A citation-based method for searching scientific literature

Keiko Kondo, Tsukasa Mashima, Takanori Oyoshi, Ryota Yagi, Riki Kurokawa, Naohiro Kobayashi, Takashi Nagata, Masato Katahira. Sci Rep 2018
Times Cited: 15







List of co-cited articles
148 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Defining the RGG/RG motif.
Palaniraja Thandapani, Timothy R O'Connor, Timothy L Bailey, Stéphane Richard. Mol Cell 2013
289
60

Regulation of telomere length by G-quadruplex telomere DNA- and TERRA-binding protein TLS/FUS.
Kentaro Takahama, Asami Takada, Shota Tada, Mai Shimizu, Kazutoshi Sayama, Riki Kurokawa, Takanori Oyoshi. Chem Biol 2013
89
53


Intrinsically disordered RGG/RG domains mediate degenerate specificity in RNA binding.
Bagdeser A Ozdilek, Valery F Thompson, Nasiha S Ahmed, Connor I White, Robert T Batey, Jacob C Schwartz. Nucleic Acids Res 2017
75
46

Crystal structure reveals specific recognition of a G-quadruplex RNA by a β-turn in the RGG motif of FMRP.
Nikita Vasilyev, Anna Polonskaia, Jennifer C Darnell, Robert B Darnell, Dinshaw J Patel, Alexander Serganov. Proc Natl Acad Sci U S A 2015
91
46

Identification of Ewing's sarcoma protein as a G-quadruplex DNA- and RNA-binding protein.
Kentaro Takahama, Katsuhito Kino, Shigeki Arai, Riki Kurokawa, Takanori Oyoshi. FEBS J 2011
43
46

Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction.
Anh Tuân Phan, Vitaly Kuryavyi, Jennifer C Darnell, Alexander Serganov, Ananya Majumdar, Serge Ilin, Tanya Raslin, Anna Polonskaia, Cynthia Chen, David Clain,[...]. Nat Struct Mol Biol 2011
138
40

G-Quadruplex DNA- and RNA-Specific-Binding Proteins Engineered from the RGG Domain of TLS/FUS.
Kentaro Takahama, Arisa Miyawaki, Takumi Shitara, Keita Mitsuya, Masayuki Morikawa, Masaki Hagihara, Katsuhito Kino, Ayumu Yamamoto, Takanori Oyoshi. ACS Chem Biol 2015
26
40



Loop lengths of G-quadruplex structures affect the G-quadruplex DNA binding selectivity of the RGG motif in Ewing's sarcoma.
Kentaro Takahama, Chieri Sugimoto, Shigeki Arai, Riki Kurokawa, Takanori Oyoshi. Biochemistry 2011
23
26

Crystal structure of the two-RRM domain of hnRNP A1 (UP1) complexed with single-stranded telomeric DNA.
J Ding, M K Hayashi, Y Zhang, L Manche, A R Krainer, R M Xu. Genes Dev 1999
266
26

Unfolding of quadruplex structure in the G-rich strand of the minisatellite repeat by the binding protein UP1.
Hirokazu Fukuda, Masato Katahira, Naoto Tsuchiya, Yoshiaki Enokizono, Takashi Sugimura, Minako Nagao, Hitoshi Nakagama. Proc Natl Acad Sci U S A 2002
82
26

DNA and RNA quadruplex-binding proteins.
Václav Brázda, Lucia Hároníková, Jack C C Liao, Miroslav Fojta. Int J Mol Sci 2014
140
26

TERRA and hnRNPA1 orchestrate an RPA-to-POT1 switch on telomeric single-stranded DNA.
Rachel Litman Flynn, Richard C Centore, Roderick J O'Sullivan, Rekha Rai, Alice Tse, Zhou Songyang, Sandy Chang, Jan Karlseder, Lee Zou. Nature 2011
221
26

TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres.
Zhong Deng, Julie Norseen, Andreas Wiedmer, Harold Riethman, Paul M Lieberman. Mol Cell 2009
345
26

RGG/RG Motif Regions in RNA Binding and Phase Separation.
P Andrew Chong, Robert M Vernon, Julie D Forman-Kay. J Mol Biol 2018
110
26

The Solution Structure of FUS Bound to RNA Reveals a Bipartite Mode of RNA Recognition with Both Sequence and Shape Specificity.
Fionna E Loughlin, Peter J Lukavsky, Tamara Kazeeva, Stefan Reber, Eva-Maria Hock, Martino Colombo, Christine Von Schroetter, Phillip Pauli, Antoine Cléry, Oliver Mühlemann,[...]. Mol Cell 2019
44
26


Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription.
Xiangting Wang, Shigeki Arai, Xiaoyuan Song, Donna Reichart, Kun Du, Gabriel Pascual, Paul Tempst, Michael G Rosenfeld, Christopher K Glass, Riki Kurokawa. Nature 2008
708
20


Arginine methylation next to the PY-NLS modulates Transportin binding and nuclear import of FUS.
Dorothee Dormann, Tobias Madl, Chiara F Valori, Eva Bentmann, Sabina Tahirovic, Claudia Abou-Ajram, Elisabeth Kremmer, Olaf Ansorge, Ian R A Mackenzie, Manuela Neumann,[...]. EMBO J 2012
182
20

FUS Phase Separation Is Modulated by a Molecular Chaperone and Methylation of Arginine Cation-π Interactions.
Seema Qamar, GuoZhen Wang, Suzanne J Randle, Francesco Simone Ruggeri, Juan A Varela, Julie Qiaojin Lin, Emma C Phillips, Akinori Miyashita, Declan Williams, Florian Ströhl,[...]. Cell 2018
276
20

Nuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple Sites.
Takuya Yoshizawa, Rustam Ali, Jenny Jiou, Ho Yee Joyce Fung, Kathleen A Burke, Seung Joong Kim, Yuan Lin, William B Peeples, Daniel Saltzberg, Michael Soniat,[...]. Cell 2018
121
20

Structure-Dependent Binding of hnRNPA1 to Telomere RNA.
Xiao Liu, Takumi Ishizuka, Hong-Liang Bao, Kei Wada, Yuma Takeda, Keisuke Iida, Kazuo Nagasawa, Danzhou Yang, Yan Xu. J Am Chem Soc 2017
25
20

G-quadruplex binding ability of TLS/FUS depends on the β-spiral structure of the RGG domain.
Ryota Yagi, Takatsugu Miyazaki, Takanori Oyoshi. Nucleic Acids Res 2018
16
20

Telomere elongation by hnRNP A1 and a derivative that interacts with telomeric repeats and telomerase.
H LaBranche, S Dupuis, Y Ben-David, M R Bani, R J Wellinger, B Chabot. Nat Genet 1998
235
20

NMR spectroscopy of G-quadruplexes.
Michael Adrian, Brahim Heddi, Anh Tuân Phan. Methods 2012
146
20

Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators.
Marion Scheibe, Nausica Arnoult, Dennis Kappei, Frank Buchholz, Anabelle Decottignies, Falk Butter, Matthias Mann. Genome Res 2013
47
20


Suv4-20h deficiency results in telomere elongation and derepression of telomere recombination.
Roberta Benetti, Susana Gonzalo, Isabel Jaco, Gunnar Schotta, Peter Klatt, Thomas Jenuwein, María A Blasco. J Cell Biol 2007
186
20

Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends.
Claus M Azzalin, Patrick Reichenbach, Lela Khoriauli, Elena Giulotto, Joachim Lingner. Science 2007
809
20

TERRA-reinforced association of LSD1 with MRE11 promotes processing of uncapped telomeres.
Antonio Porro, Sascha Feuerhahn, Joachim Lingner. Cell Rep 2014
76
20

Targeting of Polycomb Repressive Complex 2 to RNA by Short Repeats of Consecutive Guanines.
Xueyin Wang, Karen J Goodrich, Anne R Gooding, Haroon Naeem, Stuart Archer, Richard D Paucek, Daniel T Youmans, Thomas R Cech, Chen Davidovich. Mol Cell 2017
94
20

G-quadruplex RNA binding and recognition by the lysine-specific histone demethylase-1 enzyme.
Alexander Hirschi, William J Martin, Zigmund Luka, Lioudmila V Loukachevitch, Nicholas J Reiter. RNA 2016
21
20

TERRA recruitment of polycomb to telomeres is essential for histone trymethylation marks at telomeric heterochromatin.
Juan J Montero, Isabel López-Silanes, Diego Megías, Mario F Fraga, Álvaro Castells-García, Maria A Blasco. Nat Commun 2018
52
20

A three-state model for the regulation of telomerase by TERRA and hnRNPA1.
Sophie Redon, Ivo Zemp, Joachim Lingner. Nucleic Acids Res 2013
58
20

Protein hnRNP A1 and its derivative Up1 unfold quadruplex DNA in the human KRAS promoter: implications for transcription.
Manikandan Paramasivam, Alexandro Membrino, Susanna Cogoi, Hirokazu Fukuda, Hitoshi Nakagama, Luigi E Xodo. Nucleic Acids Res 2009
99
20

Identification of G-Quadruplex-Binding Protein from the Exploration of RGG Motif/G-Quadruplex Interactions.
Zhou-Li Huang, Jing Dai, Wen-Hua Luo, Xiang-Gui Wang, Jia-Heng Tan, Shuo-Bin Chen, Zhi-Shu Huang. J Am Chem Soc 2018
23
20

RNA G-Quadruplexes in Biology: Principles and Molecular Mechanisms.
Marta M Fay, Shawn M Lyons, Pavel Ivanov. J Mol Biol 2017
159
20

G-quadruplexes and helicases.
Oscar Mendoza, Anne Bourdoncle, Jean-Baptiste Boulé, Robert M Brosh, Jean-Louis Mergny. Nucleic Acids Res 2016
204
20



Nucleic acid-binding specificity of human FUS protein.
Xueyin Wang, Jacob C Schwartz, Thomas R Cech. Nucleic Acids Res 2015
62
13

Arginine methylation by PRMT1 regulates nuclear-cytoplasmic localization and toxicity of FUS/TLS harbouring ALS-linked mutations.
Miranda L Tradewell, Zhenbao Yu, Michael Tibshirani, Marie-Chloé Boulanger, Heather D Durham, Stéphane Richard. Hum Mol Genet 2012
137
13

Arginine Methylation: The Coming of Age.
Roméo S Blanc, Stéphane Richard. Mol Cell 2017
317
13

RNA seeds higher-order assembly of FUS protein.
Jacob C Schwartz, Xueyin Wang, Elaine R Podell, Thomas R Cech. Cell Rep 2013
177
13

RNA targets of wild-type and mutant FET family proteins.
Jessica I Hoell, Erik Larsson, Simon Runge, Jeffrey D Nusbaum, Sujitha Duggimpudi, Thalia A Farazi, Markus Hafner, Arndt Borkhardt, Chris Sander, Thomas Tuschl. Nat Struct Mol Biol 2011
218
13

Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains.
Dylan T Murray, Masato Kato, Yi Lin, Kent R Thurber, Ivan Hung, Steven L McKnight, Robert Tycko. Cell 2017
261
13

Phase transition of a disordered nuage protein generates environmentally responsive membraneless organelles.
Timothy J Nott, Evangelia Petsalaki, Patrick Farber, Dylan Jervis, Eden Fussner, Anne Plochowietz, Timothy D Craggs, David P Bazett-Jones, Tony Pawson, Julie D Forman-Kay,[...]. Mol Cell 2015
670
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.