A citation-based method for searching scientific literature

Andrew Soper, Izumi Kimura, Shumpei Nagaoka, Yoriyuki Konno, Keisuke Yamamoto, Yoshio Koyanagi, Kei Sato. Front Immunol 2018
Times Cited: 29







List of co-cited articles
227 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


HIV-1 and interferons: who's interfering with whom?
Tomas Doyle, Caroline Goujon, Michael H Malim. Nat Rev Microbiol 2015
180
31

Global genomic analysis reveals rapid control of a robust innate response in SIV-infected sooty mangabeys.
Steven E Bosinger, Qingsheng Li, Shari N Gordon, Nichole R Klatt, Lijie Duan, Luoling Xu, Nicholas Francella, Abubaker Sidahmed, Anthony J Smith, Elizabeth M Cramer,[...]. J Clin Invest 2009
280
20

Resistance to type 1 interferons is a major determinant of HIV-1 transmission fitness.
Shilpa S Iyer, Frederic Bibollet-Ruche, Scott Sherrill-Mix, Gerald H Learn, Lindsey Plenderleith, Andrew G Smith, Hannah J Barbian, Ronnie M Russell, Marcos V P Gondim, Catherine Y Bahari,[...]. Proc Natl Acad Sci U S A 2017
88
20

Innate immunity against HIV-1 infection.
Marcus Altfeld, Michael Gale. Nat Immunol 2015
116
17

Blocking type I interferon signaling enhances T cell recovery and reduces HIV-1 reservoirs.
Liang Cheng, Jianping Ma, Jingyun Li, Dan Li, Guangming Li, Feng Li, Qing Zhang, Haisheng Yu, Fumihiko Yasui, Chaobaihui Ye,[...]. J Clin Invest 2017
98
17

Type I interferon: understanding its role in HIV pathogenesis and therapy.
Steven E Bosinger, Netanya S Utay. Curr HIV/AIDS Rep 2015
54
17

Tetherin inhibits retrovirus release and is antagonized by HIV-1 Vpu.
Stuart J D Neil, Trinity Zang, Paul D Bieniasz. Nature 2008
17

Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway.
Lijun Sun, Jiaxi Wu, Fenghe Du, Xiang Chen, Zhijian J Chen. Science 2013
17

Virus interference. I. The interferon.
A ISAACS, J LINDENMANN. Proc R Soc Lond B Biol Sci 1957
17

Tumor Interferon Signaling Regulates a Multigenic Resistance Program to Immune Checkpoint Blockade.
Joseph L Benci, Bihui Xu, Yu Qiu, Tony J Wu, Hannah Dada, Christina Twyman-Saint Victor, Lisa Cucolo, David S M Lee, Kristen E Pauken, Alexander C Huang,[...]. Cell 2016
460
17

Interferon-stimulated genes: a complex web of host defenses.
William M Schneider, Meike Dittmann Chevillotte, Charles M Rice. Annu Rev Immunol 2014
13

Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein.
Kasia Hrecka, Caili Hao, Magda Gierszewska, Selene K Swanson, Malgorzata Kesik-Brodacka, Smita Srivastava, Laurence Florens, Michael P Washburn, Jacek Skowronski. Nature 2011
836
13

SAMHD1 is the dendritic- and myeloid-cell-specific HIV-1 restriction factor counteracted by Vpx.
Nadine Laguette, Bijan Sobhian, Nicoletta Casartelli, Mathieu Ringeard, Christine Chable-Bessia, Emmanuel Ségéral, Ahmad Yatim, Stéphane Emiliani, Olivier Schwartz, Monsef Benkirane. Nature 2011
13

Type I interferon responses in rhesus macaques prevent SIV infection and slow disease progression.
Netanya G Sandler, Steven E Bosinger, Jacob D Estes, Richard T R Zhu, Gregory K Tharp, Eli Boritz, Doron Levin, Sathi Wijeyesinghe, Krystelle Nganou Makamdop, Gregory Q del Prete,[...]. Nature 2014
309
13

Interferons, interferon-like cytokines, and their receptors.
Sidney Pestka, Christopher D Krause, Mark R Walter. Immunol Rev 2004
13

Induction of a striking systemic cytokine cascade prior to peak viremia in acute human immunodeficiency virus type 1 infection, in contrast to more modest and delayed responses in acute hepatitis B and C virus infections.
Andrea R Stacey, Philip J Norris, Li Qin, Elizabeth A Haygreen, Elizabeth Taylor, John Heitman, Mila Lebedeva, Allan DeCamp, Dongfeng Li, Douglas Grove,[...]. J Virol 2009
504
13

Gene therapy with plasmids encoding IFN-β or IFN-α14 confers long-term resistance to HIV-1 in humanized mice.
Sojan Abraham, Jang-Gi Choi, Nora M Ortega, Junli Zhang, Premlata Shankar, N Manjunath Swamy. Oncotarget 2016
20
20

Interferon Alpha Subtype-Specific Suppression of HIV-1 Infection In Vivo.
Kerry J Lavender, Kathrin Gibbert, Karin E Peterson, Erik Van Dis, Sandra Francois, Tyson Woods, Ronald J Messer, Ali Gawanbacht, Janis A Müller, Jan Münch,[...]. J Virol 2016
70
13

Targeting type I interferon-mediated activation restores immune function in chronic HIV infection.
Anjie Zhen, Valerie Rezek, Cindy Youn, Brianna Lam, Nelson Chang, Jonathan Rick, Mayra Carrillo, Heather Martin, Saro Kasparian, Philip Syed,[...]. J Clin Invest 2017
95
13

A diverse range of gene products are effectors of the type I interferon antiviral response.
John W Schoggins, Sam J Wilson, Maryline Panis, Mary Y Murphy, Christopher T Jones, Paul Bieniasz, Charles M Rice. Nature 2011
13

Interferons and HIV Infection: The Good, the Bad, and the Ugly.
Netanya S Utay, Daniel C Douek. Pathog Immun 2016
40
13

Interferon-α is the primary plasma type-I IFN in HIV-1 infection and correlates with immune activation and disease markers.
Gareth A D Hardy, Scott Sieg, Benigno Rodriguez, Donald Anthony, Robert Asaad, Wei Jiang, Joseph Mudd, Timothy Schacker, Nicholas T Funderburg, Heather A Pilch-Cooper,[...]. PLoS One 2013
102
13

Cyclic GMP-AMP synthase is an innate immune sensor of HIV and other retroviruses.
Daxing Gao, Jiaxi Wu, You-Tong Wu, Fenghe Du, Chukwuemika Aroh, Nan Yan, Lijun Sun, Zhijian J Chen. Science 2013
606
13

Type I interferons suppress viral replication but contribute to T cell depletion and dysfunction during chronic HIV-1 infection.
Liang Cheng, Haisheng Yu, Guangming Li, Feng Li, Jianping Ma, Jingyun Li, Liqun Chi, Liguo Zhang, Lishan Su. JCI Insight 2017
47
13

Chronic CD4+ T-cell activation and depletion in human immunodeficiency virus type 1 infection: type I interferon-mediated disruption of T-cell dynamics.
Ahmad R Sedaghat, Jennifer German, Tanya M Teslovich, Joseph Cofrancesco, Chunfa C Jie, C Conover Talbot, Robert F Siliciano. J Virol 2008
129
13

HIV-1 evades innate immune recognition through specific cofactor recruitment.
Jane Rasaiyaah, Choon Ping Tan, Adam J Fletcher, Amanda J Price, Caroline Blondeau, Laura Hilditch, David A Jacques, David L Selwood, Leo C James, Mahdad Noursadeghi,[...]. Nature 2013
295
13

Binding and activity of all human alpha interferon subtypes.
Thomas B Lavoie, Eyal Kalie, Sara Crisafulli-Cabatu, Renne Abramovich, Gina DiGioia, Karlene Moolchan, Sidney Pestka, Gideon Schreiber. Cytokine 2011
110
13

Constitutive type I interferon modulates homeostatic balance through tonic signaling.
Daniel J Gough, Nicole L Messina, Christopher J P Clarke, Ricky W Johnstone, David E Levy. Immunity 2012
265
13


Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection.
Jesus F Salazar-Gonzalez, Maria G Salazar, Brandon F Keele, Gerald H Learn, Elena E Giorgi, Hui Li, Julie M Decker, Shuyi Wang, Joshua Baalwa, Matthias H Kraus,[...]. J Exp Med 2009
560
10

Macrophage infection via selective capture of HIV-1-infected CD4+ T cells.
Amy E Baxter, Rebecca A Russell, Christopher J A Duncan, Michael D Moore, Christian B Willberg, Jose L Pablos, Andrés Finzi, Daniel E Kaufmann, Christina Ochsenbauer, John C Kappes,[...]. Cell Host Microbe 2014
110
10


IFNβ-dependent increases in STAT1, STAT2, and IRF9 mediate resistance to viruses and DNA damage.
HyeonJoo Cheon, Elise G Holvey-Bates, John W Schoggins, Samuel Forster, Paul Hertzog, Naoko Imanaka, Charles M Rice, Mark W Jackson, Damian J Junk, George R Stark. EMBO J 2013
171
10

Intrinsic host restrictions to HIV-1 and mechanisms of viral escape.
Viviana Simon, Nicolin Bloch, Nathaniel R Landau. Nat Immunol 2015
186
10

Detection of interferon alpha protein reveals differential levels and cellular sources in disease.
Mathieu P Rodero, Jérémie Decalf, Vincent Bondet, David Hunt, Gillian I Rice, Scott Werneke, Sarah L McGlasson, Marie-Alexandra Alyanakian, Brigitte Bader-Meunier, Christine Barnerias,[...]. J Exp Med 2017
160
10

Persistent LCMV infection is controlled by blockade of type I interferon signaling.
John R Teijaro, Cherie Ng, Andrew M Lee, Brian M Sullivan, Kathleen C F Sheehan, Megan Welch, Robert D Schreiber, Juan Carlos de la Torre, Michael B A Oldstone. Science 2013
490
10

Persistent HIV-1 replication maintains the tissue reservoir during therapy.
Ramon Lorenzo-Redondo, Helen R Fryer, Trevor Bedford, Eun-Young Kim, John Archer, Sergei L Kosakovsky Pond, Yoon-Seok Chung, Sudhir Penugonda, Jeffrey Chipman, Courtney V Fletcher,[...]. Nature 2016
397
10

Blockade of interferon Beta, but not interferon alpha, signaling controls persistent viral infection.
Cherie T Ng, Brian M Sullivan, John R Teijaro, Andrew M Lee, Megan Welch, Stephanie Rice, Kathleen C F Sheehan, Robert D Schreiber, Michael B A Oldstone. Cell Host Microbe 2015
105
10

CD4+ T-cell deficiency in HIV patients responding to antiretroviral therapy is associated with increased expression of interferon-stimulated genes in CD4+ T cells.
Sonia Fernandez, Sara Tanaskovic, Karla Helbig, Reena Rajasuriar, Marit Kramski, John M Murray, Michael Beard, Damian Purcell, Sharon R Lewin, Patricia Price,[...]. J Infect Dis 2011
82
10

Blockade of chronic type I interferon signaling to control persistent LCMV infection.
Elizabeth B Wilson, Douglas H Yamada, Heidi Elsaesser, Jonathan Herskovitz, Jane Deng, Genhong Cheng, Bruce J Aronow, Christopher L Karp, David G Brooks. Science 2013
474
10

Nonpathogenic SIV infection of African green monkeys induces a strong but rapidly controlled type I IFN response.
Béatrice Jacquelin, Véronique Mayau, Brice Targat, Anne-Sophie Liovat, Désirée Kunkel, Gaël Petitjean, Marie-Agnès Dillies, Pierre Roques, Cécile Butor, Guido Silvestri,[...]. J Clin Invest 2009
330
10

Downregulation of robust acute type I interferon responses distinguishes nonpathogenic simian immunodeficiency virus (SIV) infection of natural hosts from pathogenic SIV infection of rhesus macaques.
Levelle D Harris, Brian Tabb, Donald L Sodora, Mirko Paiardini, Nichole R Klatt, Daniel C Douek, Guido Silvestri, Michaela Müller-Trutwin, Ivona Vasile-Pandrea, Cristian Apetrei,[...]. J Virol 2010
138
10

Phenotypic properties of transmitted founder HIV-1.
Nicholas F Parrish, Feng Gao, Hui Li, Elena E Giorgi, Hannah J Barbian, Erica H Parrish, Lara Zajic, Shilpa S Iyer, Julie M Decker, Amit Kumar,[...]. Proc Natl Acad Sci U S A 2013
279
10

The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys.
Matthew Stremlau, Christopher M Owens, Michel J Perron, Michael Kiessling, Patrick Autissier, Joseph Sodroski. Nature 2004
10

Identification of Interferon-Stimulated Genes with Antiretroviral Activity.
Melissa Kane, Trinity M Zang, Suzannah J Rihn, Fengwen Zhang, Tonya Kueck, Mudathir Alim, John Schoggins, Charles M Rice, Sam J Wilson, Paul D Bieniasz. Cell Host Microbe 2016
104
10

Resistance of Transmitted Founder HIV-1 to IFITM-Mediated Restriction.
Toshana L Foster, Harry Wilson, Shilpa S Iyer, Karen Coss, Katie Doores, Sarah Smith, Paul Kellam, Andrés Finzi, Persephone Borrow, Beatrice H Hahn,[...]. Cell Host Microbe 2016
103
10

IFI16 senses DNA forms of the lentiviral replication cycle and controls HIV-1 replication.
Martin R Jakobsen, Rasmus O Bak, Annika Andersen, Randi K Berg, Søren B Jensen, Jin Tengchuan, Anders Laustsen, Kathrine Hansen, Lars Ostergaard, Katherine A Fitzgerald,[...]. Proc Natl Acad Sci U S A 2013
210
10

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
10

Pattern recognition receptors and inflammation.
Osamu Takeuchi, Shizuo Akira. Cell 2010
10

Human MX2 is an interferon-induced post-entry inhibitor of HIV-1 infection.
Caroline Goujon, Olivier Moncorgé, Hélène Bauby, Tomas Doyle, Christopher C Ward, Torsten Schaller, Stéphane Hué, Wendy S Barclay, Reiner Schulz, Michael H Malim. Nature 2013
370
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.