A citation-based method for searching scientific literature

Lina Zelinger, Anand Swaroop. Trends Genet 2018
Times Cited: 14







List of co-cited articles
118 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity




Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina.
Anand Swaroop, Douglas Kim, Douglas Forrest. Nat Rev Neurosci 2010
329
42

NRL-Regulated Transcriptome Dynamics of Developing Rod Photoreceptors.
Jung-Woong Kim, Hyun-Jin Yang, Matthew John Brooks, Lina Zelinger, Gökhan Karakülah, Norimoto Gotoh, Alexis Boleda, Linn Gieser, Felipe Giuste, Dustin Thad Whitaker,[...]. Cell Rep 2016
59
35

The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis.
Issam Aldiri, Beisi Xu, Lu Wang, Xiang Chen, Daniel Hiler, Lyra Griffiths, Marc Valentine, Abbas Shirinifard, Suresh Thiagarajan, Andras Sablauer,[...]. Neuron 2017
106
35

An atlas of gene expression and gene co-regulation in the human retina.
Michele Pinelli, Annamaria Carissimo, Luisa Cutillo, Ching-Hung Lai, Margherita Mutarelli, Maria Nicoletta Moretti, Marwah Veer Singh, Marianthi Karali, Diego Carrella, Mariateresa Pizzo,[...]. Nucleic Acids Res 2016
36
35

Transition of differential histone H3 methylation in photoreceptors and other retinal cells during retinal differentiation.
Kazuko Ueno, Toshiro Iwagawa, Hiroshi Kuribayashi, Yukihiro Baba, Hiromitsu Nakauchi, Akira Murakami, Masao Nagasaki, Yutaka Suzuki, Sumiko Watanabe. Sci Rep 2016
21
28

Photoreceptor cell fate specification in vertebrates.
Joseph A Brzezinski, Thomas A Reh. Development 2015
79
28

Molecular Anatomy of the Developing Human Retina.
Akina Hoshino, Rinki Ratnapriya, Matthew J Brooks, Vijender Chaitankar, Matthew S Wilken, Chi Zhang, Margaret R Starostik, Linn Gieser, Anna La Torre, Mario Nishio,[...]. Dev Cell 2017
98
28

Gene networks: dissecting pathways in retinal development and disease.
Cheryl Y Gregory-Evans, Valerie A Wallace, Kevin Gregory-Evans. Prog Retin Eye Res 2013
39
28

Histone demethylase Jmjd3 is required for the development of subsets of retinal bipolar cells.
Atsumi Iida, Toshiro Iwagawa, Hiroshi Kuribayashi, Shinya Satoh, Yujin Mochizuki, Yukihiro Baba, Hiromitsu Nakauchi, Takahisa Furukawa, Haruhiko Koseki, Akira Murakami,[...]. Proc Natl Acad Sci U S A 2014
32
28

Comprehensive analysis of gene expression in human retina and supporting tissues.
Mingyao Li, Cheng Jia, Krista L Kazmierkiewicz, Anita S Bowman, Lifeng Tian, Yichuan Liu, Neel A Gupta, Harini V Gudiseva, Stephanie S Yee, Mijin Kim,[...]. Hum Mol Genet 2014
82
28

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina.
Yi-Rong Peng, Karthik Shekhar, Wenjun Yan, Dustin Herrmann, Anna Sappington, Gregory S Bryman, Tavé van Zyl, Michael Tri H Do, Aviv Regev, Joshua R Sanes. Cell 2019
137
28

Epigenetic control of gene regulation during development and disease: A view from the retina.
Ximena Corso-Díaz, Catherine Jaeger, Vijender Chaitankar, Anand Swaroop. Prog Retin Eye Res 2018
47
28

Transcriptome Dynamics of Developing Photoreceptors in Three-Dimensional Retina Cultures Recapitulates Temporal Sequence of Human Cone and Rod Differentiation Revealing Cell Surface Markers and Gene Networks.
Rossukon Kaewkhaw, Koray Dogan Kaya, Matthew Brooks, Kohei Homma, Jizhong Zou, Vijender Chaitankar, Mahendra Rao, Anand Swaroop. Stem Cells 2015
93
21

Cell Type-Specific Epigenomic Analysis Reveals a Uniquely Closed Chromatin Architecture in Mouse Rod Photoreceptors.
Andrew E O Hughes, Jennifer M Enright, Connie A Myers, Susan Q Shen, Joseph C Corbo. Sci Rep 2017
43
21

Transcriptional regulation of rod photoreceptor homeostasis revealed by in vivo NRL targetome analysis.
Hong Hao, Douglas S Kim, Bernward Klocke, Kory R Johnson, Kairong Cui, Norimoto Gotoh, Chongzhi Zang, Janina Gregorski, Linn Gieser, Weiqun Peng,[...]. PLoS Genet 2012
73
21

Roles of histone H3K27 trimethylase Ezh2 in retinal proliferation and differentiation.
Atsumi Iida, Toshiro Iwagawa, Yukihiro Baba, Shinya Satoh, Yujin Mochizuki, Hiromitsu Nakauchi, Takahisa Furukawa, Haruhiko Koseki, Akira Murakami, Sumiko Watanabe. Dev Neurobiol 2015
33
21


Epigenomic landscapes of retinal rods and cones.
Alisa Mo, Chongyuan Luo, Fred P Davis, Eran A Mukamel, Gilbert L Henry, Joseph R Nery, Mark A Urich, Serge Picard, Ryan Lister, Sean R Eddy,[...]. Elife 2016
73
21

The Polycomb complex PRC2 and its mark in life.
Raphaël Margueron, Danny Reinberg. Nature 2011
21

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
21

A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.
Lars G Fritsche, Wilmar Igl, Jessica N Cooke Bailey, Felix Grassmann, Sebanti Sengupta, Jennifer L Bragg-Gresham, Kathryn P Burdon, Scott J Hebbring, Cindy Wen, Mathias Gorski,[...]. Nat Genet 2016
634
21

Analysis of DNA methylation reveals a partial reprogramming of the Müller glia genome during retina regeneration.
Curtis Powell, Ana R Grant, Eli Cornblath, Daniel Goldman. Proc Natl Acad Sci U S A 2013
74
21

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
21

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
491
21

Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification.
Brian S Clark, Genevieve L Stein-O'Brien, Fion Shiau, Gabrielle H Cannon, Emily Davis-Marcisak, Thomas Sherman, Clayton P Santiago, Thanh V Hoang, Fatemeh Rajaii, Rebecca E James-Esposito,[...]. Neuron 2019
114
21

A single-cell transcriptome atlas of the adult human retina.
Samuel W Lukowski, Camden Y Lo, Alexei A Sharov, Quan Nguyen, Lyujie Fang, Sandy Sc Hung, Ling Zhu, Ting Zhang, Ulrike Grünert, Tu Nguyen,[...]. EMBO J 2019
68
21

The Musashi 1 Controls the Splicing of Photoreceptor-Specific Exons in the Vertebrate Retina.
Daniel Murphy, Benjamin Cieply, Russ Carstens, Visvanathan Ramamurthy, Peter Stoilov. PLoS Genet 2016
35
21

An integrated transcriptional analysis of the developing human retina.
Carla B Mellough, Roman Bauer, Joseph Collin, Birthe Dorgau, Darin Zerti, David W P Dolan, Carl M Jones, Osagie G Izuogu, Min Yu, Dean Hallam,[...]. Development 2019
33
21

Functional architecture of the retina: development and disease.
Mrinalini Hoon, Haruhisa Okawa, Luca Della Santina, Rachel O L Wong. Prog Retin Eye Res 2014
197
21


Retinal transcriptome and eQTL analyses identify genes associated with age-related macular degeneration.
Rinki Ratnapriya, Olukayode A Sosina, Margaret R Starostik, Madeline Kwicklis, Rebecca J Kapphahn, Lars G Fritsche, Ashley Walton, Marios Arvanitis, Linn Gieser, Alexandra Pietraszkiewicz,[...]. Nat Genet 2019
75
21

Age-related macular degeneration: genetics and biology coming together.
Lars G Fritsche, Robert N Fariss, Dwight Stambolian, Gonçalo R Abecasis, Christine A Curcio, Anand Swaroop. Annu Rev Genomics Hum Genet 2014
268
14

Linking disease associations with regulatory information in the human genome.
Marc A Schaub, Alan P Boyle, Anshul Kundaje, Serafim Batzoglou, Michael Snyder. Genome Res 2012
478
14


Quantification of Retinogenesis in 3D Cultures Reveals Epigenetic Memory and Higher Efficiency in iPSCs Derived from Rod Photoreceptors.
Daniel Hiler, Xiang Chen, Jennifer Hazen, Sergey Kupriyanov, Patrick A Carroll, Chunxu Qu, Beisi Xu, Dianna Johnson, Lyra Griffiths, Sharon Frase,[...]. Cell Stem Cell 2015
62
14

Loss of Bmi1 causes anomalies in retinal development and degeneration of cone photoreceptors.
Andrea Barabino, Vicky Plamondon, Mohamed Abdouh, Wassim Chatoo, Anthony Flamier, Roy Hanna, Shufeng Zhou, Noboru Motoyama, Marc Hébert, Joëlle Lavoie,[...]. Development 2016
16
14

Transcriptional code and disease map for adult retinal cell types.
Sandra Siegert, Erik Cabuy, Brigitte Gross Scherf, Hubertus Kohler, Satchidananda Panda, Yun-Zheng Le, Hans Jörg Fehling, Dimos Gaidatzis, Michael B Stadler, Botond Roska. Nat Neurosci 2012
178
14

Ezh2 maintains retinal progenitor proliferation, transcriptional integrity, and the timing of late differentiation.
Jianmin Zhang, Russell J Taylor, Anna La Torre, Matthew S Wilken, Kristen E Cox, Thomas A Reh, Monica L Vetter. Dev Biol 2015
35
14

Nrl is required for rod photoreceptor development.
A J Mears, M Kondo, P K Swain, Y Takada, R A Bush, T L Saunders, P A Sieving, A Swaroop. Nat Genet 2001
660
14

Dnmt1, Dnmt3a and Dnmt3b cooperate in photoreceptor and outer plexiform layer development in the mammalian retina.
Ratnesh K Singh, Ramya K Mallela, Abigail Hayes, Nicholas R Dunham, Morgan E Hedden, Raymond A Enke, Robert N Fariss, Hal Sternberg, Michael D West, Igor O Nasonkin. Exp Eye Res 2017
21
14

Polycomb repressive complex PRC2 regulates Xenopus retina development downstream of Wnt/β-catenin signaling.
Issam Aldiri, Kathryn B Moore, David A Hutcheson, Jianmin Zhang, Monica L Vetter. Development 2013
27
14

Effects of aging and anatomic location on gene expression in human retina.
Hui Cai, Mark A Fields, Risa Hoshino, Lucian V Del Priore. Front Aging Neurosci 2012
24
14

Single-cell chromatin accessibility reveals principles of regulatory variation.
Jason D Buenrostro, Beijing Wu, Ulrike M Litzenburger, Dave Ruff, Michael L Gonzales, Michael P Snyder, Howard Y Chang, William J Greenleaf. Nature 2015
817
14

Molecular mechanisms and potential functions of histone demethylases.
Susanne Marije Kooistra, Kristian Helin. Nat Rev Mol Cell Biol 2012
533
14

Histone Deacetylase 1 Is Essential for Rod Photoreceptor Differentiation by Regulating Acetylation at Histone H3 Lysine 9 and Histone H4 Lysine 12 in the Mouse Retina.
Renata C Ferreira, Evgenya Y Popova, Jessica James, Marcelo R S Briones, Samuel S Zhang, Colin J Barnstable. J Biol Chem 2017
17
14

DNA-binding factors shape the mouse methylome at distal regulatory regions.
Michael B Stadler, Rabih Murr, Lukas Burger, Robert Ivanek, Florian Lienert, Anne Schöler, Erik van Nimwegen, Christiane Wirbelauer, Edward J Oakeley, Dimos Gaidatzis,[...]. Nature 2011
871
14

Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing.
Darren A Cusanovich, Riza Daza, Andrew Adey, Hannah A Pliner, Lena Christiansen, Kevin L Gunderson, Frank J Steemers, Cole Trapnell, Jay Shendure. Science 2015
486
14



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.