A citation-based method for searching scientific literature

Danielle Braun, Jiabei Yang, Molly Griffin, Giovanni Parmigiani, Kevin S Hughes. J Genet Couns 2018
Times Cited: 17







List of co-cited articles
74 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Validation of a Semiautomated Natural Language Processing-Based Procedure for Meta-Analysis of Cancer Susceptibility Gene Penetrance.
Zhengyi Deng, Kanhua Yin, Yujia Bao, Victor Diego Armengol, Cathy Wang, Ankur Tiwari, Regina Barzilay, Giovanni Parmigiani, Danielle Braun, Kevin S Hughes. JCO Clin Cancer Inform 2019
10
70

Using Machine Learning and Natural Language Processing to Review and Classify the Medical Literature on Cancer Susceptibility Genes.
Yujia Bao, Zhengyi Deng, Yan Wang, Heeyoon Kim, Victor Diego Armengol, Francisco Acevedo, Nofal Ouardaoui, Cathy Wang, Giovanni Parmigiani, Regina Barzilay,[...]. JCO Clin Cancer Inform 2019
9
66

Meta-analysis of BRCA1 and BRCA2 penetrance.
Sining Chen, Giovanni Parmigiani. J Clin Oncol 2007
29

Consensus Guidelines on Genetic` Testing for Hereditary Breast Cancer from the American Society of Breast Surgeons.
Eric R Manahan, Henry M Kuerer, Molly Sebastian, Kevin S Hughes, Judy C Boughey, David M Euhus, Susan K Boolbol, Walton A Taylor. Ann Surg Oncol 2019
52
29

Natural language processing to facilitate breast cancer research and management.
Kevin S Hughes, Jingan Zhou, Yujia Bao, Preeti Singh, Jin Wang, Kanhua Yin. Breast J 2020
7
71

What's New in Genetic Testing for Cancer Susceptibility?
Jennifer K Plichta, Molly Griffin, Joseph Thakuria, Kevin S Hughes. Oncology (Williston Park) 2016
9
33

Penetrance of ATM Gene Mutations in Breast Cancer: A Meta-Analysis of Different Measures of Risk.
Monica Marabelli, Su-Chun Cheng, Giovanni Parmigiani. Genet Epidemiol 2016
48
17

The feasibility of using natural language processing to extract clinical information from breast pathology reports.
Julliette M Buckley, Suzanne B Coopey, John Sharko, Fernanda Polubriaginof, Brian Drohan, Ahmet K Belli, Elizabeth M H Kim, Judy E Garber, Barbara L Smith, Michele A Gadd,[...]. J Pathol Inform 2012
52
17

Cancer risks associated with germline mutations in MLH1, MSH2, and MSH6 genes in Lynch syndrome.
Valérie Bonadona, Bernard Bonaïti, Sylviane Olschwang, Sophie Grandjouan, Laetitia Huiart, Michel Longy, Rosine Guimbaud, Bruno Buecher, Yves-Jean Bignon, Olivier Caron,[...]. JAMA 2011
576
17

The risk of gastric cancer in carriers of CHEK2 mutations.
Urszula Teodorczyk, Cezary Cybulski, Dominika Wokołorczyk, Anna Jakubowska, Teresa Starzyńska, Małgorzata Lawniczak, Paweł Domagała, Katarzyna Ferenc, Krzysztof Marlicz, Zbigniew Banaszkiewicz,[...]. Fam Cancer 2013
31
17


CHEK2 mutations and the risk of papillary thyroid cancer.
Monika Siołek, Cezary Cybulski, Danuta Gąsior-Perczak, Artur Kowalik, Beata Kozak-Klonowska, Aldona Kowalska, Małgorzata Chłopek, Wojciech Kluźniak, Dominika Wokołorczyk, Iwona Pałyga,[...]. Int J Cancer 2015
60
17

Breast-cancer risk in families with mutations in PALB2.
Antonis C Antoniou, Silvia Casadei, Tuomas Heikkinen, Daniel Barrowdale, Katri Pylkäs, Jonathan Roberts, Andrew Lee, Deepak Subramanian, Kim De Leeneer, Florentia Fostira,[...]. N Engl J Med 2014
472
11

Recent Enhancements to the Genetic Risk Prediction Model BRCAPRO.
Emanuele Mazzola, Amanda Blackford, Giovanni Parmigiani, Swati Biswas. Cancer Inform 2015
19
11

Probability of carrying a mutation of breast-ovarian cancer gene BRCA1 based on family history.
D A Berry, G Parmigiani, J Sanchez, J Schildkraut, E Winer. J Natl Cancer Inst 1997
253
11

Risk of pancreatic cancer in families with Lynch syndrome.
Fay Kastrinos, Bhramar Mukherjee, Nabihah Tayob, Fei Wang, Jennifer Sparr, Victoria M Raymond, Prathap Bandipalliam, Elena M Stoffel, Stephen B Gruber, Sapna Syngal. JAMA 2009
281
11

Age- and Tumor Subtype-Specific Breast Cancer Risk Estimates for CHEK2*1100delC Carriers.
Marjanka K Schmidt, Frans Hogervorst, Richard van Hien, Sten Cornelissen, Annegien Broeks, Muriel A Adank, Hanne Meijers, Quinten Waisfisz, Antoinette Hollestelle, Mieke Schutte,[...]. J Clin Oncol 2016
74
11

BayesMendel: an R environment for Mendelian risk prediction.
Sining Chen, Wenyi Wang, Karl W Broman, Hormuzd A Katki, Giovanni Parmigiani. Stat Appl Genet Mol Biol 2004
48
11

Risk assessment, genetic counseling, and genetic testing for BRCA-related cancer in women: a systematic review to update the U.S. Preventive Services Task Force recommendation.
Heidi D Nelson, Miranda Pappas, Bernadette Zakher, Jennifer Priest Mitchell, Leila Okinaka-Hu, Rongwei Fu. Ann Intern Med 2014
151
11

The BOADICEA model of genetic susceptibility to breast and ovarian cancers: updates and extensions.
A C Antoniou, A P Cunningham, J Peto, D G Evans, F Lalloo, S A Narod, H A Risch, J E Eyfjord, J L Hopper, M C Southey,[...]. Br J Cancer 2008
299
11

Essential elements of genetic cancer risk assessment, counseling, and testing: updated recommendations of the National Society of Genetic Counselors.
Bronson D Riley, Julie O Culver, Cécile Skrzynia, Leigha A Senter, June A Peters, Josephine W Costalas, Faith Callif-Daley, Sherry C Grumet, Katherine S Hunt, Rebecca S Nagy,[...]. J Genet Couns 2012
185
11


Projecting the Supply and Demand for Certified Genetic Counselors: a Workforce Study.
Jennifer M Hoskovec, R L Bennett, M E Carey, J E DaVanzo, M Dougherty, S E Hahn, B S LeRoy, S O'Neal, J G Richardson, C A Wicklund. J Genet Couns 2018
114
11

Web Platform vs In-Person Genetic Counselor for Return of Carrier Results From Exome Sequencing: A Randomized Clinical Trial.
Barbara B Biesecker, Katie L Lewis, Kendall L Umstead, Jennifer J Johnston, Erin Turbitt, Kristen P Fishler, John H Patton, Ilana M Miller, Alexis R Heidlebaugh, Leslie G Biesecker. JAMA Intern Med 2018
42
11

Correlating mammographic and pathologic findings in clinical decision support using natural language processing and data mining methods.
Tejal A Patel, Mamta Puppala, Richard O Ogunti, Joe E Ensor, Tiancheng He, Jitesh B Shewale, Donna P Ankerst, Virginia G Kaklamani, Angel A Rodriguez, Stephen T C Wong,[...]. Cancer 2017
22
11

ClinPhen extracts and prioritizes patient phenotypes directly from medical records to expedite genetic disease diagnosis.
Cole A Deisseroth, Johannes Birgmeier, Ethan E Bodle, Jennefer N Kohler, Dena R Matalon, Yelena Nazarenko, Casie A Genetti, Catherine A Brownstein, Klaus Schmitz-Abe, Kelly Schoch,[...]. Genet Med 2019
21
11


Short-term risk of colorectal cancer in individuals with lynch syndrome: a meta-analysis.
Mark A Jenkins, James G Dowty, Driss Ait Ouakrim, John D Mathews, John L Hopper, Youenn Drouet, Christine Lasset, Valérie Bonadona, Aung Ko Win. J Clin Oncol 2015
23
11

Reducing workload in systematic review preparation using automated citation classification.
A M Cohen, W R Hersh, K Peterson, Po-Yin Yen. J Am Med Inform Assoc 2006
82
11

Machine learning to parse breast pathology reports in Chinese.
Rong Tang, Lizhi Ouyang, Clara Li, Yue He, Molly Griffin, Alphonse Taghian, Barbara Smith, Adam Yala, Regina Barzilay, Kevin Hughes. Breast Cancer Res Treat 2018
8
25

Reducing systematic review workload through certainty-based screening.
Makoto Miwa, James Thomas, Alison O'Mara-Eves, Sophia Ananiadou. J Biomed Inform 2014
41
11

Semi-automated screening of biomedical citations for systematic reviews.
Byron C Wallace, Thomas A Trikalinos, Joseph Lau, Carla Brodley, Christopher H Schmid. BMC Bioinformatics 2010
109
11

Preferred reporting items for systematic reviews and meta-analyses: the PRISMA statement.
David Moher, Alessandro Liberati, Jennifer Tetzlaff, Douglas G Altman. PLoS Med 2009
11

Exploiting the systematic review protocol for classification of medical abstracts.
Oana Frunza, Diana Inkpen, Stan Matwin, William Klement, Peter O'Blenis. Artif Intell Med 2011
15
13

How Artificial Intelligence Can Improve Our Understanding of the Genes Associated with Endometriosis: Natural Language Processing of the PubMed Database.
J Bouaziz, R Mashiach, S Cohen, A Kedem, A Baron, M Zajicek, I Feldman, D Seidman, D Soriano. Biomed Res Int 2018
6
33

Using machine learning to parse breast pathology reports.
Adam Yala, Regina Barzilay, Laura Salama, Molly Griffin, Grace Sollender, Aditya Bardia, Constance Lehman, Julliette M Buckley, Suzanne B Coopey, Fernanda Polubriaginof,[...]. Breast Cancer Res Treat 2017
39
11

Advances in natural language processing.
Julia Hirschberg, Christopher D Manning. Science 2015
98
11

Natural Language Processing in Oncology: A Review.
Wen-Wai Yim, Meliha Yetisgen, William P Harris, Sharon W Kwan. JAMA Oncol 2016
79
11

A clinical guide to hereditary cancer panel testing: evaluation of gene-specific cancer associations and sensitivity of genetic testing criteria in a cohort of 165,000 high-risk patients.
Holly LaDuca, Eric C Polley, Amal Yussuf, Lily Hoang, Stephanie Gutierrez, Steven N Hart, Siddhartha Yadav, Chunling Hu, Jie Na, David E Goldgar,[...]. Genet Med 2020
53
11


Risks of Lynch syndrome cancers for MSH6 mutation carriers.
Laura Baglietto, Noralane M Lindor, James G Dowty, Darren M White, Anja Wagner, Encarna B Gomez Garcia, Annette H J T Vriends, Nicola R Cartwright, Rebecca A Barnetson, Susan M Farrington,[...]. J Natl Cancer Inst 2010
230
11

Cancer risks for MLH1 and MSH2 mutation carriers.
James G Dowty, Aung K Win, Daniel D Buchanan, Noralane M Lindor, Finlay A Macrae, Mark Clendenning, Yoland C Antill, Stephen N Thibodeau, Graham Casey, Steve Gallinger,[...]. Hum Mutat 2013
149
11


Prediction of germline mutations and cancer risk in the Lynch syndrome.
Sining Chen, Wenyi Wang, Shing Lee, Khedoudja Nafa, Johanna Lee, Kathy Romans, Patrice Watson, Stephen B Gruber, David Euhus, Kenneth W Kinzler,[...]. JAMA 2006
243
11

Meta-analysis in clinical trials.
R DerSimonian, N Laird. Control Clin Trials 1986
11



A breast cancer prediction model incorporating familial and personal risk factors.
Jonathan Tyrer, Stephen W Duffy, Jack Cuzick. Stat Med 2004
648
11

Deleterious Germline Mutations in Patients With Apparently Sporadic Pancreatic Adenocarcinoma.
Koji Shindo, Jun Yu, Masaya Suenaga, Shahriar Fesharakizadeh, Christy Cho, Anne Macgregor-Das, Abdulrehman Siddiqui, P Dane Witmer, Koji Tamura, Tae Jun Song,[...]. J Clin Oncol 2017
157
11

Prevalence of germ-line mutations in cancer genes among pancreatic cancer patients with a positive family history.
Kari G Chaffee, Ann L Oberg, Robert R McWilliams, Neil Majithia, Brian A Allen, John Kidd, Nanda Singh, Anne-Renee Hartman, Richard J Wenstrup, Gloria M Petersen. Genet Med 2018
52
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.