hofree, Sourav R Choudhury, François Aguet, Ellen Gelfand, Kristin Ardlie,[...]. Nat Methods 2017
342
12

Reversed graph embedding resolves complex single-cell trajectories.
Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A Pliner, Cole Trapnell. Nat Methods 2017
766
12

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
12

Single-cell chromatin accessibility reveals principles of regulatory variation.
Jason D Buenrostro, Beijing Wu, Ulrike M Litzenburger, Dave Ruff, Michael L Gonzales, Michael P Snyder, Howard Y Chang, William J Greenleaf. Nature 2015
800
12



LRRTM1 underlies synaptic convergence in visual thalamus.
Aboozar Monavarfeshani, Gail Stanton, Jonathan Van Name, Kaiwen Su, William A Mills, Kenya Swilling, Alicia Kerr, Natalie A Huebschman, Jianmin Su, Michael A Fox. Elife 2018
18
22

The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus.
Josh Lyskowski Morgan, Daniel Raimund Berger, Arthur Willis Wetzel, Jeff William Lichtman. Cell 2016
104
12

Building a bridal chamber: development of the thalamus.
Steffen Scholpp, Andrew Lumsden. Trends Neurosci 2010
70
12

Tectal-derived interneurons contribute to phasic and tonic inhibition in the visual thalamus.
Polona Jager, Zhiwen Ye, Xiao Yu, Laskaro Zagoraiou, Hong-Ting Prekop, Juha Partanen, Thomas M Jessell, William Wisden, Stephen G Brickley, Alessio Delogu. Nat Commun 2016
28
14

SCANPY: large-scale single-cell gene expression data analysis.
F Alexander Wolf, Philipp Angerer, Fabian J Theis. Genome Biol 2018
759
12

Diverse visual features encoded in mouse lateral geniculate nucleus.
Denise M Piscopo, Rana N El-Danaf, Andrew D Huberman, Cristopher M Niell. J Neurosci 2013
193
12

Visual Experience-Dependent Expression of Fn14 Is Required for Retinogeniculate Refinement.
Lucas Cheadle, Christopher P Tzeng, Brian T Kalish, David A Harmin, Samuel Rivera, Emi Ling, M Aurel Nagy, Sinisa Hrvatin, Linda Hu, Hume Stroud,[...]. Neuron 2018
17
23

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina.
Yi-Rong Peng, Karthik Shekhar, Wenjun Yan, Dustin Herrmann, Anna Sappington, Gregory S Bryman, Tavé van Zyl, Michael Tri H Do, Aviv Regev, Joshua R Sanes. Cell 2019
131
12

Nuclear RNA-seq of single neurons reveals molecular signatures of activation.
Benjamin Lacar, Sara B Linker, Baptiste N Jaeger, Suguna R Krishnaswami, Jerika J Barron, Martijn J E Kelder, Sarah L Parylak, Apuã C M Paquola, Pratap Venepally, Mark Novotny,[...]. Nat Commun 2016
176
9

Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis.
Jaehoon Shin, Daniel A Berg, Yunhua Zhu, Joseph Y Shin, Juan Song, Michael A Bonaguidi, Grigori Enikolopov, David W Nauen, Kimberly M Christian, Guo-li Ming,[...]. Cell Stem Cell 2015
394
9

Comprehensive single-cell transcriptional profiling of a multicellular organism.
Junyue Cao, Jonathan S Packer, Vijay Ramani, Darren A Cusanovich, Chau Huynh, Riza Daza, Xiaojie Qiu, Choli Lee, Scott N Furlan, Frank J Steemers,[...]. Science 2017
456
9

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.
Diego Adhemar Jaitin, Ephraim Kenigsberg, Hadas Keren-Shaul, Naama Elefant, Franziska Paul, Irina Zaretsky, Alexander Mildner, Nadav Cohen, Steffen Jung, Amos Tanay,[...]. Science 2014
877
9

The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas.
Joseph R Ecker, Daniel H Geschwind, Arnold R Kriegstein, John Ngai, Pavel Osten, Damon Polioudakis, Aviv Regev, Nenad Sestan, Ian R Wickersham, Hongkui Zeng. Neuron 2017
110
9

Early emergence of cortical interneuron diversity in the mouse embryo.
Da Mi, Zhen Li, Lynette Lim, Mingfeng Li, Monika Moissidis, Yifei Yang, Tianliuyun Gao, Tim Xiaoming Hu, Thomas Pratt, David J Price,[...]. Science 2018
95
9

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex.
Tomasz J Nowakowski, Aparna Bhaduri, Alex A Pollen, Beatriz Alvarado, Mohammed A Mostajo-Radji, Elizabeth Di Lullo, Maximilian Haeussler, Carmen Sandoval-Espinosa, Siyuan John Liu, Dmitry Velmeshev,[...]. Science 2017
295
9

A Single-Cell RNA Sequencing Study Reveals Cellular and Molecular Dynamics of the Hippocampal Neurogenic Niche.
Benedetta Artegiani, Anna Lyubimova, Mauro Muraro, Johan H van Es, Alexander van Oudenaarden, Hans Clevers. Cell Rep 2017
85
9

mRNA-Seq whole-transcriptome analysis of a single cell.
Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B Tuch, Asim Siddiqui,[...]. Nat Methods 2009
9

Continuous Variation within Cell Types of the Nervous System.
Mark S Cembrowski, Vilas Menon. Trends Neurosci 2018
29
10

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq.
Cathryn R Cadwell, Athanasia Palasantza, Xiaolong Jiang, Philipp Berens, Qiaolin Deng, Marlene Yilmaz, Jacob Reimer, Shan Shen, Matthias Bethge, Kimberley F Tolias,[...]. Nat Biotechnol 2016
227
9

Detecting Activated Cell Populations Using Single-Cell RNA-Seq.
Ye Emily Wu, Lin Pan, Yanning Zuo, Xinmin Li, Weizhe Hong. Neuron 2017
137
9

Cellular Taxonomy of the Mouse Striatum as Revealed by Single-Cell RNA-Seq.
Ozgun Gokce, Geoffrey M Stanley, Barbara Treutlein, Norma F Neff, J Gray Camp, Robert C Malenka, Patrick E Rothwell, Marc V Fuccillo, Thomas C Südhof, Stephen R Quake. Cell Rep 2016
182
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.