A citation-based method for searching scientific literature

Thomas S B Schmidt, Jeroen Raes, Peer Bork. Cell 2018
Times Cited: 248







List of co-cited articles
746 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DADA2: High-resolution sample inference from Illumina amplicon data.
Benjamin J Callahan, Paul J McMurdie, Michael J Rosen, Andrew W Han, Amy Jo A Johnson, Susan P Holmes. Nat Methods 2016
14

The Human Intestinal Microbiome in Health and Disease.
Susan V Lynch, Oluf Pedersen. N Engl J Med 2016
14

Diet rapidly and reproducibly alters the human gut microbiome.
Lawrence A David, Corinne F Maurice, Rachel N Carmody, David B Gootenberg, Julie E Button, Benjamin E Wolfe, Alisha V Ling, A Sloan Devlin, Yug Varma, Michael A Fischbach,[...]. Nature 2014
13

Extensive impact of non-antibiotic drugs on human gut bacteria.
Lisa Maier, Mihaela Pruteanu, Michael Kuhn, Georg Zeller, Anja Telzerow, Exene Erin Anderson, Ana Rita Brochado, Keith Conrad Fernandez, Hitomi Dose, Hirotada Mori,[...]. Nature 2018
651
12

Human gut microbiome viewed across age and geography.
Tanya Yatsunenko, Federico E Rey, Mark J Manary, Indi Trehan, Maria Gloria Dominguez-Bello, Monica Contreras, Magda Magris, Glida Hidalgo, Robert N Baldassano, Andrey P Anokhin,[...]. Nature 2012
12

A human gut microbial gene catalogue established by metagenomic sequencing.
Junjie Qin, Ruiqiang Li, Jeroen Raes, Manimozhiyan Arumugam, Kristoffer Solvsten Burgdorf, Chaysavanh Manichanh, Trine Nielsen, Nicolas Pons, Florence Levenez, Takuji Yamada,[...]. Nature 2010
11

Host-gut microbiota metabolic interactions.
Jeremy K Nicholson, Elaine Holmes, James Kinross, Remy Burcelin, Glenn Gibson, Wei Jia, Sven Pettersson. Science 2012
11

Role of the microbiota in immunity and inflammation.
Yasmine Belkaid, Timothy W Hand. Cell 2014
11


Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors.
Bertrand Routy, Emmanuelle Le Chatelier, Lisa Derosa, Connie P M Duong, Maryam Tidjani Alou, Romain Daillère, Aurélie Fluckiger, Meriem Messaoudene, Conrad Rauber, Maria P Roberti,[...]. Science 2018
10

A metagenome-wide association study of gut microbiota in type 2 diabetes.
Junjie Qin, Yingrui Li, Zhiming Cai, Shenghui Li, Jianfeng Zhu, Fan Zhang, Suisha Liang, Wenwei Zhang, Yuanlin Guan, Dongqian Shen,[...]. Nature 2012
9

From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites.
Ara Koh, Filipe De Vadder, Petia Kovatcheva-Datchary, Fredrik Bäckhed. Cell 2016
9

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
9

Population-level analysis of gut microbiome variation.
Gwen Falony, Marie Joossens, Sara Vieira-Silva, Jun Wang, Youssef Darzi, Karoline Faust, Alexander Kurilshikov, Marc Jan Bonder, Mireia Valles-Colomer, Doris Vandeputte,[...]. Science 2016
881
8

Enterotypes of the human gut microbiome.
Manimozhiyan Arumugam, Jeroen Raes, Eric Pelletier, Denis Le Paslier, Takuji Yamada, Daniel R Mende, Gabriel R Fernandes, Julien Tap, Thomas Bruls, Jean-Michel Batto,[...]. Nature 2011
8

Environment dominates over host genetics in shaping human gut microbiota.
Daphna Rothschild, Omer Weissbrod, Elad Barkan, Alexander Kurilshikov, Tal Korem, David Zeevi, Paul I Costea, Anastasia Godneva, Iris N Kalka, Noam Bar,[...]. Nature 2018
850
8


Diversity, stability and resilience of the human gut microbiota.
Catherine A Lozupone, Jesse I Stombaugh, Jeffrey I Gordon, Janet K Jansson, Rob Knight. Nature 2012
8

Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy.
Ayelet Sivan, Leticia Corrales, Nathaniel Hubert, Jason B Williams, Keston Aquino-Michaels, Zachary M Earley, Franco W Benyamin, Yuk Man Lei, Bana Jabri, Maria-Luisa Alegre,[...]. Science 2015
8

The commensal microbiome is associated with anti-PD-1 efficacy in metastatic melanoma patients.
Vyara Matson, Jessica Fessler, Riyue Bao, Tara Chongsuwat, Yuanyuan Zha, Maria-Luisa Alegre, Jason J Luke, Thomas F Gajewski. Science 2018
957
8

Metagenomic biomarker discovery and explanation.
Nicola Segata, Jacques Izard, Levi Waldron, Dirk Gevers, Larisa Miropolsky, Wendy S Garrett, Curtis Huttenhower. Genome Biol 2011
8

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses.
Claire Duvallet, Sean M Gibbons, Thomas Gurry, Rafael A Irizarry, Eric J Alm. Nat Commun 2017
327
7

QIIME allows analysis of high-throughput community sequencing data.
J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D Bushman, Elizabeth K Costello, Noah Fierer, Antonio Gonzalez Peña, Julia K Goodrich, Jeffrey I Gordon,[...]. Nat Methods 2010
7

The human microbiome project.
Peter J Turnbaugh, Ruth E Ley, Micah Hamady, Claire M Fraser-Liggett, Rob Knight, Jeffrey I Gordon. Nature 2007
7


Culturing the human microbiota and culturomics.
Jean-Christophe Lagier, Grégory Dubourg, Matthieu Million, Frédéric Cadoret, Melhem Bilen, Florence Fenollar, Anthony Levasseur, Jean-Marc Rolain, Pierre-Edouard Fournier, Didier Raoult. Nat Rev Microbiol 2018
220
7

Current understanding of the human microbiome.
Jack A Gilbert, Martin J Blaser, J Gregory Caporaso, Janet K Jansson, Susan V Lynch, Rob Knight. Nat Med 2018
556
7

Gut microbiome modulates response to anti-PD-1 immunotherapy in melanoma patients.
V Gopalakrishnan, C N Spencer, L Nezi, A Reuben, M C Andrews, T V Karpinets, P A Prieto, D Vicente, K Hoffman, S C Wei,[...]. Science 2018
7

A core gut microbiome in obese and lean twins.
Peter J Turnbaugh, Micah Hamady, Tanya Yatsunenko, Brandi L Cantarel, Alexis Duncan, Ruth E Ley, Mitchell L Sogin, William J Jones, Bruce A Roe, Jason P Affourtit,[...]. Nature 2009
6

The microbiome and innate immunity.
Christoph A Thaiss, Niv Zmora, Maayan Levy, Eran Elinav. Nature 2016
726
6

Induction of intestinal Th17 cells by segmented filamentous bacteria.
Ivaylo I Ivanov, Koji Atarashi, Nicolas Manel, Eoin L Brodie, Tatsuichiro Shima, Ulas Karaoz, Dongguang Wei, Katherine C Goldfarb, Clark A Santee, Susan V Lynch,[...]. Cell 2009
6

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa.
Carlotta De Filippo, Duccio Cavalieri, Monica Di Paola, Matteo Ramazzotti, Jean Baptiste Poullet, Sebastien Massart, Silvia Collini, Giuseppe Pieraccini, Paolo Lionetti. Proc Natl Acad Sci U S A 2010
6

Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes.
Erick Riquelme, Yu Zhang, Liangliang Zhang, Maria Montiel, Michelle Zoltan, Wenli Dong, Pompeyo Quesada, Ismet Sahin, Vidhi Chandra, Anthony San Lucas,[...]. Cell 2019
287
6

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric J Alm, Manimozhiyan Arumugam, Francesco Asnicar,[...]. Nat Biotechnol 2019
6

Anticancer immunotherapy by CTLA-4 blockade relies on the gut microbiota.
Marie Vétizou, Jonathan M Pitt, Romain Daillère, Patricia Lepage, Nadine Waldschmitt, Caroline Flament, Sylvie Rusakiewicz, Bertrand Routy, Maria P Roberti, Connie P M Duong,[...]. Science 2015
6

Dysbiosis and the immune system.
Maayan Levy, Aleksandra A Kolodziejczyk, Christoph A Thaiss, Eran Elinav. Nat Rev Immunol 2017
473
5

Gut metagenome in European women with normal, impaired and diabetic glucose control.
Fredrik H Karlsson, Valentina Tremaroli, Intawat Nookaew, Göran Bergström, Carl Johan Behre, Björn Fagerberg, Jens Nielsen, Fredrik Bäckhed. Nature 2013
5

Quantitative microbiome profiling links gut community variation to microbial load.
Doris Vandeputte, Gunter Kathagen, Kevin D'hoe, Sara Vieira-Silva, Mireia Valles-Colomer, João Sabino, Jun Wang, Raul Y Tito, Lindsey De Commer, Youssef Darzi,[...]. Nature 2017
343
5

Microbial ecology: human gut microbes associated with obesity.
Ruth E Ley, Peter J Turnbaugh, Samuel Klein, Jeffrey I Gordon. Nature 2006
5


Tryptophan catabolites from microbiota engage aryl hydrocarbon receptor and balance mucosal reactivity via interleukin-22.
Teresa Zelante, Rossana G Iannitti, Cristina Cunha, Antonella De Luca, Gloria Giovannini, Giuseppe Pieraccini, Riccardo Zecchi, Carmen D'Angelo, Cristina Massi-Benedetti, Francesca Fallarino,[...]. Immunity 2013
956
5

Interactions between the microbiota and the immune system.
Lora V Hooper, Dan R Littman, Andrew J Macpherson. Science 2012
5

Gut microbiome structure and metabolic activity in inflammatory bowel disease.
Eric A Franzosa, Alexandra Sirota-Madi, Julian Avila-Pacheco, Nadine Fornelos, Henry J Haiser, Stefan Reinker, Tommi Vatanen, A Brantley Hall, Himel Mallick, Lauren J McIver,[...]. Nat Microbiol 2019
341
5

The neuroactive potential of the human gut microbiota in quality of life and depression.
Mireia Valles-Colomer, Gwen Falony, Youssef Darzi, Ettje F Tigchelaar, Jun Wang, Raul Y Tito, Carmen Schiweck, Alexander Kurilshikov, Marie Joossens, Cisca Wijmenga,[...]. Nat Microbiol 2019
457
5

Gut microbiota dysbiosis contributes to the development of hypertension.
Jing Li, Fangqing Zhao, Yidan Wang, Junru Chen, Jie Tao, Gang Tian, Shouling Wu, Wenbin Liu, Qinghua Cui, Bin Geng,[...]. Microbiome 2017
513
5


Diet-induced extinctions in the gut microbiota compound over generations.
Erica D Sonnenburg, Samuel A Smits, Mikhail Tikhonov, Steven K Higginbottom, Ned S Wingreen, Justin L Sonnenburg. Nature 2016
701
5

Enterotypes in the landscape of gut microbial community composition.
Paul I Costea, Falk Hildebrand, Manimozhiyan Arumugam, Fredrik Bäckhed, Martin J Blaser, Frederic D Bushman, Willem M de Vos, S Dusko Ehrlich, Claire M Fraser, Masahira Hattori,[...]. Nat Microbiol 2018
300
5

Linking long-term dietary patterns with gut microbial enterotypes.
Gary D Wu, Jun Chen, Christian Hoffmann, Kyle Bittinger, Ying-Yu Chen, Sue A Keilbaugh, Meenakshi Bewtra, Dan Knights, William A Walters, Rob Knight,[...]. Science 2011
5

The gut flora as a forgotten organ.
Ann M O'Hara, Fergus Shanahan. EMBO Rep 2006
5


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.