A citation-based method for searching scientific literature

Yu Tahara, Mayu Yamazaki, Haruna Sukigara, Hiroaki Motohashi, Hiroyuki Sasaki, Hiroki Miyakawa, Atsushi Haraguchi, Yuko Ikeda, Shinji Fukuda, Shigenobu Shibata. Sci Rep 2018
Times Cited: 121







List of co-cited articles
1207 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis.
Christoph A Thaiss, David Zeevi, Maayan Levy, Gili Zilberman-Schapira, Jotham Suez, Anouk C Tengeler, Lior Abramson, Meirav N Katz, Tal Korem, Niv Zmora,[...]. Cell 2014
649
57

Effects of diurnal variation of gut microbes and high-fat feeding on host circadian clock function and metabolism.
Vanessa Leone, Sean M Gibbons, Kristina Martinez, Alan L Hutchison, Edmond Y Huang, Candace M Cham, Joseph F Pierre, Aaron F Heneghan, Anuradha Nadimpalli, Nathaniel Hubert,[...]. Cell Host Microbe 2015
417
52

Diet and feeding pattern affect the diurnal dynamics of the gut microbiome.
Amir Zarrinpar, Amandine Chaix, Shibu Yooseph, Satchidananda Panda. Cell Metab 2014
430
40

Rhythmicity of the intestinal microbiota is regulated by gender and the host circadian clock.
Xue Liang, Frederic D Bushman, Garret A FitzGerald. Proc Natl Acad Sci U S A 2015
270
39

Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.
Christoph A Thaiss, Maayan Levy, Tal Korem, Lenka Dohnalová, Hagit Shapiro, Diego A Jaitin, Eyal David, Deborah R Winter, Meital Gury-BenAri, Evgeny Tatirovsky,[...]. Cell 2016
385
31

Circadian disorganization alters intestinal microbiota.
Robin M Voigt, Christopher B Forsyth, Stefan J Green, Ece Mutlu, Phillip Engen, Martha H Vitaterna, Fred W Turek, Ali Keshavarzian. PLoS One 2014
236
27


High-fat diet disrupts behavioral and molecular circadian rhythms in mice.
Akira Kohsaka, Aaron D Laposky, Kathryn Moynihan Ramsey, Carmela Estrada, Corinne Joshu, Yumiko Kobayashi, Fred W Turek, Joseph Bass. Cell Metab 2007
967
23

The circadian clock regulates the diurnal levels of microbial short-chain fatty acids and their rhythmic effects on colon contractility in mice.
Anneleen Segers, Louis Desmet, Theo Thijs, Kristin Verbeke, Jan Tack, Inge Depoortere. Acta Physiol (Oxf) 2019
42
52

The intestinal microbiota programs diurnal rhythms in host metabolism through histone deacetylase 3.
Zheng Kuang, Yuhao Wang, Yun Li, Cunqi Ye, Kelly A Ruhn, Cassie L Behrendt, Eric N Olson, Lora V Hooper. Science 2019
123
20

Time-restricted feeding without reducing caloric intake prevents metabolic diseases in mice fed a high-fat diet.
Megumi Hatori, Christopher Vollmers, Amir Zarrinpar, Luciano DiTacchio, Eric A Bushong, Shubhroz Gill, Mathias Leblanc, Amandine Chaix, Matthew Joens, James A J Fitzpatrick,[...]. Cell Metab 2012
19

The intestinal microbiota regulates body composition through NFIL3 and the circadian clock.
Yuhao Wang, Zheng Kuang, Xiaofei Yu, Kelly A Ruhn, Masato Kubo, Lora V Hooper. Science 2017
208
19

Unconjugated Bile Acids Influence Expression of Circadian Genes: A Potential Mechanism for Microbe-Host Crosstalk.
Kalaimathi Govindarajan, John MacSharry, Patrick G Casey, Fergus Shanahan, Susan A Joyce, Cormac G M Gahan. PLoS One 2016
65
29

Potential Role for the Gut Microbiota in Modulating Host Circadian Rhythms and Metabolic Health.
Shanthi G Parkar, Andries Kalsbeek, James F Cheeseman. Microorganisms 2019
108
18

Obesity and metabolic syndrome in circadian Clock mutant mice.
Fred W Turek, Corinne Joshu, Akira Kohsaka, Emily Lin, Ganka Ivanova, Erin McDearmon, Aaron Laposky, Sue Losee-Olson, Amy Easton, Dalan R Jensen,[...]. Science 2005
18

Circadian Disruption Changes Gut Microbiome Taxa and Functional Gene Composition.
Jessica A Deaver, Sung Y Eum, Michal Toborek. Front Microbiol 2018
94
18


An obesity-associated gut microbiome with increased capacity for energy harvest.
Peter J Turnbaugh, Ruth E Ley, Michael A Mahowald, Vincent Magrini, Elaine R Mardis, Jeffrey I Gordon. Nature 2006
15

The Circadian Clock Mutation Promotes Intestinal Dysbiosis.
Robin M Voigt, Keith C Summa, Christopher B Forsyth, Stefan J Green, Phillip Engen, Ankur Naqib, Martha H Vitaterna, Fred W Turek, Ali Keshavarzian. Alcohol Clin Exp Res 2016
88
15


Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes.
Biliana Marcheva, Kathryn Moynihan Ramsey, Ethan D Buhr, Yumiko Kobayashi, Hong Su, Caroline H Ko, Ganka Ivanova, Chiaki Omura, Shelley Mo, Martha H Vitaterna,[...]. Nature 2010
966
14

Diet rapidly and reproducibly alters the human gut microbiome.
Lawrence A David, Corinne F Maurice, Rachel N Carmody, David B Gootenberg, Julie E Button, Benjamin E Wolfe, Alisha V Ling, A Sloan Devlin, Yug Varma, Michael A Fischbach,[...]. Nature 2014
13

Circadian integration of metabolism and energetics.
Joseph Bass, Joseph S Takahashi. Science 2010
13

Disruption of the Circadian Clock in Mice Increases Intestinal Permeability and Promotes Alcohol-Induced Hepatic Pathology and Inflammation.
Keith C Summa, Robin M Voigt, Christopher B Forsyth, Maliha Shaikh, Kate Cavanaugh, Yueming Tang, Martha Hotz Vitaterna, Shiwen Song, Fred W Turek, Ali Keshavarzian. PLoS One 2013
152
13

Gut microbiota directs PPARγ-driven reprogramming of the liver circadian clock by nutritional challenge.
Mari Murakami, Paola Tognini, Yu Liu, Kristin L Eckel-Mahan, Pierre Baldi, Paolo Sassone-Corsi. EMBO Rep 2016
89
14

Time-Restricted Feeding Prevents Obesity and Metabolic Syndrome in Mice Lacking a Circadian Clock.
Amandine Chaix, Terry Lin, Hiep D Le, Max W Chang, Satchidananda Panda. Cell Metab 2019
258
13

The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism.
Benjamin D Weger, Cédric Gobet, Jake Yeung, Eva Martin, Sonia Jimenez, Bertrand Betrisey, Francis Foata, Bernard Berger, Aurélie Balvay, Anne Foussier,[...]. Cell Metab 2019
115
12

Reprogramming of the circadian clock by nutritional challenge.
Kristin L Eckel-Mahan, Vishal R Patel, Sara de Mateo, Ricardo Orozco-Solis, Nicholas J Ceglia, Saurabh Sahar, Sherry A Dilag-Penilla, Kenneth A Dyar, Pierre Baldi, Paolo Sassone-Corsi. Cell 2013
411
12


Entrainment of the circadian clock in the liver by feeding.
K A Stokkan, S Yamazaki, H Tei, Y Sakaki, M Menaker. Science 2001
12

Human Gut Bacteria Are Sensitive to Melatonin and Express Endogenous Circadian Rhythmicity.
Jiffin K Paulose, John M Wright, Akruti G Patel, Vincent M Cassone. PLoS One 2016
107
11

The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism.
Gijs den Besten, Karen van Eunen, Albert K Groen, Koen Venema, Dirk-Jan Reijngoud, Barbara M Bakker. J Lipid Res 2013
11

The gut microbiota as an environmental factor that regulates fat storage.
Fredrik Bäckhed, Hao Ding, Ting Wang, Lora V Hooper, Gou Young Koh, Andras Nagy, Clay F Semenkovich, Jeffrey I Gordon. Proc Natl Acad Sci U S A 2004
11

A circadian gene expression atlas in mammals: implications for biology and medicine.
Ray Zhang, Nicholas F Lahens, Heather I Ballance, Michael E Hughes, John B Hogenesch. Proc Natl Acad Sci U S A 2014
10

Adverse metabolic and cardiovascular consequences of circadian misalignment.
Frank A J L Scheer, Michael F Hilton, Christos S Mantzoros, Steven A Shea. Proc Natl Acad Sci U S A 2009
10

Central and peripheral circadian clocks in mammals.
Jennifer A Mohawk, Carla B Green, Joseph S Takahashi. Annu Rev Neurosci 2012
10

Clock gene expression in the murine gastrointestinal tract: endogenous rhythmicity and effects of a feeding regimen.
Willemijntje A Hoogerwerf, Helen L Hellmich, Germaine Cornélissen, Franz Halberg, Vahakn B Shahinian, Jonathon Bostwick, Tor C Savidge, Vincent M Cassone. Gastroenterology 2007
177
10

Hepatic circadian clock oscillators and nuclear receptors integrate microbiome-derived signals.
Alexandra Montagner, Agata Korecka, Arnaud Polizzi, Yannick Lippi, Yuna Blum, Cécile Canlet, Marie Tremblay-Franco, Amandine Gautier-Stein, Rémy Burcelin, Yi-Chun Yen,[...]. Sci Rep 2016
72
13

PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues.
Seung-Hee Yoo, Shin Yamazaki, Phillip L Lowrey, Kazuhiro Shimomura, Caroline H Ko, Ethan D Buhr, Sandra M Siepka, Hee-Kyung Hong, Won Jun Oh, Ook Joon Yoo,[...]. Proc Natl Acad Sci U S A 2004
10

Short chain fatty acids in human large intestine, portal, hepatic and venous blood.
J H Cummings, E W Pomare, W J Branch, C P Naylor, G T Macfarlane. Gut 1987
10

Physiological significance of a peripheral tissue circadian clock.
Katja A Lamia, Kai-Florian Storch, Charles J Weitz. Proc Natl Acad Sci U S A 2008
721
10

Short-chain fatty acids stimulate glucagon-like peptide-1 secretion via the G-protein-coupled receptor FFAR2.
Gwen Tolhurst, Helen Heffron, Yu Shan Lam, Helen E Parker, Abdella M Habib, Eleftheria Diakogiannaki, Jennifer Cameron, Johannes Grosse, Frank Reimann, Fiona M Gribble. Diabetes 2012
10

From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites.
Ara Koh, Filipe De Vadder, Petia Kovatcheva-Datchary, Fredrik Bäckhed. Cell 2016
10


Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis.
Jessica M Yano, Kristie Yu, Gregory P Donaldson, Gauri G Shastri, Phoebe Ann, Liang Ma, Cathryn R Nagler, Rustem F Ismagilov, Sarkis K Mazmanian, Elaine Y Hsiao. Cell 2015
9

Regulation of host weight gain and lipid metabolism by bacterial bile acid modification in the gut.
Susan A Joyce, John MacSharry, Patrick G Casey, Michael Kinsella, Eileen F Murphy, Fergus Shanahan, Colin Hill, Cormac G M Gahan. Proc Natl Acad Sci U S A 2014
334
9

Light exposure influences the diurnal oscillation of gut microbiota in mice.
Guangyan Wu, Wenli Tang, Yan He, Jingjuan Hu, Shenhai Gong, Zhanke He, Guoquan Wei, Liyi Lv, Yong Jiang, Hongwei Zhou,[...]. Biochem Biophys Res Commun 2018
38
23

Meal Timing Regulates the Human Circadian System.
Sophie M T Wehrens, Skevoulla Christou, Cheryl Isherwood, Benita Middleton, Michelle A Gibbs, Simon N Archer, Debra J Skene, Jonathan D Johnston. Curr Biol 2017
226
9

Obesity in mice with adipocyte-specific deletion of clock component Arntl.
Georgios K Paschos, Salam Ibrahim, Wen-Liang Song, Takeshige Kunieda, Gregory Grant, Teresa M Reyes, Christopher A Bradfield, Cheryl H Vaughan, Michael Eiden, Mojgan Masoodi,[...]. Nat Med 2012
287
9

Circadian Rhythm and the Gut Microbiome.
R M Voigt, C B Forsyth, S J Green, P A Engen, A Keshavarzian. Int Rev Neurobiol 2016
105
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.