A citation-based method for searching scientific literature

Ryan S Wible, Chidambaram Ramanathan, Carrie Hayes Sutter, Kristin M Olesen, Thomas W Kensler, Andrew C Liu, Thomas R Sutter. Elife 2018
Times Cited: 55







List of co-cited articles
714 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The circadian clock regulates rhythmic activation of the NRF2/glutathione-mediated antioxidant defense pathway to modulate pulmonary fibrosis.
Vanja Pekovic-Vaughan, Julie Gibbs, Hikari Yoshitane, Nan Yang, Dharshika Pathiranage, Baoqiang Guo, Aya Sagami, Keiko Taguchi, David Bechtold, Andrew Loudon,[...]. Genes Dev 2014
170
41

Circadian clock protein BMAL1 regulates IL-1β in macrophages via NRF2.
James O Early, Deepthi Menon, Cathy A Wyse, Mariana P Cervantes-Silva, Zbigniew Zaslona, Richard G Carroll, Eva M Palsson-McDermott, Stefano Angiari, Dylan G Ryan, Sarah E Corcoran,[...]. Proc Natl Acad Sci U S A 2018
131
32

The Pentose Phosphate Pathway Regulates the Circadian Clock.
Guillaume Rey, Utham K Valekunja, Kevin A Feeney, Lisa Wulund, Nikolay B Milev, Alessandra Stangherlin, Laura Ansel-Bollepalli, Vidya Velagapudi, John S O'Neill, Akhilesh B Reddy. Cell Metab 2016
87
30

A circadian gene expression atlas in mammals: implications for biology and medicine.
Ray Zhang, Nicholas F Lahens, Heather I Ballance, Michael E Hughes, John B Hogenesch. Proc Natl Acad Sci U S A 2014
29

Circadian control of the NAD+ salvage pathway by CLOCK-SIRT1.
Yasukazu Nakahata, Saurabh Sahar, Giuseppe Astarita, Milota Kaluzova, Paolo Sassone-Corsi. Science 2009
825
29

Circadian clock feedback cycle through NAMPT-mediated NAD+ biosynthesis.
Kathryn Moynihan Ramsey, Jun Yoshino, Cynthia S Brace, Dana Abrassart, Yumiko Kobayashi, Biliana Marcheva, Hee-Kyung Hong, Jason L Chong, Ethan D Buhr, Choogon Lee,[...]. Science 2009
767
27


Circadian clocks in human red blood cells.
John S O'Neill, Akhilesh B Reddy. Nature 2011
525
25

Regulation of clock and NPAS2 DNA binding by the redox state of NAD cofactors.
J Rutter, M Reick, L C Wu, S L McKnight. Science 2001
695
23

Early aging and age-related pathologies in mice deficient in BMAL1, the core componentof the circadian clock.
Roman V Kondratov, Anna A Kondratova, Victoria Y Gorbacheva, Olena V Vykhovanets, Marina P Antoch. Genes Dev 2006
742
23

SIRT1 regulates circadian clock gene expression through PER2 deacetylation.
Gad Asher, David Gatfield, Markus Stratmann, Hans Reinke, Charna Dibner, Florian Kreppel, Raul Mostoslavsky, Frederick W Alt, Ueli Schibler. Cell 2008
925
21

AMPK regulates the circadian clock by cryptochrome phosphorylation and degradation.
Katja A Lamia, Uma M Sachdeva, Luciano DiTacchio, Elliot C Williams, Jacqueline G Alvarez, Daniel F Egan, Debbie S Vasquez, Henry Juguilon, Satchidananda Panda, Reuben J Shaw,[...]. Science 2009
596
21

The NAD+-dependent deacetylase SIRT1 modulates CLOCK-mediated chromatin remodeling and circadian control.
Yasukazu Nakahata, Milota Kaluzova, Benedetto Grimaldi, Saurabh Sahar, Jun Hirayama, Danica Chen, Leonard P Guarente, Paolo Sassone-Corsi. Cell 2008
962
20

Central and peripheral circadian clocks in mammals.
Jennifer A Mohawk, Carla B Green, Joseph S Takahashi. Annu Rev Neurosci 2012
18

ROS stress resets circadian clocks to coordinate pro-survival signals.
Teruya Tamaru, Mitsuru Hattori, Yasuharu Ninomiya, Genki Kawamura, Guillaume Varès, Kousuke Honda, Durga Prasad Mishra, Bing Wang, Ivor Benjamin, Paolo Sassone-Corsi,[...]. PLoS One 2013
69
18

Peroxiredoxins are conserved markers of circadian rhythms.
Rachel S Edgar, Edward W Green, Yuwei Zhao, Gerben van Ooijen, Maria Olmedo, Ximing Qin, Yao Xu, Min Pan, Utham K Valekunja, Kevin A Feeney,[...]. Nature 2012
542
18

Diurnal variation of hepatic antioxidant gene expression in mice.
Yi-Qiao Xu, Dan Zhang, Tao Jin, Ding-Jun Cai, Qin Wu, Yuanfu Lu, Jie Liu, Curtis D Klaassen. PLoS One 2012
95
18

Diurnal oscillations of endogenous H2O2 sustained by p66Shc regulate circadian clocks.
Jian-Fei Pei, Xun-Kai Li, Wen-Qi Li, Qian Gao, Yang Zhang, Xiao-Man Wang, Jia-Qi Fu, Shen-Shen Cui, Jia-Hua Qu, Xiang Zhao,[...]. Nat Cell Biol 2019
44
22

Circadian clock NAD+ cycle drives mitochondrial oxidative metabolism in mice.
Clara Bien Peek, Alison H Affinati, Kathryn Moynihan Ramsey, Hsin-Yu Kuo, Wei Yu, Laura A Sena, Olga Ilkayeva, Biliana Marcheva, Yumiko Kobayashi, Chiaki Omura,[...]. Science 2013
407
16

The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator.
Nicolas Preitner, Francesca Damiola, Luis Lopez-Molina, Joszef Zakany, Denis Duboule, Urs Albrecht, Ueli Schibler. Cell 2002
16

Intercellular coupling confers robustness against mutations in the SCN circadian clock network.
Andrew C Liu, David K Welsh, Caroline H Ko, Hien G Tran, Eric E Zhang, Aaron A Priest, Ethan D Buhr, Oded Singer, Kirsten Meeker, Inder M Verma,[...]. Cell 2007
505
14

Circadian Clock Interaction with HIF1α Mediates Oxygenic Metabolism and Anaerobic Glycolysis in Skeletal Muscle.
Clara Bien Peek, Daniel C Levine, Jonathan Cedernaes, Akihiko Taguchi, Yumiko Kobayashi, Stacy J Tsai, Nicolle A Bonar, Maureen R McNulty, Kathryn Moynihan Ramsey, Joseph Bass. Cell Metab 2017
181
14

Transcriptional architecture and chromatin landscape of the core circadian clock in mammals.
Nobuya Koike, Seung-Hee Yoo, Hung-Chung Huang, Vivek Kumar, Choogon Lee, Tae-Kyung Kim, Joseph S Takahashi. Science 2012
885
14

Circadian rhythm of redox state regulates excitability in suprachiasmatic nucleus neurons.
Tongfei A Wang, Yanxun V Yu, Gubbi Govindaiah, Xiaoying Ye, Liana Artinian, Todd P Coleman, Jonathan V Sweedler, Charles L Cox, Martha U Gillette. Science 2012
145
14

Coordination of circadian timing in mammals.
Steven M Reppert, David R Weaver. Nature 2002
14

mTOR signaling regulates central and peripheral circadian clock function.
Chidambaram Ramanathan, Nimish D Kathale, Dong Liu, Choogon Lee, David A Freeman, John B Hogenesch, Ruifeng Cao, Andrew C Liu. PLoS Genet 2018
99
14

Oxidative stress and inflammation modulate Rev-erbα signaling in the neonatal lung and affect circadian rhythmicity.
Guang Yang, Clyde J Wright, Maurice D Hinson, Amal P Fernando, Shaon Sengupta, Chhanda Biswas, Ping La, Phyllis A Dennery. Antioxid Redox Signal 2014
47
17

Transcriptional control of antioxidant defense by the circadian clock.
Sonal A Patel, Nikkhil S Velingkaar, Roman V Kondratov. Antioxid Redox Signal 2014
51
15

Core circadian protein CLOCK is a positive regulator of NF-κB-mediated transcription.
Mary L Spengler, Karen K Kuropatwinski, Maria Comas, Alexander V Gasparian, Natalia Fedtsova, Anatoli S Gleiberman, Ilya I Gitlin, Natalia M Artemicheva, Krysta A Deluca, Andrei V Gudkov,[...]. Proc Natl Acad Sci U S A 2012
202
14

Reciprocal Regulation between the Circadian Clock and Hypoxia Signaling at the Genome Level in Mammals.
Yaling Wu, Dingbin Tang, Na Liu, Wei Xiong, Huanwei Huang, Yang Li, Zhixiong Ma, Haijiao Zhao, Peihao Chen, Xiangbing Qi,[...]. Cell Metab 2017
147
12


The Circadian Protein BMAL1 Regulates Translation in Response to S6K1-Mediated Phosphorylation.
Jonathan O Lipton, Elizabeth D Yuan, Lara M Boyle, Darius Ebrahimi-Fakhari, Erica Kwiatkowski, Ashwin Nathan, Thomas Güttler, Fred Davis, John M Asara, Mustafa Sahin. Cell 2015
204
12


Circadian clock proteins regulate neuronal redox homeostasis and neurodegeneration.
Erik S Musiek, Miranda M Lim, Guangrui Yang, Adam Q Bauer, Laura Qi, Yool Lee, Jee Hoon Roh, Xilma Ortiz-Gonzalez, Joshua T Dearborn, Joseph P Culver,[...]. J Clin Invest 2013
281
12

Mop3 is an essential component of the master circadian pacemaker in mammals.
M K Bunger, L D Wilsbacher, S M Moran, C Clendenin, L A Radcliffe, J B Hogenesch, M C Simon, J S Takahashi, C A Bradfield. Cell 2000
12

Disruption of the clock components CLOCK and BMAL1 leads to hypoinsulinaemia and diabetes.
Biliana Marcheva, Kathryn Moynihan Ramsey, Ethan D Buhr, Yumiko Kobayashi, Hong Su, Caroline H Ko, Ganka Ivanova, Chiaki Omura, Shelley Mo, Martha H Vitaterna,[...]. Nature 2010
966
12

Coordinated transcription of key pathways in the mouse by the circadian clock.
Satchidananda Panda, Marina P Antoch, Brooke H Miller, Andrew I Su, Andrew B Schook, Marty Straume, Peter G Schultz, Steve A Kay, Joseph S Takahashi, John B Hogenesch. Cell 2002
12

A functional genomics strategy reveals Rora as a component of the mammalian circadian clock.
Trey K Sato, Satchidananda Panda, Loren J Miraglia, Teresa M Reyes, Radu D Rudic, Peter McNamara, Kinnery A Naik, Garret A FitzGerald, Steve A Kay, John B Hogenesch. Neuron 2004
729
12

Bmal1 and β-cell clock are required for adaptation to circadian disruption, and their loss of function leads to oxidative stress-induced β-cell failure in mice.
Jeongkyung Lee, Mousumi Moulik, Zhe Fang, Pradip Saha, Fang Zou, Yong Xu, David L Nelson, Ke Ma, David D Moore, Vijay K Yechoor. Mol Cell Biol 2013
141
12

Oxidative stress sensor Keap1 functions as an adaptor for Cul3-based E3 ligase to regulate proteasomal degradation of Nrf2.
Akira Kobayashi, Moon-Il Kang, Hiromi Okawa, Makiko Ohtsuji, Yukari Zenke, Tomoki Chiba, Kazuhiko Igarashi, Masayuki Yamamoto. Mol Cell Biol 2004
12

Antioxidant N-acetyl-L-cysteine ameliorates symptoms of premature aging associated with the deficiency of the circadian protein BMAL1.
Roman V Kondratov, Olena Vykhovanets, Anna A Kondratova, Marina P Antoch. Aging (Albany NY) 2009
111
12

BMAL1-dependent regulation of the mTOR signaling pathway delays aging.
Rohini V Khapre, Anna A Kondratova, Sonal Patel, Yuliya Dubrovsky, Michelle Wrobel, Marina P Antoch, Roman V Kondratov. Aging (Albany NY) 2014
133
10


Poly(ADP-ribose) polymerase 1 participates in the phase entrainment of circadian clocks to feeding.
Gad Asher, Hans Reinke, Matthias Altmeyer, Maria Gutierrez-Arcelus, Michael O Hottiger, Ueli Schibler. Cell 2010
256
10

A genome-wide RNAi screen for modifiers of the circadian clock in human cells.
Eric E Zhang, Andrew C Liu, Tsuyoshi Hirota, Loren J Miraglia, Genevieve Welch, Pagkapol Y Pongsawakul, Xianzhong Liu, Ann Atwood, Jon W Huss, Jeff Janes,[...]. Cell 2009
306
10

PERIOD2::LUCIFERASE real-time reporting of circadian dynamics reveals persistent circadian oscillations in mouse peripheral tissues.
Seung-Hee Yoo, Shin Yamazaki, Phillip L Lowrey, Kazuhiro Shimomura, Caroline H Ko, Ethan D Buhr, Sandra M Siepka, Hee-Kyung Hong, Won Jun Oh, Ook Joon Yoo,[...]. Proc Natl Acad Sci U S A 2004
10

Mammalian Circadian Period, But Not Phase and Amplitude, Is Robust Against Redox and Metabolic Perturbations.
Marrit Putker, Priya Crosby, Kevin A Feeney, Nathaniel P Hoyle, Ana S H Costa, Edoardo Gaude, Christian Frezza, John S O'Neill. Antioxid Redox Signal 2018
37
16

Emergence of noise-induced oscillations in the central circadian pacemaker.
Caroline H Ko, Yujiro R Yamada, David K Welsh, Ethan D Buhr, Andrew C Liu, Eric E Zhang, Martin R Ralph, Steve A Kay, Daniel B Forger, Joseph S Takahashi. PLoS Biol 2010
135
10

Control mechanism of the circadian clock for timing of cell division in vivo.
Takuya Matsuo, Shun Yamaguchi, Shigeru Mitsui, Aki Emi, Fukuko Shimoda, Hitoshi Okamura. Science 2003
805
10



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.