A citation-based method for searching scientific literature

Xiaojuan Xu, Mengmeng Guo, Na Zhang, Shoudong Ye. Am J Physiol Cell Physiol 2018
Times Cited: 5







List of co-cited articles
26 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56.
Abhinav K Jain, Yuanxin Xi, Ryan McCarthy, Kendra Allton, Kadir C Akdemir, Lalit R Patel, Bruce Aronow, Chunru Lin, Wei Li, Liuqing Yang,[...]. Mol Cell 2016
81
60

DIGIT Is a Conserved Long Noncoding RNA that Regulates GSC Expression to Control Definitive Endoderm Differentiation of Embryonic Stem Cells.
Kaveh Daneshvar, Joshua V Pondick, Byeong-Moo Kim, Chan Zhou, Samuel R York, Jillian A Macklin, Ameed Abualteen, Bo Tan, Alla A Sigova, Chelsea Marcho,[...]. Cell Rep 2016
30
60

lincRNAs act in the circuitry controlling pluripotency and differentiation.
Mitchell Guttman, Julie Donaghey, Bryce W Carey, Manuel Garber, Jennifer K Grenier, Glen Munson, Geneva Young, Anne Bergstrom Lucas, Robert Ach, Laurakay Bruhn,[...]. Nature 2011
60

An evolutionarily conserved long noncoding RNA TUNA controls pluripotency and neural lineage commitment.
Nianwei Lin, Kung-Yen Chang, Zhonghan Li, Keith Gates, Zacharia A Rana, Jason Dang, Danhua Zhang, Tianxu Han, Chao-Shun Yang, Thomas J Cunningham,[...]. Mol Cell 2014
249
60


Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Moran N Cabili, Cole Trapnell, Loyal Goff, Magdalena Koziol, Barbara Tazon-Vega, Aviv Regev, John L Rinn. Genes Dev 2011
40

Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells.
Sabine Loewer, Moran N Cabili, Mitchell Guttman, Yuin-Han Loh, Kelly Thomas, In Hyun Park, Manuel Garber, Matthew Curran, Tamer Onder, Suneet Agarwal,[...]. Nat Genet 2010
676
40

The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells.
Alexander D Ramos, Rebecca E Andersen, Siyuan John Liu, Tomasz Jan Nowakowski, Sung Jun Hong, Caitlyn Gertz, Ryan D Salinas, Hosniya Zarabi, Arnold R Kriegstein, Daniel A Lim. Cell Stem Cell 2015
196
40


Molecular mechanisms of long noncoding RNAs.
Kevin C Wang, Howard Y Chang. Mol Cell 2011
40

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.
Kevin C Wang, Yul W Yang, Bo Liu, Amartya Sanyal, Ryan Corces-Zimmerman, Yong Chen, Bryan R Lajoie, Angeline Protacio, Ryan A Flynn, Rajnish A Gupta,[...]. Nature 2011
40

Long non-coding RNA GAS5 controls human embryonic stem cell self-renewal by maintaining NODAL signalling.
Chen Xu, Yan Zhang, Qiaoling Wang, Zhenyu Xu, Junfeng Jiang, Yuping Gao, Minzhi Gao, Jiuhong Kang, Minjuan Wu, Jun Xiong,[...]. Nat Commun 2016
57
40

Divergent lncRNAs Regulate Gene Expression and Lineage Differentiation in Pluripotent Cells.
Sai Luo, J Yuyang Lu, Lichao Liu, Yafei Yin, Chunyan Chen, Xue Han, Bohou Wu, Ronggang Xu, Wei Liu, Pixi Yan,[...]. Cell Stem Cell 2016
210
40

Long Noncoding RNA NEAT1, Regulated by the EGFR Pathway, Contributes to Glioblastoma Progression Through the WNT/β-Catenin Pathway by Scaffolding EZH2.
Qun Chen, Jinquan Cai, Qixue Wang, Yunfei Wang, Mingyang Liu, Jingxuan Yang, Junhu Zhou, Chunsheng Kang, Min Li, Chuanlu Jiang. Clin Cancer Res 2018
159
40

The long non-coding RNA Dali is an epigenetic regulator of neural differentiation.
Vladislava Chalei, Stephen N Sansom, Lesheng Kong, Sheena Lee, Juan F Montiel, Keith W Vance, Chris P Ponting. Elife 2014
95
40

The transcriptional landscape of the mammalian genome.
P Carninci, T Kasukawa, S Katayama, J Gough, M C Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells,[...]. Science 2005
40

Braveheart, a long noncoding RNA required for cardiovascular lineage commitment.
Carla A Klattenhoff, Johanna C Scheuermann, Lauren E Surface, Robert K Bradley, Paul A Fields, Matthew L Steinhauser, Huiming Ding, Vincent L Butty, Lillian Torrey, Simon Haas,[...]. Cell 2013
610
40

Evf2 (Dlx6as) lncRNA regulates ultraconserved enhancer methylation and the differential transcriptional control of adjacent genes.
Emily G Berghoff, Mary F Clark, Sean Chen, Ivelisse Cajigas, David E Leib, Jhumku D Kohtz. Development 2013
100
40

The Long Noncoding RNA Lncenc1 Maintains Naive States of Mouse ESCs by Promoting the Glycolysis Pathway.
Zihao Sun, Minzhe Zhu, Pin Lv, Lu Cheng, Qianfeng Wang, Pengxiang Tian, Zixiang Yan, Bo Wen. Stem Cell Reports 2018
17
40

Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells.
Jameelah Sheik Mohamed, Philip Michael Gaughwin, Bing Lim, Paul Robson, Leonard Lipovich. RNA 2010
240
40

Essential role of lncRNA binding for WDR5 maintenance of active chromatin and embryonic stem cell pluripotency.
Yul W Yang, Ryan A Flynn, Yong Chen, Kun Qu, Bingbing Wan, Kevin C Wang, Ming Lei, Howard Y Chang. Elife 2014
123
40

Conserved non-coding elements: developmental gene regulation meets genome organization.
Dimitris Polychronopoulos, James W D King, Alexander J Nash, Ge Tan, Boris Lenhard. Nucleic Acids Res 2017
38
40

Genome regulation by long noncoding RNAs.
John L Rinn, Howard Y Chang. Annu Rev Biochem 2012
40



Formation of telomeric repeat-containing RNA (TERRA) foci in highly proliferating mouse cerebellar neuronal progenitors and medulloblastoma.
Zhong Deng, Zhuo Wang, Chaomei Xiang, Aliah Molczan, Valérie Baubet, Jose Conejo-Garcia, Xiaowei Xu, Paul M Lieberman, Nadia Dahmane. J Cell Sci 2012
47
40


Ultraconserved regions encoding ncRNAs are altered in human leukemias and carcinomas.
George A Calin, Chang-gong Liu, Manuela Ferracin, Terry Hyslop, Riccardo Spizzo, Cinzia Sevignani, Muller Fabbri, Amelia Cimmino, Eun Joo Lee, Sylwia E Wojcik,[...]. Cancer Cell 2007
508
20

Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network.
Yen-Sin Ang, Su-Yi Tsai, Dung-Fang Lee, Jonathan Monk, Jie Su, Kajan Ratnakumar, Junjun Ding, Yongchao Ge, Henia Darr, Betty Chang,[...]. Cell 2011
389
20


MicroRNAs and noncoding RNAs in hematological malignancies: molecular, clinical and therapeutic implications.
M Fabbri, R Garzon, M Andreeff, H M Kantarjian, G Garcia-Manero, G A Calin. Leukemia 2008
113
20

Aberrant silencing of imprinted genes on chromosome 12qF1 in mouse induced pluripotent stem cells.
Matthias Stadtfeld, Effie Apostolou, Hidenori Akutsu, Atsushi Fukuda, Patricia Follett, Sridaran Natesan, Tomohiro Kono, Toshi Shioda, Konrad Hochedlinger. Nature 2010
576
20

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.
Marcel E Dinger, Paulo P Amaral, Tim R Mercer, Ken C Pang, Stephen J Bruce, Brooke B Gardiner, Marjan E Askarian-Amiri, Kelin Ru, Giulia Soldà, Cas Simons,[...]. Genome Res 2008
554
20

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
20

Control of developmental regulators by Polycomb in human embryonic stem cells.
Tong Ihn Lee, Richard G Jenner, Laurie A Boyer, Matthew G Guenther, Stuart S Levine, Roshan M Kumar, Brett Chevalier, Sarah E Johnstone, Megan F Cole, Kyo-ichi Isono,[...]. Cell 2006
20

Role of miRNA-9 in Brain Development.
Balachandar Radhakrishnan, A Alwin Prem Anand. J Exp Neurosci 2016
44
20

LncRNAs in Stem Cells.
Shanshan Hu, Ge Shan. Stem Cells Int 2016
27
20

WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development.
Joanna Wysocka, Tomek Swigut, Thomas A Milne, Yali Dou, Xin Zhang, Alma L Burlingame, Robert G Roeder, Ali H Brivanlou, C David Allis. Cell 2005
598
20

Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo.
Alexander D Ramos, Aaron Diaz, Abhinav Nellore, Ryan N Delgado, Ki-Youb Park, Gabriel Gonzales-Roybal, Michael C Oldham, Jun S Song, Daniel A Lim. Cell Stem Cell 2013
171
20

The evolution of ultraconserved elements with different phylogenetic origins.
Taewoo Ryu, Loqmane Seridi, Timothy Ravasi. BMC Evol Biol 2012
14
20

Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.
Andranik Ivanov, Sebastian Memczak, Emanuel Wyler, Francesca Torti, Hagit T Porath, Marta R Orejuela, Michael Piechotta, Erez Y Levanon, Markus Landthaler, Christoph Dieterich,[...]. Cell Rep 2015
515
20

The multilayered complexity of ceRNA crosstalk and competition.
Yvonne Tay, John Rinn, Pier Paolo Pandolfi. Nature 2014
20

Long non-coding RNAs in stem cell pluripotency.
Shi-Yan Ng, Lawrence W Stanton. Wiley Interdiscip Rev RNA 2013
24
20

The transcribed-ultraconserved regions in prostate and gastric cancer: DNA hypermethylation and microRNA-associated regulation.
K Goto, S Ishikawa, R Honma, K Tanimoto, N Sakamoto, K Sentani, N Oue, J Teishima, A Matsubara, W Yasui. Oncogene 2016
22
20

The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator.
Jianchi Feng, Chunming Bi, Brian S Clark, Rina Mady, Palak Shah, Jhumku D Kohtz. Genes Dev 2006
504
20

Epigenetic silencing of Oct4 by a complex containing SUV39H1 and Oct4 pseudogene lncRNA.
Michele Scarola, Elisa Comisso, Rhena Pascolo, Riccardo Chiaradia, Rosa Maria Marion, Claudio Schneider, Maria A Blasco, Stefan Schoeftner, Roberta Benetti. Nat Commun 2015
61
20

Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells.
Alla A Sigova, Alan C Mullen, Benoit Molinie, Sumeet Gupta, David A Orlando, Matthew G Guenther, Albert E Almada, Charles Lin, Phillip A Sharp, Cosmas C Giallourakis,[...]. Proc Natl Acad Sci U S A 2013
302
20

Promiscuous RNA binding by Polycomb repressive complex 2.
Chen Davidovich, Leon Zheng, Karen J Goodrich, Thomas R Cech. Nat Struct Mol Biol 2013
299
20

A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
Bradley E Bernstein, Tarjei S Mikkelsen, Xiaohui Xie, Michael Kamal, Dana J Huebert, James Cuff, Ben Fry, Alex Meissner, Marius Wernig, Kathrin Plath,[...]. Cell 2006
20

A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
Leonardo Salmena, Laura Poliseno, Yvonne Tay, Lev Kats, Pier Paolo Pandolfi. Cell 2011
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.