A citation-based method for searching scientific literature

Raffaella Nativio, Greg Donahue, Amit Berson, Yemin Lan, Alexandre Amlie-Wolf, Ferit Tuzer, Jon B Toledo, Sager J Gosai, Brian D Gregory, Claudio Torres, John Q Trojanowski, Li-San Wang, F Brad Johnson, Nancy M Bonini, Shelley L Berger. Nat Neurosci 2018
Times Cited: 90







List of co-cited articles
926 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease.
Elizabeta Gjoneska, Andreas R Pfenning, Hansruedi Mathys, Gerald Quon, Anshul Kundaje, Li-Huei Tsai, Manolis Kellis. Nature 2015
302
20

Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci.
Philip L De Jager, Gyan Srivastava, Katie Lunnon, Jeremy Burgess, Leonard C Schalkwyk, Lei Yu, Matthew L Eaton, Brendan T Keenan, Jason Ernst, Cristin McCabe,[...]. Nat Neurosci 2014
460
17


Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.
J C Lambert, C A Ibrahim-Verbaas, D Harold, A C Naj, R Sims, C Bellenguez, A L DeStafano, J C Bis, G W Beecham, B Grenier-Boley,[...]. Nat Genet 2013
15

An epigenetic blockade of cognitive functions in the neurodegenerating brain.
Johannes Gräff, Damien Rei, Ji-Song Guan, Wen-Yuan Wang, Jinsoo Seo, Krista M Hennig, Thomas J F Nieland, Daniel M Fass, Patricia F Kao, Martin Kahn,[...]. Nature 2012
494
13

Epigenome-wide study uncovers large-scale changes in histone acetylation driven by tau pathology in aging and Alzheimer's human brains.
Hans-Ulrich Klein, Cristin McCabe, Elizabeta Gjoneska, Sarah E Sullivan, Belinda J Kaskow, Anna Tang, Robert V Smith, Jishu Xu, Andreas R Pfenning, Bradley E Bernstein,[...]. Nat Neurosci 2019
62
19

Methylomic profiling implicates cortical deregulation of ANK1 in Alzheimer's disease.
Katie Lunnon, Rebecca Smith, Eilis Hannon, Philip L De Jager, Gyan Srivastava, Manuela Volta, Claire Troakes, Safa Al-Sarraj, Joe Burrage, Ruby Macdonald,[...]. Nat Neurosci 2014
289
12


The hallmarks of aging.
Carlos López-Otín, Maria A Blasco, Linda Partridge, Manuel Serrano, Guido Kroemer. Cell 2013
11

The amyloid hypothesis of Alzheimer's disease at 25 years.
Dennis J Selkoe, John Hardy. EMBO Mol Med 2016
11

REST and stress resistance in ageing and Alzheimer's disease.
Tao Lu, Liviu Aron, Joseph Zullo, Ying Pan, Haeyoung Kim, Yiwen Chen, Tun-Hsiang Yang, Hyun-Min Kim, Derek Drake, X Shirley Liu,[...]. Nature 2014
378
11

Altered histone acetylation is associated with age-dependent memory impairment in mice.
Shahaf Peleg, Farahnaz Sananbenesi, Athanasios Zovoilis, Susanne Burkhardt, Sanaz Bahari-Javan, Roberto Carlos Agis-Balboa, Perla Cota, Jessica Lee Wittnam, Andreas Gogol-Doering, Lennart Opitz,[...]. Science 2010
611
11

DNA methylation analysis on purified neurons and glia dissects age and Alzheimer's disease-specific changes in the human cortex.
Gilles Gasparoni, Sebastian Bultmann, Pavlo Lutsik, Theo F J Kraus, Sabrina Sordon, Julia Vlcek, Vanessa Dietinger, Martina Steinmaurer, Melanie Haider, Christopher B Mulholland,[...]. Epigenetics Chromatin 2018
67
14

Alzheimer's disease: the amyloid cascade hypothesis.
J A Hardy, G A Higgins. Science 1992
10

Neuropathological stageing of Alzheimer-related changes.
H Braak, E Braak. Acta Neuropathol 1991
10

Epigenetic Regulation in Neurodegenerative Diseases.
Amit Berson, Raffaella Nativio, Shelley L Berger, Nancy M Bonini. Trends Neurosci 2018
85
10

Epigenetic Mechanisms of Longevity and Aging.
Payel Sen, Parisha P Shah, Raffaella Nativio, Shelley L Berger. Cell 2016
288
8

The Cellular Phase of Alzheimer's Disease.
Bart De Strooper, Eric Karran. Cell 2016
653
8

HDAC2 negatively regulates memory formation and synaptic plasticity.
Ji-Song Guan, Stephen J Haggarty, Emanuela Giacometti, Jan-Hermen Dannenberg, Nadine Joseph, Jun Gao, Thomas J F Nieland, Ying Zhou, Xinyu Wang, Ralph Mazitschek,[...]. Nature 2009
8

Consistent decrease in global DNA methylation and hydroxymethylation in the hippocampus of Alzheimer's disease patients.
Leonidas Chouliaras, Diego Mastroeni, Elaine Delvaux, Andrew Grover, Gunter Kenis, Patrick R Hof, Harry W M Steinbusch, Paul D Coleman, Bart P F Rutten, Daniel L A van den Hove. Neurobiol Aging 2013
232
8

Genetic meta-analysis of diagnosed Alzheimer's disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing.
Brian W Kunkle, Benjamin Grenier-Boley, Rebecca Sims, Joshua C Bis, Vincent Damotte, Adam C Naj, Anne Boland, Maria Vronskaya, Sven J van der Lee, Alexandre Amlie-Wolf,[...]. Nat Genet 2019
596
8

Tau promotes neurodegeneration through global chromatin relaxation.
Bess Frost, Martin Hemberg, Jada Lewis, Mel B Feany. Nat Neurosci 2014
207
7

Global epigenomic reconfiguration during mammalian brain development.
Ryan Lister, Eran A Mukamel, Joseph R Nery, Mark Urich, Clare A Puddifoot, Nicholas D Johnson, Jacinta Lucero, Yun Huang, Andrew J Dwork, Matthew D Schultz,[...]. Science 2013
7

Epigenetic Alterations in Alzheimer's Disease.
Jose V Sanchez-Mut, Johannes Gräff. Front Behav Neurosci 2015
82
8

Gene dose of apolipoprotein E type 4 allele and the risk of Alzheimer's disease in late onset families.
E H Corder, A M Saunders, W J Strittmatter, D E Schmechel, P C Gaskell, G W Small, A D Roses, J L Haines, M A Pericak-Vance. Science 1993
7

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
7

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
7

Epigenetics and aging.
Sangita Pal, Jessica K Tyler. Sci Adv 2016
261
7

Single-cell transcriptomic analysis of Alzheimer's disease.
Hansruedi Mathys, Jose Davila-Velderrain, Zhuyu Peng, Fan Gao, Shahin Mohammadi, Jennie Z Young, Madhvi Menon, Liang He, Fatema Abdurrob, Xueqiao Jiang,[...]. Nature 2019
408
7

Ageing as a risk factor for neurodegenerative disease.
Yujun Hou, Xiuli Dan, Mansi Babbar, Yong Wei, Steen G Hasselbalch, Deborah L Croteau, Vilhelm A Bohr. Nat Rev Neurol 2019
345
7

Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain.
Blue B Lake, Rizi Ai, Gwendolyn E Kaeser, Neeraj S Salathia, Yun C Yung, Rui Liu, Andre Wildberg, Derek Gao, Ho-Lim Fung, Song Chen,[...]. Science 2016
375
6


Histone H3K27ac separates active from poised enhancers and predicts developmental state.
Menno P Creyghton, Albert W Cheng, G Grant Welstead, Tristan Kooistra, Bryce W Carey, Eveline J Steine, Jacob Hanna, Michael A Lodato, Garrett M Frampton, Phillip A Sharp,[...]. Proc Natl Acad Sci U S A 2010
6

Chromosome conformation elucidates regulatory relationships in developing human brain.
Hyejung Won, Luis de la Torre-Ubieta, Jason L Stein, Neelroop N Parikshak, Jerry Huang, Carli K Opland, Michael J Gandal, Gavin J Sutton, Farhad Hormozdiari, Daning Lu,[...]. Nature 2016
243
6

Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease.
Bin Zhang, Chris Gaiteri, Liviu-Gabriel Bodea, Zhi Wang, Joshua McElwee, Alexei A Podtelezhnikov, Chunsheng Zhang, Tao Xie, Linh Tran, Radu Dobrin,[...]. Cell 2013
863
6

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
6


Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
6

Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease.
Denise Harold, Richard Abraham, Paul Hollingworth, Rebecca Sims, Amy Gerrish, Marian L Hamshere, Jaspreet Singh Pahwa, Valentina Moskvina, Kimberley Dowzell, Amy Williams,[...]. Nat Genet 2009
6

Epigenetic regulation of ageing: linking environmental inputs to genomic stability.
Bérénice A Benayoun, Elizabeth A Pollina, Anne Brunet. Nat Rev Mol Cell Biol 2015
276
6

The epigenetics of aging and neurodegeneration.
Roy Lardenoije, Artemis Iatrou, Gunter Kenis, Konstantinos Kompotis, Harry W M Steinbusch, Diego Mastroeni, Paul Coleman, Cynthia A Lemere, Patrick R Hof, Daniel L A van den Hove,[...]. Prog Neurobiol 2015
183
6

A molecular network of the aging human brain provides insights into the pathology and cognitive decline of Alzheimer's disease.
Sara Mostafavi, Chris Gaiteri, Sarah E Sullivan, Charles C White, Shinya Tasaki, Jishu Xu, Mariko Taga, Hans-Ulrich Klein, Ellis Patrick, Vitalina Komashko,[...]. Nat Neurosci 2018
143
6

A histone acetylome-wide association study of Alzheimer's disease identifies disease-associated H3K27ac differences in the entorhinal cortex.
Sarah J Marzi, Szi Kay Leung, Teodora Ribarska, Eilis Hannon, Adam R Smith, Ehsan Pishva, Jeremie Poschmann, Karen Moore, Claire Troakes, Safa Al-Sarraj,[...]. Nat Neurosci 2018
49
12

Genome-wide DNA methylation profiling in the superior temporal gyrus reveals epigenetic signatures associated with Alzheimer's disease.
Corey T Watson, Panos Roussos, Paras Garg, Daniel J Ho, Nidha Azam, Pavel L Katsel, Vahram Haroutunian, Andrew J Sharp. Genome Med 2016
89
6

Neuroinflammation in Alzheimer's disease.
Michael T Heneka, Monica J Carson, Joseph El Khoury, Gary E Landreth, Frederic Brosseron, Douglas L Feinstein, Andreas H Jacobs, Tony Wyss-Coray, Javier Vitorica, Richard M Ransohoff,[...]. Lancet Neurol 2015
6

Tet2 Rescues Age-Related Regenerative Decline and Enhances Cognitive Function in the Adult Mouse Brain.
Geraldine Gontier, Manasi Iyer, Jeremy M Shea, Gregor Bieri, Elizabeth G Wheatley, Miguel Ramalho-Santos, Saul A Villeda. Cell Rep 2018
61
9

Aging and neurodegeneration are associated with increased mutations in single human neurons.
Michael A Lodato, Rachel E Rodin, Craig L Bohrson, Michael E Coulter, Alison R Barton, Minseok Kwon, Maxwell A Sherman, Carl M Vitzthum, Lovelace J Luquette, Chandri N Yandava,[...]. Science 2018
190
5

Recovery of learning and memory is associated with chromatin remodelling.
Andre Fischer, Farahnaz Sananbenesi, Xinyu Wang, Matthew Dobbin, Li-Huei Tsai. Nature 2007
803
5

Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex.
Chongyuan Luo, Christopher L Keown, Laurie Kurihara, Jingtian Zhou, Yupeng He, Junhao Li, Rosa Castanon, Jacinta Lucero, Joseph R Nery, Justin P Sandoval,[...]. Science 2017
179
5

Beta-secretase cleavage of Alzheimer's amyloid precursor protein by the transmembrane aspartic protease BACE.
R Vassar, B D Bennett, S Babu-Khan, S Kahn, E A Mendiaz, P Denis, D B Teplow, S Ross, P Amarante, R Loeloff,[...]. Science 1999
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.