A citation-based method for searching scientific literature

Yathish Jagadheesh Achar, Marco Foiani. Adv Exp Med Biol 2017
Times Cited: 8







List of co-cited articles
16 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
225
37



The Saccharomyces cerevisiae helicase Rrm3p facilitates replication past nonhistone protein-DNA complexes.
Andreas S Ivessa, Brian A Lenzmeier, Jessica B Bessler, Lara K Goudsouzian, Sandra L Schnakenberg, Virginia A Zakian. Mol Cell 2003
305
25

Dormant origins and fork protection mechanisms rescue sister forks arrested by transcription.
Alessandra Brambati, Luca Zardoni, Yathish Jagadheesh Achar, Daniele Piccini, Lorenzo Galanti, Arianna Colosio, Marco Foiani, Giordano Liberi. Nucleic Acids Res 2018
23
25

Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes.
Amaya Alzu, Rodrigo Bermejo, Martina Begnis, Chiara Lucca, Daniele Piccini, Walter Carotenuto, Marco Saponaro, Alessandra Brambati, Andrea Cocito, Marco Foiani,[...]. Cell 2012
150
25

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
194
25


R loops: from transcription byproducts to threats to genome stability.
Andrés Aguilera, Tatiana García-Muse. Mol Cell 2012
574
25

Repair Pathway Choices and Consequences at the Double-Strand Break.
Raphael Ceccaldi, Beatrice Rondinelli, Alan D D'Andrea. Trends Cell Biol 2016
666
25

ROS-induced R loops trigger a transcription-coupled but BRCA1/2-independent homologous recombination pathway through CSB.
Yaqun Teng, Tribhuwan Yadav, Meihan Duan, Jun Tan, Yufei Xiang, Boya Gao, Jianquan Xu, Zhuobin Liang, Yang Liu, Satoshi Nakajima,[...]. Nat Commun 2018
54
25

Replication-Transcription Conflicts Generate R-Loops that Orchestrate Bacterial Stress Survival and Pathogenesis.
Kevin S Lang, Ashley N Hall, Christopher N Merrikh, Mark Ragheb, Hannah Tabakh, Alex J Pollock, Joshua J Woodward, Julia E Dreifus, Houra Merrikh. Cell 2017
107
25

DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks.
Tibor Pankotai, Céline Bonhomme, David Chen, Evi Soutoglou. Nat Struct Mol Biol 2012
150
25

The yeast and human FACT chromatin-reorganizing complexes solve R-loop-mediated transcription-replication conflicts.
Emilia Herrera-Moyano, Xénia Mergui, María L García-Rubio, Sonia Barroso, Andrés Aguilera. Genes Dev 2014
103
25

Transcription shapes DNA replication initiation and termination in human cells.
Yu-Hung Chen, Sarah Keegan, Malik Kahli, Peter Tonzi, David Fenyö, Tony T Huang, Duncan J Smith. Nat Struct Mol Biol 2019
44
25

Transcription-replication conflicts: how they occur and how they are resolved.
Tatiana García-Muse, Andrés Aguilera. Nat Rev Mol Cell Biol 2016
170
25


Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres.
Pierre Therizols, Tarn Duong, Bernard Dujon, Christophe Zimmer, Emmanuelle Fabre. Proc Natl Acad Sci U S A 2010
93
12

Clustering of yeast tRNA genes is mediated by specific association of condensin with tRNA gene transcription complexes.
Rebecca A Haeusler, Matthew Pratt-Hyatt, Paul D Good, Theresa A Gipson, David R Engelke. Genes Dev 2008
170
12


DNA polymerase epsilon, acetylases and remodellers cooperate to form a specialized chromatin structure at a tRNA insulator.
Namrita Dhillon, Jesse Raab, Julie Guzzo, Shawn J Szyjka, Sunil Gangadharan, Oscar M Aparicio, Brenda Andrews, Rohinton T Kamakaka. EMBO J 2009
40
12

Chromosome positioning and the clustering of functionally related loci in yeast is driven by chromosomal interactions.
Lutz R Gehlen, Gerd Gruenert, M Beatrix Jones, Chris D Rodley, Jörg Langowski, J M O'Sullivan. Nucleus 2012
43
12

Increased mobility of double-strand breaks requires Mec1, Rad9 and the homologous recombination machinery.
Vincent Dion, Véronique Kalck, Chihiro Horigome, Benjamin D Towbin, Susan M Gasser. Nat Cell Biol 2012
200
12

Increased chromosome mobility facilitates homology search during recombination.
Judith Miné-Hattab, Rodney Rothstein. Nat Cell Biol 2012
221
12

Protosilencers in Saccharomyces cerevisiae subtelomeric regions.
E Lebrun, E Revardel, C Boscheron, R Li, E Gilson, G Fourel. Genetics 2001
29
12

tDNA insulators and the emerging role of TFIIIC in genome organization.
Kevin Van Bortle, Victor G Corces. Transcription 2012
29
12


Systematic characterization of the conformation and dynamics of budding yeast chromosome XII.
Benjamin Albert, Julien Mathon, Ashutosh Shukla, Hicham Saad, Christophe Normand, Isabelle Léger-Silvestre, David Villa, Alain Kamgoue, Julien Mozziconacci, Hua Wong,[...]. J Cell Biol 2013
37
12


Centromeric localization of dispersed Pol III genes in fission yeast.
Osamu Iwasaki, Atsunari Tanaka, Hideki Tanizawa, Shiv I S Grewal, Ken-Ichi Noma. Mol Biol Cell 2010
94
12

Identification of cis-acting sites for condensin loading onto budding yeast chromosomes.
Claudio D'Ambrosio, Christine Katrin Schmidt, Yuki Katou, Gavin Kelly, Takehiko Itoh, Katsuhiko Shirahige, Frank Uhlmann. Genes Dev 2008
242
12

TFIIIC binding sites function as both heterochromatin barriers and chromatin insulators in Saccharomyces cerevisiae.
Tiffany A Simms, Sandra L Dugas, Jason C Gremillion, Megan E Ibos, M Nicole Dandurand, Tasha T Toliver, Daniel J Edwards, David Donze. Eukaryot Cell 2008
61
12

Cycles of chromosome instability are associated with a fragile site and are increased by defects in DNA replication and checkpoint controls in yeast.
Anthony Admire, Lisa Shanks, Nicole Danzl, Mei Wang, Ulli Weier, William Stevens, Elizabeth Hunt, Ted Weinert. Genes Dev 2006
104
12

The mobile nucleoporin Nup2p and chromatin-bound Prp20p function in endogenous NPC-mediated transcriptional control.
David J Dilworth, Alan J Tackett, Richard S Rogers, Eugene C Yi, Rowan H Christmas, Jennifer J Smith, Andrew F Siegel, Brian T Chait, Richard W Wozniak, John D Aitchison. J Cell Biol 2005
89
12

The Scc2-Scc4 complex acts in sister chromatid cohesion and transcriptional regulation by maintaining nucleosome-free regions.
Lidia Lopez-Serra, Gavin Kelly, Harshil Patel, Aengus Stewart, Frank Uhlmann. Nat Genet 2014
87
12

Centromere position in budding yeast: evidence for anaphase A.
V Guacci, E Hogan, D Koshland. Mol Biol Cell 1997
83
12

A three-dimensional model of the yeast genome.
Zhijun Duan, Mirela Andronescu, Kevin Schutz, Sean McIlwain, Yoo Jung Kim, Choli Lee, Jay Shendure, Stanley Fields, C Anthony Blau, William S Noble. Nature 2010
610
12

Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome.
Tsung-Han S Hsieh, Geoffrey Fudenberg, Anton Goloborodko, Oliver J Rando. Nat Methods 2016
66
12

Differential analysis of RNA-seq incorporating quantification uncertainty.
Harold Pimentel, Nicolas L Bray, Suzette Puente, Páll Melsted, Lior Pachter. Nat Methods 2017
554
12


Transcription independent insulation at TFIIIC-dependent insulators.
Lourdes Valenzuela, Namrita Dhillon, Rohinton T Kamakaka. Genetics 2009
42
12

Centromere tethering confines chromosome domains.
Jolien Suzanne Verdaasdonk, Paula Andrea Vasquez, Raymond Mario Barry, Timothy Barry, Scott Goodwin, M Gregory Forest, Kerry Bloom. Mol Cell 2013
55
12

Chromosomal translocations in yeast induced by low levels of DNA polymerase a model for chromosome fragile sites.
Francene J Lemoine, Natasha P Degtyareva, Kirill Lobachev, Thomas D Petes. Cell 2005
239
12

An Overview of Genome Organization and How We Got There: from FISH to Hi-C.
James Fraser, Iain Williamson, Wendy A Bickmore, Josée Dostie. Microbiol Mol Biol Rev 2015
117
12

SMC complexes differentially compact mitotic chromosomes according to genomic context.
Stephanie Andrea Schalbetter, Anton Goloborodko, Geoffrey Fudenberg, Jon-Matthew Belton, Catrina Miles, Miao Yu, Job Dekker, Leonid Mirny, Jonathan Baxter. Nat Cell Biol 2017
65
12

Genome organization in three dimensions: thinking outside the line.
Rebecca A Haeusler, David R Engelke. Cell Cycle 2004
15
12

Evolution of tRNA-like sequences and genome variability.
Felix E Frenkel, Maria B Chaley, Eugene V Korotkov, Konstantin G Skryabin. Gene 2004
16
12


Analyses of SUM1-1-mediated long-range repression.
Lourdes Valenzuela, Sunil Gangadharan, Rohinton T Kamakaka. Genetics 2006
9
12

Systematic identification of fragile sites via genome-wide location analysis of gamma-H2AX.
Rachel K Szilard, Pierre-Etienne Jacques, Louise Laramée, Benjamin Cheng, Sarah Galicia, Alain R Bataille, ManTek Yeung, Megan Mendez, Maxime Bergeron, François Robert,[...]. Nat Struct Mol Biol 2010
145
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.