A citation-based method for searching scientific literature

Toshio Maekawa, Binbin Liu, Daisuke Nakai, Keisuke Yoshida, Ken-Ichi Nakamura, Mami Yasukawa, Manabu Koike, Kaiyo Takubo, Bruno Chatton, Fuyuki Ishikawa, Kenkichi Masutomi, Shunsuke Ishii. Nucleic Acids Res 2018
Times Cited: 13







List of co-cited articles
45 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The transcription factor ATF7 mediates lipopolysaccharide-induced epigenetic changes in macrophages involved in innate immunological memory.
Keisuke Yoshida, Toshio Maekawa, Yujuan Zhu, Claire Renard-Guillet, Bruno Chatton, Kentaro Inoue, Takeru Uchiyama, Ken-ichi Ishibashi, Takuji Yamada, Naohito Ohno,[...]. Nat Immunol 2015
101
38

Social isolation stress induces ATF-7 phosphorylation and impairs silencing of the 5-HT 5B receptor gene.
Toshio Maekawa, Seungjoon Kim, Daisuke Nakai, Chieko Makino, Tsuyoshi Takagi, Hiroo Ogura, Kazuyuki Yamada, Bruno Chatton, Shunsuke Ishii. EMBO J 2010
40
38


Inheritance of stress-induced, ATF-2-dependent epigenetic change.
Ki-Hyeon Seong, Dong Li, Hideyuki Shimizu, Ryoichi Nakamura, Shunsuke Ishii. Cell 2011
181
30



Leucine zipper structure of the protein CRE-BP1 binding to the cyclic AMP response element in brain.
T Maekawa, H Sakura, C Kanei-Ishii, T Sudo, T Yoshimura, J Fujisawa, M Yoshida, S Ishii. EMBO J 1989
380
23

Transcription factor ATF2 regulation by the JNK signal transduction pathway.
S Gupta, D Campbell, B Dérijard, R J Davis. Science 1995
23

Transgenerational epigenetic inheritance: myths and mechanisms.
Edith Heard, Robert A Martienssen. Cell 2014
736
23


Telomere measurement by quantitative PCR.
Richard M Cawthon. Nucleic Acids Res 2002
23

Telomere shortening by transgenerational transmission of TNF-α-induced TERRA via ATF7.
Binbin Liu, Toshio Maekawa, Keisuke Yoshida, Nhung Hong Ly, Kimiko Inoue, Ayumi Hasegawa, Bruno Chatton, Atsuo Ogura, Shunsuke Ishii. Nucleic Acids Res 2019
13
23

TPP1 is a homologue of ciliate TEBP-beta and interacts with POT1 to recruit telomerase.
Huawei Xin, Dan Liu, Ma Wan, Amin Safari, Hyeung Kim, Wen Sun, Matthew S O'Connor, Zhou Songyang. Nature 2007
361
15

The POT1-TPP1 telomere complex is a telomerase processivity factor.
Feng Wang, Elaine R Podell, Arthur J Zaug, Yuting Yang, Paul Baciu, Thomas R Cech, Ming Lei. Nature 2007
469
15

Mammalian telomeres resemble fragile sites and require TRF1 for efficient replication.
Agnel Sfeir, Settapong T Kosiyatrakul, Dirk Hockemeyer, Sheila L MacRae, Jan Karlseder, Carl L Schildkraut, Titia de Lange. Cell 2009
650
15


Stress exposure in intrauterine life is associated with shorter telomere length in young adulthood.
Sonja Entringer, Elissa S Epel, Robert Kumsta, Jue Lin, Dirk H Hellhammer, Elizabeth H Blackburn, Stefan Wüst, Pathik D Wadhwa. Proc Natl Acad Sci U S A 2011
228
15

Chronic oxidative stress induces a tissue-specific reduction in telomere length in CAST/Ei mice.
Valerie Cattan, Nathalie Mercier, Jeffrey P Gardner, Veronique Regnault, Carlos Labat, Jenni Mäki-Jouppila, Rosine Nzietchueng, Athanase Benetos, Masayuki Kimura, Abraham Aviv,[...]. Free Radic Biol Med 2008
74
15

Accelerated telomere shortening in response to life stress.
Elissa S Epel, Elizabeth H Blackburn, Jue Lin, Firdaus S Dhabhar, Nancy E Adler, Jason D Morrow, Richard M Cawthon. Proc Natl Acad Sci U S A 2004
15

Cold-induced epigenetic programming of the sperm enhances brown adipose tissue activity in the offspring.
Wenfei Sun, Hua Dong, Anton S Becker, Dianne H Dapito, Salvatore Modica, Gerald Grandl, Lennart Opitz, Vissarion Efthymiou, Leon G Straub, Gitalee Sarker,[...]. Nat Med 2018
44
15

ATF7 ablation prevents diet-induced obesity and insulin resistance.
Yang Liu, Toshio Maekawa, Keisuke Yoshida, Tamio Furuse, Hideki Kaneda, Shigeharu Wakana, Shunsuke Ishii. Biochem Biophys Res Commun 2016
8
25

Telomere Length in Newborns is Related to Maternal Stress During Pregnancy.
Tabea Sarah Send, Maria Gilles, Veryan Codd, Isabell Wolf, Svenja Bardtke, Fabian Streit, Jana Strohmaier, Josef Frank, Darja Schendel, Mark W Sütterlin,[...]. Neuropsychopharmacology 2017
41
15

Maternal pre-pregnancy body mass index and newborn telomere length.
Dries S Martens, Michelle Plusquin, Wilfried Gyselaers, Immaculata De Vivo, Tim S Nawrot. BMC Med 2016
74
15

Association Between Maternal-Perceived Psychological Stress and Fetal Telomere Length.
Hamisu M Salihu, Lindsey M King, Chiaka Nwoga, Arnut Paothong, Anupam Pradhan, Phillip J Marty, Rana Daas, Valerie E Whiteman. South Med J 2016
21
15


Telomere length in early life predicts lifespan.
Britt J Heidinger, Jonathan D Blount, Winnie Boner, Kate Griffiths, Neil B Metcalfe, Pat Monaghan. Proc Natl Acad Sci U S A 2012
374
15

Identification of seven loci affecting mean telomere length and their association with disease.
Veryan Codd, Christopher P Nelson, Eva Albrecht, Massimo Mangino, Joris Deelen, Jessica L Buxton, Jouke Jan Hottenga, Krista Fischer, Tõnu Esko, Ida Surakka,[...]. Nat Genet 2013
583
15

The fetal programming of telomere biology hypothesis: an update.
Sonja Entringer, Karin de Punder, Claudia Buss, Pathik D Wadhwa. Philos Trans R Soc Lond B Biol Sci 2018
70
15


Maternal psychosocial stress during pregnancy is associated with newborn leukocyte telomere length.
Sonja Entringer, Elissa S Epel, Jue Lin, Claudia Buss, Babak Shahbaba, Elizabeth H Blackburn, Hyagriv N Simhan, Pathik D Wadhwa. Am J Obstet Gynecol 2013
129
15

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
15

p38beta2-mediated phosphorylation and sumoylation of ATF7 are mutually exclusive.
Barbara Camuzeaux, Jessica Diring, Pierre-Jacques Hamard, Mustapha Oulad-Abdelghani, Mariel Donzeau, Marc Vigneron, Claude Kedinger, Bruno Chatton. J Mol Biol 2008
15
15

Epigenetic programming of monocyte-to-macrophage differentiation and trained innate immunity.
Sadia Saeed, Jessica Quintin, Hindrik H D Kerstens, Nagesha A Rao, Ali Aghajanirefah, Filomena Matarese, Shih-Chin Cheng, Jacqueline Ratter, Kim Berentsen, Martijn A van der Ent,[...]. Science 2014
765
15

Disruption of histone methylation in developing sperm impairs offspring health transgenerationally.
Keith Siklenka, Serap Erkek, Maren Godmann, Romain Lambrot, Serge McGraw, Christine Lafleur, Tamara Cohen, Jianguo Xia, Matthew Suderman, Michael Hallett,[...]. Science 2015
234
15

Identifying ChIP-seq enrichment using MACS.
Jianxing Feng, Tao Liu, Bo Qin, Yong Zhang, Xiaole Shirley Liu. Nat Protoc 2012
676
15

Mapping of histone-binding sites in histone replacement-completed spermatozoa.
Keisuke Yoshida, Masafumi Muratani, Hiromitsu Araki, Fumihito Miura, Takehiro Suzuki, Naoshi Dohmae, Yuki Katou, Katsuhiko Shirahige, Takashi Ito, Shunsuke Ishii. Nat Commun 2018
29
15


deepTools2: a next generation web server for deep-sequencing data analysis.
Fidel Ramírez, Devon P Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike Dündar, Thomas Manke. Nucleic Acids Res 2016
15

Chronic high-fat diet in fathers programs β-cell dysfunction in female rat offspring.
Sheau-Fang Ng, Ruby C Y Lin, D Ross Laybutt, Romain Barres, Julie A Owens, Margaret J Morris. Nature 2010
802
15

Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals.
Benjamin R Carone, Lucas Fauquier, Naomi Habib, Jeremy M Shea, Caroline E Hart, Ruowang Li, Christoph Bock, Chengjian Li, Hongcang Gu, Phillip D Zamore,[...]. Cell 2010
686
15

SPORTS1.0: A Tool for Annotating and Profiling Non-coding RNAs Optimized for rRNA- and tRNA-derived Small RNAs.
Junchao Shi, Eun-A Ko, Kenton M Sanders, Qi Chen, Tong Zhou. Genomics Proteomics Bioinformatics 2018
33
15

Differential expression in SAGE: accounting for normal between-library variation.
Keith A Baggerly, Li Deng, Jeffrey S Morris, C Marcelo Aldaz. Bioinformatics 2003
227
15

Targeted and Persistent 8-Oxoguanine Base Damage at Telomeres Promotes Telomere Loss and Crisis.
Elise Fouquerel, Ryan P Barnes, Shikhar Uttam, Simon C Watkins, Marcel P Bruchez, Patricia L Opresko. Mol Cell 2019
76
15

The impact of oxidative DNA damage and stress on telomere homeostasis.
Ryan P Barnes, Elise Fouquerel, Patricia L Opresko. Mech Ageing Dev 2019
109
15

Do glucocorticoids mediate the link between environmental conditions and telomere dynamics in wild vertebrates? A review.
Frédéric Angelier, David Costantini, Pierre Blévin, Olivier Chastel. Gen Comp Endocrinol 2018
56
15

MicroRNA-125a influences breast cancer stem cells by targeting leukemia inhibitory factor receptor which regulates the Hippo signaling pathway.
Sushmita Bose Nandy, Arunkumar Arumugam, Ramadevi Subramani, Diego Pedroza, Keziah Hernandez, Edward Saltzstein, Rajkumar Lakshmanaswamy. Oncotarget 2015
48
7

Membrane-associated Hsp72 from tumor-derived exosomes mediates STAT3-dependent immunosuppressive function of mouse and human myeloid-derived suppressor cells.
Fanny Chalmin, Sylvain Ladoire, Grégoire Mignot, Julie Vincent, Mélanie Bruchard, Jean-Paul Remy-Martin, Wilfrid Boireau, Alain Rouleau, Benoit Simon, David Lanneau,[...]. J Clin Invest 2010
622
7

Nitric oxide mediates metabolic coupling of omentum-derived adipose stroma to ovarian and endometrial cancer cells.
Bahar Salimian Rizi, Christine Caneba, Aleksandra Nowicka, Ahmad W Nabiyar, Xinran Liu, Kevin Chen, Ann Klopp, Deepak Nagrath. Cancer Res 2015
43
7

Adaptive Chromatin Remodeling Drives Glioblastoma Stem Cell Plasticity and Drug Tolerance.
Brian B Liau, Cem Sievers, Laura K Donohue, Shawn M Gillespie, William A Flavahan, Tyler E Miller, Andrew S Venteicher, Christine H Hebert, Christopher D Carey, Scott J Rodig,[...]. Cell Stem Cell 2017
192
7

Cancer genetics and epigenetics: two sides of the same coin?
Jueng Soo You, Peter A Jones. Cancer Cell 2012
633
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.