Sneha Vishwanath, Alexandre G de Brevern, Narayanaswamy Srinivasan. PLoS Comput Biol 2018
Times Cited: 22
Times Cited: 22
Times Cited
Times Co-cited
Similarity
The folding and evolution of multidomain proteins.
Jung-Hoon Han, Sarah Batey, Adrian A Nickson, Sarah A Teichmann, Jane Clarke. Nat Rev Mol Cell Biol 2007
Jung-Hoon Han, Sarah Batey, Adrian A Nickson, Sarah A Teichmann, Jane Clarke. Nat Rev Mol Cell Biol 2007
22
Stability of domain structures in multi-domain proteins.
Ramachandra M Bhaskara, Narayanaswamy Srinivasan. Sci Rep 2011
Ramachandra M Bhaskara, Narayanaswamy Srinivasan. Sci Rep 2011
22
Domain combinations in archaeal, eubacterial and eukaryotic proteomes.
G Apic, J Gough, S A Teichmann. J Mol Biol 2001
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The Protein Data Bank.
H M Berman, J Westbrook, Z Feng, G Gilliland, T N Bhat, H Weissig, I N Shindyalov, P E Bourne. Nucleic Acids Res 2000
H M Berman, J Westbrook, Z Feng, G Gilliland, T N Bhat, H Weissig, I N Shindyalov, P E Bourne. Nucleic Acids Res 2000
22
Protein Assembly and Building Blocks: Beyond the Limits of the LEGO Brick Metaphor.
Yaakov Levy. Biochemistry 2017
Yaakov Levy. Biochemistry 2017
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13
SCOPe: Structural Classification of Proteins--extended, integrating SCOP and ASTRAL data and classification of new structures.
Naomi K Fox, Steven E Brenner, John-Marc Chandonia. Nucleic Acids Res 2014
Naomi K Fox, Steven E Brenner, John-Marc Chandonia. Nucleic Acids Res 2014
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Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions.
Diana Ekman, Asa K Björklund, Johannes Frey-Skött, Arne Elofsson. J Mol Biol 2005
Diana Ekman, Asa K Björklund, Johannes Frey-Skött, Arne Elofsson. J Mol Biol 2005
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UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
13
Studying the folding of multidomain proteins.
Sarah Batey, Adrian A Nickson, Jane Clarke. HFSP J 2008
Sarah Batey, Adrian A Nickson, Jane Clarke. HFSP J 2008
13
Fusion protein linkers: property, design and functionality.
Xiaoying Chen, Jennica L Zaro, Wei-Chiang Shen. Adv Drug Deliv Rev 2013
Xiaoying Chen, Jennica L Zaro, Wei-Chiang Shen. Adv Drug Deliv Rev 2013
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Principles for designing ideal protein structures.
Nobuyasu Koga, Rie Tatsumi-Koga, Gaohua Liu, Rong Xiao, Thomas B Acton, Gaetano T Montelione, David Baker. Nature 2012
Nobuyasu Koga, Rie Tatsumi-Koga, Gaohua Liu, Rong Xiao, Thomas B Acton, Gaetano T Montelione, David Baker. Nature 2012
13
TM-align: a protein structure alignment algorithm based on the TM-score.
Yang Zhang, Jeffrey Skolnick. Nucleic Acids Res 2005
Yang Zhang, Jeffrey Skolnick. Nucleic Acids Res 2005
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Structure, function and evolution of multidomain proteins.
Christine Vogel, Matthew Bashton, Nicola D Kerrison, Cyrus Chothia, Sarah A Teichmann. Curr Opin Struct Biol 2004
Christine Vogel, Matthew Bashton, Nicola D Kerrison, Cyrus Chothia, Sarah A Teichmann. Curr Opin Struct Biol 2004
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ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.
J MONOD, J WYMAN, J P CHANGEUX. J Mol Biol 1965
J MONOD, J WYMAN, J P CHANGEUX. J Mol Biol 1965
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Using chemical shift perturbation to characterise ligand binding.
Mike P Williamson. Prog Nucl Magn Reson Spectrosc 2013
Mike P Williamson. Prog Nucl Magn Reson Spectrosc 2013
9
Networks of Dynamic Allostery Regulate Enzyme Function.
Michael Joseph Holliday, Carlo Camilloni, Geoffrey Stuart Armstrong, Michele Vendruscolo, Elan Zohar Eisenmesser. Structure 2017
Michael Joseph Holliday, Carlo Camilloni, Geoffrey Stuart Armstrong, Michele Vendruscolo, Elan Zohar Eisenmesser. Structure 2017
9
9
The Role of Protein Loops and Linkers in Conformational Dynamics and Allostery.
Elena Papaleo, Giorgio Saladino, Matteo Lambrughi, Kresten Lindorff-Larsen, Francesco Luigi Gervasio, Ruth Nussinov. Chem Rev 2016
Elena Papaleo, Giorgio Saladino, Matteo Lambrughi, Kresten Lindorff-Larsen, Francesco Luigi Gervasio, Ruth Nussinov. Chem Rev 2016
9
Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.
P E Wright, H J Dyson. J Mol Biol 1999
P E Wright, H J Dyson. J Mol Biol 1999
9
Evolution of protein domain promiscuity in eukaryotes.
Malay Kumar Basu, Liran Carmel, Igor B Rogozin, Eugene V Koonin. Genome Res 2008
Malay Kumar Basu, Liran Carmel, Igor B Rogozin, Eugene V Koonin. Genome Res 2008
9
How do new proteins arise?
Erich Bornberg-Bauer, Ann-Kathrin Huylmans, Tobias Sikosek. Curr Opin Struct Biol 2010
Erich Bornberg-Bauer, Ann-Kathrin Huylmans, Tobias Sikosek. Curr Opin Struct Biol 2010
9
Dynamic allostery: linkers are not merely flexible.
Buyong Ma, Chung-Jung Tsai, Türkan Haliloğlu, Ruth Nussinov. Structure 2011
Buyong Ma, Chung-Jung Tsai, Türkan Haliloğlu, Ruth Nussinov. Structure 2011
9
The relationship between domain duplication and recombination.
Christine Vogel, Sarah A Teichmann, Jose Pereira-Leal. J Mol Biol 2005
Christine Vogel, Sarah A Teichmann, Jose Pereira-Leal. J Mol Biol 2005
9
SCOP: a structural classification of proteins database for the investigation of sequences and structures.
A G Murzin, S E Brenner, T Hubbard, C Chothia. J Mol Biol 1995
A G Murzin, S E Brenner, T Hubbard, C Chothia. J Mol Biol 1995
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Recognition of sites of functional specialisation in all known eukaryotic protein kinase families.
Raju Kalaivani, Raju Reema, Narayanaswamy Srinivasan. PLoS Comput Biol 2018
Raju Kalaivani, Raju Reema, Narayanaswamy Srinivasan. PLoS Comput Biol 2018
66
CD-HIT: accelerated for clustering the next-generation sequencing data.
Limin Fu, Beifang Niu, Zhengwei Zhu, Sitao Wu, Weizhong Li. Bioinformatics 2012
Limin Fu, Beifang Niu, Zhengwei Zhu, Sitao Wu, Weizhong Li. Bioinformatics 2012
9
Domain insertion permissibility-guided engineering of allostery in ion channels.
Willow Coyote-Maestas, Yungui He, Chad L Myers, Daniel Schmidt. Nat Commun 2019
Willow Coyote-Maestas, Yungui He, Chad L Myers, Daniel Schmidt. Nat Commun 2019
16
Evolution of the human ion channel set.
Timothy J Jegla, Christian M Zmasek, Serge Batalov, Surendra K Nayak. Comb Chem High Throughput Screen 2009
Timothy J Jegla, Christian M Zmasek, Serge Batalov, Surendra K Nayak. Comb Chem High Throughput Screen 2009
9
Global analysis of protein folding using massively parallel design, synthesis, and testing.
Gabriel J Rocklin, Tamuka M Chidyausiku, Inna Goreshnik, Alex Ford, Scott Houliston, Alexander Lemak, Lauren Carter, Rashmi Ravichandran, Vikram K Mulligan, Aaron Chevalier,[...]. Science 2017
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9
Profiling of engineering hotspots identifies an allosteric CRISPR-Cas9 switch.
Benjamin L Oakes, Dana C Nadler, Avi Flamholz, Christof Fellmann, Brett T Staahl, Jennifer A Doudna, David F Savage. Nat Biotechnol 2016
Benjamin L Oakes, Dana C Nadler, Avi Flamholz, Christof Fellmann, Brett T Staahl, Jennifer A Doudna, David F Savage. Nat Biotechnol 2016
9
Inwardly rectifying potassium channels: their structure, function, and physiological roles.
Hiroshi Hibino, Atsushi Inanobe, Kazuharu Furutani, Shingo Murakami, Ian Findlay, Yoshihisa Kurachi. Physiol Rev 2010
Hiroshi Hibino, Atsushi Inanobe, Kazuharu Furutani, Shingo Murakami, Ian Findlay, Yoshihisa Kurachi. Physiol Rev 2010
9
Circular permutation profiling by deep sequencing libraries created using transposon mutagenesis.
Joshua T Atkinson, Alicia M Jones, Quan Zhou, Jonathan J Silberg. Nucleic Acids Res 2018
Joshua T Atkinson, Alicia M Jones, Quan Zhou, Jonathan J Silberg. Nucleic Acids Res 2018
18
Determining protein structures using deep mutagenesis.
Jörn M Schmiedel, Ben Lehner. Nat Genet 2019
Jörn M Schmiedel, Ben Lehner. Nat Genet 2019
9
Golgi export of the Kir2.1 channel is driven by a trafficking signal located within its tertiary structure.
Donghui Ma, Tarvinder Kaur Taneja, Brian M Hagen, Bo-Young Kim, Bernardo Ortega, W Jonathan Lederer, Paul A Welling. Cell 2011
Donghui Ma, Tarvinder Kaur Taneja, Brian M Hagen, Bo-Young Kim, Bernardo Ortega, W Jonathan Lederer, Paul A Welling. Cell 2011
9
Deep mutational scanning: a new style of protein science.
Douglas M Fowler, Stanley Fields. Nat Methods 2014
Douglas M Fowler, Stanley Fields. Nat Methods 2014
9
Design of protein switches based on an ensemble model of allostery.
Jay H Choi, Abigail H Laurent, Vincent J Hilser, Marc Ostermeier. Nat Commun 2015
Jay H Choi, Abigail H Laurent, Vincent J Hilser, Marc Ostermeier. Nat Commun 2015
9
Multiplex assessment of protein variant abundance by massively parallel sequencing.
Kenneth A Matreyek, Lea M Starita, Jason J Stephany, Beth Martin, Melissa A Chiasson, Vanessa E Gray, Martin Kircher, Arineh Khechaduri, Jennifer N Dines, Ronald J Hause,[...]. Nat Genet 2018
Kenneth A Matreyek, Lea M Starita, Jason J Stephany, Beth Martin, Melissa A Chiasson, Vanessa E Gray, Martin Kircher, Arineh Khechaduri, Jennifer N Dines, Ronald J Hause,[...]. Nat Genet 2018
9
The Kir channel immunoglobulin domain is essential for Kir1.1 (ROMK) thermodynamic stability, trafficking and gating.
Katherine Fallen, Sreedatta Banerjee, Jonathan Sheehan, Daniel Addison, L Michelle Lewis, Jens Meiler, Jerod S Denton. Channels (Austin) 2009
Katherine Fallen, Sreedatta Banerjee, Jonathan Sheehan, Daniel Addison, L Michelle Lewis, Jens Meiler, Jerod S Denton. Channels (Austin) 2009
10
Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat Neurosci 2016
Michael Z Lin, Mark J Schnitzer. Nat Neurosci 2016
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Engineering extrinsic disorder to control protein activity in living cells.
Onur Dagliyan, Miroslaw Tarnawski, Pei-Hsuan Chu, David Shirvanyants, Ilme Schlichting, Nikolay V Dokholyan, Klaus M Hahn. Science 2016
Onur Dagliyan, Miroslaw Tarnawski, Pei-Hsuan Chu, David Shirvanyants, Ilme Schlichting, Nikolay V Dokholyan, Klaus M Hahn. Science 2016
9
Surface sites for engineering allosteric control in proteins.
Jeeyeon Lee, Madhusudan Natarajan, Vishal C Nashine, Michael Socolich, Tina Vo, William P Russ, Stephen J Benkovic, Rama Ranganathan. Science 2008
Jeeyeon Lee, Madhusudan Natarajan, Vishal C Nashine, Michael Socolich, Tina Vo, William P Russ, Stephen J Benkovic, Rama Ranganathan. Science 2008
9
Structural basis of PIP2 activation of the classical inward rectifier K+ channel Kir2.2.
Scott B Hansen, Xiao Tao, Roderick MacKinnon. Nature 2011
Scott B Hansen, Xiao Tao, Roderick MacKinnon. Nature 2011
9
The language of the protein universe.
Andrea Scaiewicz, Michael Levitt. Curr Opin Genet Dev 2015
Andrea Scaiewicz, Michael Levitt. Curr Opin Genet Dev 2015
11
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.