A citation-based method for searching scientific literature

Daniel J Dennis, Sisu Han, Carol Schuurmans. Brain Res 2019
Times Cited: 54







List of co-cited articles
355 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Proneural genes and the specification of neural cell types.
Nicolas Bertrand, Diogo S Castro, François Guillemot. Nat Rev Neurosci 2002
20

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
18

A role for neural determination genes in specifying the dorsoventral identity of telencephalic neurons.
C Fode, Q Ma, S Casarosa, S L Ang, D J Anderson, F Guillemot. Genes Dev 2000
461
12

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
Jason D Buenrostro, Paul G Giresi, Lisa C Zaba, Howard Y Chang, William J Greenleaf. Nat Methods 2013
12

Proneural bHLH genes in development and disease.
Carol Huang, Jennifer A Chan, Carol Schuurmans. Curr Top Dev Biol 2014
41
14

Sequential phases of cortical specification involve Neurogenin-dependent and -independent pathways.
Carol Schuurmans, Olivier Armant, Marta Nieto, Jan M Stenman, Olivier Britz, Natalia Klenin, Craig Brown, Lisa-Marie Langevin, Julie Seibt, Hua Tang,[...]. EMBO J 2004
284
11

A role for proneural genes in the maturation of cortical progenitor cells.
Olivier Britz, Pierre Mattar, Laurent Nguyen, Lisa-Marie Langevin, Céline Zimmer, Sharmila Alam, François Guillemot, Carol Schuurmans. Cereb Cortex 2006
117
11

NeuroD1 reprograms chromatin and transcription factor landscapes to induce the neuronal program.
Abhijeet Pataskar, Johannes Jung, Pawel Smialowski, Florian Noack, Federico Calegari, Tobias Straub, Vijay K Tiwari. EMBO J 2016
100
11

Mash1 regulates neurogenesis in the ventral telencephalon.
S Casarosa, C Fode, F Guillemot. Development 1999
474
11

Proneural genes in neocortical development.
G Wilkinson, D Dennis, C Schuurmans. Neuroscience 2013
80
9

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
9

Neurog2 controls the leading edge of neurogenesis in the mammalian retina.
Robert B Hufnagel, Tien T Le, Ashley L Riesenberg, Nadean L Brown. Dev Biol 2010
67
9

Expression pattern of the transcription factor Olig2 in response to brain injuries: implications for neuronal repair.
Annalisa Buffo, Milan R Vosko, Dilek Ertürk, Gerhard F Hamann, Mathias Jucker, David Rowitch, Magdalena Götz. Proc Natl Acad Sci U S A 2005
277
9


Cell cycle-regulated multi-site phosphorylation of Neurogenin 2 coordinates cell cycling with differentiation during neurogenesis.
Fahad Ali, Chris Hindley, Gary McDowell, Richard Deibler, Alison Jones, Marc Kirschner, Francois Guillemot, Anna Philpott. Development 2011
112
7


Neurogenin promotes neurogenesis and inhibits glial differentiation by independent mechanisms.
Y Sun, M Nadal-Vicens, S Misono, M Z Lin, A Zubiaga, X Hua, G Fan, M E Greenberg. Cell 2001
576
7

Basic helix-loop-helix transcription factors cooperate to specify a cortical projection neuron identity.
Pierre Mattar, Lisa Marie Langevin, Kathryn Markham, Natalia Klenin, Salma Shivji, Dawn Zinyk, Carol Schuurmans. Mol Cell Biol 2008
68
7

Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.
Begüm Aydin, Akshay Kakumanu, Mary Rossillo, Mireia Moreno-Estellés, Görkem Garipler, Niels Ringstad, Nuria Flames, Shaun Mahony, Esteban O Mazzoni. Nat Neurosci 2019
22
18

Basic helix-loop-helix factors in cortical development.
Sarah E Ross, Michael E Greenberg, Charles D Stiles. Neuron 2003
463
7

Neuronal basic helix-loop-helix proteins (NEX and BETA2/Neuro D) regulate terminal granule cell differentiation in the hippocampus.
M H Schwab, A Bartholomae, B Heimrich, D Feldmeyer, S Druffel-Augustin, S Goebbels, F J Naya, S Zhao, M Frotscher, M J Tsai,[...]. J Neurosci 2000
181
7


Induction of human neuronal cells by defined transcription factors.
Zhiping P Pang, Nan Yang, Thomas Vierbuchen, Austin Ostermeier, Daniel R Fuentes, Troy Q Yang, Ami Citri, Vittorio Sebastiano, Samuele Marro, Thomas C Südhof,[...]. Nature 2011
779
7


Direct conversion of fibroblasts to functional neurons by defined factors.
Thomas Vierbuchen, Austin Ostermeier, Zhiping P Pang, Yuko Kokubu, Thomas C Südhof, Marius Wernig. Nature 2010
7

Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Michael K Skinner, Alan Rawls, Jeanne Wilson-Rawls, Eric H Roalson. Differentiation 2010
56
7


Ptf1a, a bHLH transcriptional gene, defines GABAergic neuronal fates in cerebellum.
Mikio Hoshino, Shoko Nakamura, Kiyoshi Mori, Takeshi Kawauchi, Mami Terao, Yoshiaki V Nishimura, Akihisa Fukuda, Toshimitsu Fuse, Naoki Matsuo, Masaki Sone,[...]. Neuron 2005
319
7

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
7

clusterProfiler: an R package for comparing biological themes among gene clusters.
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. OMICS 2012
7


Conversion of Xenopus ectoderm into neurons by NeuroD, a basic helix-loop-helix protein.
J E Lee, S M Hollenberg, L Snider, D L Turner, N Lipnick, H Weintraub. Science 1995
898
7

Requirement of multiple basic helix-loop-helix genes for retinal neuronal subtype specification.
Tadamichi Akagi, Tomoyuki Inoue, Goichi Miyoshi, Yasumasa Bessho, Masayo Takahashi, Jacqueline E Lee, François Guillemot, Ryoichiro Kageyama. J Biol Chem 2004
105
7

Neurog2 and Ascl1 together regulate a postmitotic derepression circuit to govern laminar fate specification in the murine neocortex.
Daniel J Dennis, Grey Wilkinson, Saiqun Li, Rajiv Dixit, Lata Adnani, Anjali Balakrishnan, Sisu Han, Christopher Kovach, Nicole Gruenig, Deborah M Kurrasch,[...]. Proc Natl Acad Sci U S A 2017
21
19

Neuronal basic helix-loop-helix proteins Neurod2/6 regulate cortical commissure formation before midline interactions.
Ingo Bormuth, Kuo Yan, Tomoko Yonemasu, Maike Gummert, Mingyue Zhang, Sven Wichert, Olga Grishina, Alexander Pieper, Weiqi Zhang, Sandra Goebbels,[...]. J Neurosci 2013
39
10


Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons.
Orly L Wapinski, Thomas Vierbuchen, Kun Qu, Qian Yi Lee, Soham Chanda, Daniel R Fuentes, Paul G Giresi, Yi Han Ng, Samuele Marro, Norma F Neff,[...]. Cell 2013
330
7

Identification and Successful Negotiation of a Metabolic Checkpoint in Direct Neuronal Reprogramming.
Sergio Gascón, Elisa Murenu, Giacomo Masserdotti, Felipe Ortega, Gianluca L Russo, David Petrik, Aditi Deshpande, Christophe Heinrich, Marisa Karow, Stephen P Robertson,[...]. Cell Stem Cell 2016
159
7

Neurogenin and NeuroD direct transcriptional targets and their regulatory enhancers.
Seongjin Seo, Jong-Won Lim, Dhananjay Yellajoshyula, Li-Wei Chang, Kristen L Kroll. EMBO J 2007
145
7

ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.
Jason D Buenrostro, Beijing Wu, Howard Y Chang, William J Greenleaf. Curr Protoc Mol Biol 2015
961
7




Hes1 and Hes5 as notch effectors in mammalian neuronal differentiation.
T Ohtsuka, M Ishibashi, G Gradwohl, S Nakanishi, F Guillemot, R Kageyama. EMBO J 1999
622
5

The glial nature of embryonic and adult neural stem cells.
Arnold Kriegstein, Arturo Alvarez-Buylla. Annu Rev Neurosci 2009
5

REST and its corepressors mediate plasticity of neuronal gene chromatin throughout neurogenesis.
Nurit Ballas, Christopher Grunseich, Diane D Lu, Joan C Speh, Gail Mandel. Cell 2005
640
5

Neurog2 simultaneously activates and represses alternative gene expression programs in the developing neocortex.
Christopher Kovach, Rajiv Dixit, Saiqun Li, Pierre Mattar, Grey Wilkinson, Gina E Elsen, Deborah M Kurrasch, Robert F Hevner, Carol Schuurmans. Cereb Cortex 2013
29
10

Neurod1 is essential for the survival and maturation of adult-born neurons.
Zhengliang Gao, Kerstin Ure, Jessica L Ables, Diane C Lagace, Klaus-Armin Nave, Sandra Goebbels, Amelia J Eisch, Jenny Hsieh. Nat Neurosci 2009
266
5

Molecular mechanisms of epithelial-mesenchymal transition.
Samy Lamouille, Jian Xu, Rik Derynck. Nat Rev Mol Cell Biol 2014
5



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.