A citation-based method for searching scientific literature

Md Nadim Hossain, Kazushi Suzuki, Megumi Iwano, Tomoki Matsuda, Takeharu Nagai. ACS Chem Biol 2018
Times Cited: 15







List of co-cited articles
176 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Five colour variants of bright luminescent protein for real-time multicolour bioimaging.
Kazushi Suzuki, Taichi Kimura, Hajime Shinoda, Guirong Bai, Matthew J Daniels, Yoshiyuki Arai, Masahiro Nakano, Takeharu Nagai. Nat Commun 2016
95
73

Engineered luciferase reporter from a deep sea shrimp utilizing a novel imidazopyrazinone substrate.
Mary P Hall, James Unch, Brock F Binkowski, Michael P Valley, Braeden L Butler, Monika G Wood, Paul Otto, Kristopher Zimmerman, Gediminas Vidugiris, Thomas Machleidt,[...]. ACS Chem Biol 2012
669
60

Luminescent proteins for high-speed single-cell and whole-body imaging.
Kenta Saito, Y-F Chang, Kazuki Horikawa, Noriyuki Hatsugai, Yuriko Higuchi, Mitsuru Hashida, Yu Yoshida, Tomoki Matsuda, Yoshiyuki Arai, Takeharu Nagai. Nat Commun 2012
168
53

Coupling optogenetic stimulation with NanoLuc-based luminescence (BRET) Ca++ sensing.
Jie Yang, Derrick Cumberbatch, Samuel Centanni, Shu-Qun Shi, Danny Winder, Donna Webb, Carl Hirschie Johnson. Nat Commun 2016
44
46

A bright cyan-excitable orange fluorescent protein facilitates dual-emission microscopy and enhances bioluminescence imaging in vivo.
Jun Chu, Younghee Oh, Alex Sens, Niloufar Ataie, Hod Dana, John J Macklin, Tal Laviv, Erik S Welf, Kevin M Dean, Feijie Zhang,[...]. Nat Biotechnol 2016
112
40

Genetically encoded bioluminescent voltage indicator for multi-purpose use in wide range of bioimaging.
Shigenori Inagaki, Hidekazu Tsutsui, Kazushi Suzuki, Masakazu Agetsuma, Yoshiyuki Arai, Yuka Jinno, Guirong Bai, Matthew J Daniels, Yasushi Okamura, Tomoki Matsuda,[...]. Sci Rep 2017
33
33

A Bioluminescent Ca2+ Indicator Based on a Topological Variant of GCaMP6s.
Yong Qian, Vladimir Rancic, Jiahui Wu, Klaus Ballanyi, Robert E Campbell. Chembiochem 2019
21
33

Red-shifted luciferase-luciferin pairs for enhanced bioluminescence imaging.
Hsien-Wei Yeh, Omran Karmach, Ao Ji, David Carter, Manuela M Martins-Green, Hui-Wang Ai. Nat Methods 2017
74
33

Circularly permuted green fluorescent proteins engineered to sense Ca2+.
T Nagai, A Sawano, E S Park, A Miyawaki. Proc Natl Acad Sci U S A 2001
690
26

Imaging intraorganellar Ca2+ at subcellular resolution using CEPIA.
Junji Suzuki, Kazunori Kanemaru, Kuniaki Ishii, Masamichi Ohkura, Yohei Okubo, Masamitsu Iino. Nat Commun 2014
209
26


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
26

Dual Readout BRET/FRET Sensors for Measuring Intracellular Zinc.
Stijn J A Aper, Pieterjan Dierickx, Maarten Merkx. ACS Chem Biol 2016
32
26

Expanded palette of Nano-lanterns for real-time multicolor luminescence imaging.
Akira Takai, Masahiro Nakano, Kenta Saito, Remi Haruno, Tomonobu M Watanabe, Tatsuya Ohyanagi, Takashi Jin, Yasushi Okada, Takeharu Nagai. Proc Natl Acad Sci U S A 2015
68
26

Single-cell bioluminescence imaging of deep tissue in freely moving animals.
Satoshi Iwano, Mayu Sugiyama, Hiroshi Hama, Akiya Watakabe, Naomi Hasegawa, Takahiro Kuchimaru, Kazumasa Z Tanaka, Megumu Takahashi, Yoko Ishida, Junichi Hata,[...]. Science 2018
121
26

Genetically encoded Ca(2+) indicators: properties and evaluation.
Vadim Pérez Koldenkova, Takeharu Nagai. Biochim Biophys Acta 2013
106
26

Consensus guided mutagenesis of Renilla luciferase yields enhanced stability and light output.
Andreas Markus Loening, Timothy David Fenn, Anna M Wu, Sanjiv Sam Gambhir. Protein Eng Des Sel 2006
282
26

NanoLuc Complementation Reporter Optimized for Accurate Measurement of Protein Interactions in Cells.
Andrew S Dixon, Marie K Schwinn, Mary P Hall, Kris Zimmerman, Paul Otto, Thomas H Lubben, Braeden L Butler, Brock F Binkowski, Thomas Machleidt, Thomas A Kirkland,[...]. ACS Chem Biol 2016
362
26


Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
20

Improving FRET dynamic range with bright green and red fluorescent proteins.
Amy J Lam, François St-Pierre, Yiyang Gong, Jesse D Marshall, Paula J Cranfill, Michelle A Baird, Michael R McKeown, Jörg Wiedenmann, Michael W Davidson, Mark J Schnitzer,[...]. Nat Methods 2012
452
20


Subcellular Imaging of Voltage and Calcium Signals Reveals Neural Processing In Vivo.
Helen H Yang, François St-Pierre, Xulu Sun, Xiaozhe Ding, Michael Z Lin, Thomas R Clandinin. Cell 2016
130
20

Circular permutation and receptor insertion within green fluorescent proteins.
G S Baird, D A Zacharias, R Y Tsien. Proc Natl Acad Sci U S A 1999
602
20

Visualization of ATP levels inside single living cells with fluorescence resonance energy transfer-based genetically encoded indicators.
Hiromi Imamura, Kim P Huynh Nhat, Hiroko Togawa, Kenta Saito, Ryota Iino, Yasuyuki Kato-Yamada, Takeharu Nagai, Hiroyuki Noji. Proc Natl Acad Sci U S A 2009
589
20

Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin.
A Miyawaki, J Llopis, R Heim, J M McCaffery, J A Adams, M Ikura, R Y Tsien. Nature 1997
20

Red fluorescent genetically encoded Ca2+ indicators for use in mitochondria and endoplasmic reticulum.
Jiahui Wu, David L Prole, Yi Shen, Zhihong Lin, Aswini Gnanasekaran, Yingjie Liu, Lidong Chen, Hang Zhou, S R Wayne Chen, Yuriy M Usachev,[...]. Biochem J 2014
84
20

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
379
20

Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.
Jasper Akerboom, Nicole Carreras Calderón, Lin Tian, Sebastian Wabnig, Matthias Prigge, Johan Tolö, Andrew Gordus, Michael B Orger, Kristen E Severi, John J Macklin,[...]. Front Mol Neurosci 2013
396
20

An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
758
20

Semisynthetic sensor proteins enable metabolic assays at the point of care.
Qiuliyang Yu, Lin Xue, Julien Hiblot, Rudolf Griss, Sebastian Fabritz, Clothilde Roux, Pierre-Alain Binz, Dorothea Haas, Jürgen G Okun, Kai Johnsson. Science 2018
55
20

Use of a cAMP BRET sensor to characterize a novel regulation of cAMP by the sphingosine 1-phosphate/G13 pathway.
Lily I Jiang, Julie Collins, Richard Davis, Keng-Mean Lin, Dianne DeCamp, Tamara Roach, Robert Hsueh, Robert A Rebres, Elliott M Ross, Ronald Taussig,[...]. J Biol Chem 2007
201
20

C6-Deoxy coelenterazine analogues as an efficient substrate for glow luminescence reaction of nanoKAZ: the mutated catalytic 19 kDa component of Oplophorus luciferase.
Satoshi Inouye, Jun-ichi Sato, Yuiko Sahara-Miura, Suguru Yoshida, Hajime Kurakata, Takamitsu Hosoya. Biochem Biophys Res Commun 2013
29
20

A platform of BRET-FRET hybrid biosensors for optogenetics, chemical screening, and in vivo imaging.
Naoki Komatsu, Kenta Terai, Ayako Imanishi, Yuji Kamioka, Kenta Sumiyama, Takashi Jin, Yasushi Okada, Takeharu Nagai, Michiyuki Matsuda. Sci Rep 2018
30
20

Dual-Color Bioluminescent Sensor Proteins for Therapeutic Drug Monitoring of Antitumor Antibodies.
Martijn van Rosmalen, Yan Ni, Daan F M Vervoort, Remco Arts, Susann K J Ludwig, Maarten Merkx. Anal Chem 2018
27
20

A luciferin analogue generating near-infrared bioluminescence achieves highly sensitive deep-tissue imaging.
Takahiro Kuchimaru, Satoshi Iwano, Masahiro Kiyama, Shun Mitsumata, Tetsuya Kadonosono, Haruki Niwa, Shojiro Maki, Shinae Kizaka-Kondoh. Nat Commun 2016
98
20

Auto-luminescent genetically-encoded ratiometric indicator for real-time Ca2+ imaging at the single cell level.
Kenta Saito, Noriyuki Hatsugai, Kazuki Horikawa, Kentaro Kobayashi, Toru Matsu-Ura, Katsuhiko Mikoshiba, Takeharu Nagai. PLoS One 2010
43
20

Detection of Antibodies in Blood Plasma Using Bioluminescent Sensor Proteins and a Smartphone.
Remco Arts, Ilona den Hartog, Stefan E Zijlema, Vito Thijssen, Stan H E van der Beelen, Maarten Merkx. Anal Chem 2016
62
20


Rational design of a high-affinity, fast, red calcium indicator R-CaMP2.
Masatoshi Inoue, Atsuya Takeuchi, Shin-ichiro Horigane, Masamichi Ohkura, Keiko Gengyo-Ando, Hajime Fujii, Satoshi Kamijo, Sayaka Takemoto-Kimura, Masanobu Kano, Junichi Nakai,[...]. Nat Methods 2015
144
13

An ultramarine fluorescent protein with increased photostability and pH insensitivity.
Wataru Tomosugi, Tomoki Matsuda, Tomomi Tani, Tomomi Nemoto, Ippei Kotera, Kenta Saito, Kazuki Horikawa, Takeharu Nagai. Nat Methods 2009
79
13


A long Stokes shift red fluorescent Ca2+ indicator protein for two-photon and ratiometric imaging.
Jiahui Wu, Ahmed S Abdelfattah, Loïs S Miraucourt, Elena Kutsarova, Araya Ruangkittisakul, Hang Zhou, Klaus Ballanyi, Geoffrey Wicks, Mikhail Drobizhev, Aleksander Rebane,[...]. Nat Commun 2014
52
13

Fluorescent Ca2+ indicators directly inhibit the Na,K-ATPase and disrupt cellular functions.
Nathan A Smith, Benjamin T Kress, Yuan Lu, Devin Chandler-Militello, Abdellatif Benraiss, Maiken Nedergaard. Sci Signal 2018
47
13

Diversity in ATP concentrations in a single bacterial cell population revealed by quantitative single-cell imaging.
Hideyuki Yaginuma, Shinnosuke Kawai, Kazuhito V Tabata, Keisuke Tomiyama, Akira Kakizuka, Tamiki Komatsuzaki, Hiroyuki Noji, Hiromi Imamura. Sci Rep 2014
165
13


mRuby, a bright monomeric red fluorescent protein for labeling of subcellular structures.
Simone Kredel, Franz Oswald, Karin Nienhaus, Karen Deuschle, Carlheinz Röcker, Michael Wolff, Ralf Heilker, G Ulrich Nienhaus, Jörg Wiedenmann. PLoS One 2009
133
13

A genetically encoded calcium indicator for chronic in vivo two-photon imaging.
Marco Mank, Alexandre Ferrão Santos, Stephan Direnberger, Thomas D Mrsic-Flogel, Sonja B Hofer, Valentin Stein, Thomas Hendel, Dierk F Reiff, Christiaan Levelt, Alexander Borst,[...]. Nat Methods 2008
324
13

Genetically encoded green fluorescent Ca2+ indicators with improved detectability for neuronal Ca2+ signals.
Masamichi Ohkura, Takuya Sasaki, Junko Sadakari, Keiko Gengyo-Ando, Yuko Kagawa-Nagamura, Chiaki Kobayashi, Yuji Ikegaya, Junichi Nakai. PLoS One 2012
139
13

Measurement of cytosolic free Ca2+ with quin2.
R Tsien, T Pozzan. Methods Enzymol 1989
332
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.