A citation-based method for searching scientific literature

Rajiv K Khajuria, Mathias Munschauer, Jacob C Ulirsch, Claudia Fiorini, Leif S Ludwig, Sean K McFarland, Nour J Abdulhay, Harrison Specht, Hasmik Keshishian, D R Mani, Marko Jovanovic, Steven R Ellis, Charles P Fulco, Jesse M Engreitz, Sabina Schütz, John Lian, Karen W Gripp, Olga K Weinberg, Geraldine S Pinkus, Lee Gehrke, Aviv Regev, Eric S Lander, Hanna T Gazda, Winston Y Lee, Vikram G Panse, Steven A Carr, Vijay G Sankaran. Cell 2018
Times Cited: 173







List of co-cited articles
1114 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ribosomopathies: There's strength in numbers.
Eric W Mills, Rachel Green. Science 2017
201
33

Altered translation of GATA1 in Diamond-Blackfan anemia.
Leif S Ludwig, Hanna T Gazda, Jennifer C Eng, Stephen W Eichhorn, Prathapan Thiru, Roxanne Ghazvinian, Tracy I George, Jason R Gotlib, Alan H Beggs, Colin A Sieff,[...]. Nat Med 2014
180
33

Haematopoietic stem cells require a highly regulated protein synthesis rate.
Robert A J Signer, Jeffrey A Magee, Adrian Salic, Sean J Morrison. Nature 2014
341
21

The Genetic Landscape of Diamond-Blackfan Anemia.
Jacob C Ulirsch, Jeffrey M Verboon, Shideh Kazerounian, Michael H Guo, Daniel Yuan, Leif S Ludwig, Robert E Handsaker, Nour J Abdulhay, Claudia Fiorini, Giulio Genovese,[...]. Am J Hum Genet 2018
103
19

Heterogeneous Ribosomes Preferentially Translate Distinct Subpools of mRNAs Genome-wide.
Zhen Shi, Kotaro Fujii, Kyle M Kovary, Naomi R Genuth, Hannes L Röst, Mary N Teruel, Maria Barna. Mol Cell 2017
279
17

Ribosomopathies: human disorders of ribosome dysfunction.
Anupama Narla, Benjamin L Ebert. Blood 2010
508
16

Exome sequencing identifies GATA1 mutations resulting in Diamond-Blackfan anemia.
Vijay G Sankaran, Roxanne Ghazvinian, Ron Do, Prathapan Thiru, Jo-Anne Vergilio, Alan H Beggs, Colin A Sieff, Stuart H Orkin, David G Nathan, Eric S Lander,[...]. J Clin Invest 2012
225
16

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
16

Haploinsufficiency for ribosomal protein genes causes selective activation of p53 in human erythroid progenitor cells.
Shilpee Dutt, Anupama Narla, Katherine Lin, Ann Mullally, Nirmalee Abayasekara, Christine Megerdichian, Frederick H Wilson, Treeve Currie, Arati Khanna-Gupta, Nancy Berliner,[...]. Blood 2011
279
15

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander,[...]. Proc Natl Acad Sci U S A 2005
15

Small and Large Ribosomal Subunit Deficiencies Lead to Distinct Gene Expression Signatures that Reflect Cellular Growth Rate.
Ze Cheng, Christopher Frederick Mugler, Abdurrahman Keskin, Stefanie Hodapp, Leon Yen-Lee Chan, Karsten Weis, Philipp Mertins, Aviv Regev, Marko Jovanovic, Gloria Ann Brar. Mol Cell 2019
50
28

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
14

Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning.
Nadya Kondrashov, Aya Pusic, Craig R Stumpf, Kunihiko Shimizu, Andrew C Hsieh, Junko Ishijima, Toshihiko Shiroishi, Maria Barna. Cell 2011
359
13

The gene encoding ribosomal protein S19 is mutated in Diamond-Blackfan anaemia.
N Draptchinskaia, P Gustavsson, B Andersson, M Pettersson, T N Willig, I Dianzani, S Ball, G Tchernia, J Klar, H Matsson,[...]. Nat Genet 1999
610
12



Rare ribosomopathies: insights into mechanisms of cancer.
Anna Aspesi, Steven R Ellis. Nat Rev Cancer 2019
45
24

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.
Nicholas T Ingolia, Sina Ghaemmaghami, John R S Newman, Jonathan S Weissman. Science 2009
11

Deregulation of ribosomal protein expression and translation promotes breast cancer metastasis.
Richard Y Ebright, Sooncheol Lee, Ben S Wittner, Kira L Niederhoffer, Benjamin T Nicholson, Aditya Bardia, Samuel Truesdell, Devon F Wiley, Benjamin Wesley, Selena Li,[...]. Science 2020
79
13

Ribosomal protein L5 and L11 mutations are associated with cleft palate and abnormal thumbs in Diamond-Blackfan anemia patients.
Hanna T Gazda, Mee Rie Sheen, Adrianna Vlachos, Valerie Choesmel, Marie-Françoise O'Donohue, Hal Schneider, Natasha Darras, Catherine Hasman, Colin A Sieff, Peter E Newburger,[...]. Am J Hum Genet 2008
292
10

Ribosomal deficiencies in Diamond-Blackfan anemia impair translation of transcripts essential for differentiation of murine and human erythroblasts.
Rastislav Horos, Hanna Ijspeert, Dagmar Pospisilova, Regine Sendtner, Charlotte Andrieu-Soler, Erdogan Taskesen, Andrzej Nieradka, Radek Cmejla, Michael Sendtner, Ivo P Touw,[...]. Blood 2012
112
10


Hallmarks of ribosomopathies.
Kim R Kampen, Sergey O Sulima, Stijn Vereecke, Kim De Keersmaecker. Nucleic Acids Res 2020
48
20

Regulation of globin-heme balance in Diamond-Blackfan anemia by HSP70/GATA1.
Sarah Rio, Marc Gastou, Narjesse Karboul, Raphaёl Derman, Thunwarat Suriyun, Hana Manceau, Thierry Leblanc, Jamel El Benna, Caroline Schmitt, Slim Azouzi,[...]. Blood 2019
25
36

MYC as a regulator of ribosome biogenesis and protein synthesis.
Jan van Riggelen, Alper Yetil, Dean W Felsher. Nat Rev Cancer 2010
537
9



The translational landscape of mTOR signalling steers cancer initiation and metastasis.
Andrew C Hsieh, Yi Liu, Merritt P Edlind, Nicholas T Ingolia, Matthew R Janes, Annie Sher, Evan Y Shi, Craig R Stumpf, Carly Christensen, Michael J Bonham,[...]. Nature 2012
834
9

Incidence of neoplasia in Diamond Blackfan anemia: a report from the Diamond Blackfan Anemia Registry.
Adrianna Vlachos, Philip S Rosenberg, Eva Atsidaftos, Blanche P Alter, Jeffrey M Lipton. Blood 2012
187
9

Partial Loss of Rpl11 in Adult Mice Recapitulates Diamond-Blackfan Anemia and Promotes Lymphomagenesis.
Lucia Morgado-Palacin, Gianluca Varetti, Susana Llanos, Gonzalo Gómez-López, Dolores Martinez, Manuel Serrano. Cell Rep 2015
48
16

RNA regulons in Hox 5' UTRs confer ribosome specificity to gene regulation.
Shifeng Xue, Siqi Tian, Kotaro Fujii, Wipapat Kladwang, Rhiju Das, Maria Barna. Nature 2015
186
8

Ribosome assembly coming into focus.
Sebastian Klinge, John L Woolford. Nat Rev Mol Cell Biol 2019
170
8

Rps14 haploinsufficiency causes a block in erythroid differentiation mediated by S100A8 and S100A9.
Rebekka K Schneider, Monica Schenone, Monica Ventura Ferreira, Rafael Kramann, Cailin E Joyce, Christina Hartigan, Fabian Beier, Tim H Brümmendorf, Ulrich Germing, Uwe Platzbecker,[...]. Nat Med 2016
138
8

The Mammalian Ribo-interactome Reveals Ribosome Functional Diversity and Heterogeneity.
Deniz Simsek, Gerald C Tiu, Ryan A Flynn, Gun W Byeon, Kathrin Leppek, Adele F Xu, Howard Y Chang, Maria Barna. Cell 2017
192
8

Coordinated Control of mRNA and rRNA Processing Controls Embryonic Stem Cell Pluripotency and Differentiation.
Nina S Corsini, Angela M Peer, Paul Moeseneder, Mykola Roiuk, Thomas R Burkard, Hans-Christian Theussl, Isabella Moll, Juergen A Knoblich. Cell Stem Cell 2018
30
26

Stem cell function and stress response are controlled by protein synthesis.
Sandra Blanco, Roberto Bandiera, Martyna Popis, Shobbir Hussain, Patrick Lombard, Jelena Aleksic, Abdulrahim Sajini, Hinal Tanna, Rosana Cortés-Garrido, Nikoletta Gkatza,[...]. Nature 2016
215
8

The rate of protein synthesis in hematopoietic stem cells is limited partly by 4E-BPs.
Robert A J Signer, Le Qi, Zhiyu Zhao, David Thompson, Alla A Sigova, Zi Peng Fan, George N DeMartino, Richard A Young, Nahum Sonenberg, Sean J Morrison. Genes Dev 2016
50
16

Ribosomal protein L24 defect in belly spot and tail (Bst), a mouse Minute.
Edward R Oliver, Thomas L Saunders, Susan A Tarlé, Tom Glaser. Development 2004
224
8

Novel and known ribosomal causes of Diamond-Blackfan anaemia identified through comprehensive genomic characterisation.
Lisa Mirabello, Payal P Khincha, Steven R Ellis, Neelam Giri, Seth Brodie, Settara C Chandrasekharappa, Frank X Donovan, Weiyin Zhou, Belynda D Hicks, Joseph F Boland,[...]. J Med Genet 2017
57
14

Structure of the human 80S ribosome.
Heena Khatter, Alexander G Myasnikov, S Kundhavai Natchiar, Bruno P Klaholz. Nature 2015
254
8


A unifying model for mTORC1-mediated regulation of mRNA translation.
Carson C Thoreen, Lynne Chantranupong, Heather R Keys, Tim Wang, Nathanael S Gray, David M Sabatini. Nature 2012
907
8

Control of human hemoglobin switching by LIN28B-mediated regulation of BCL11A translation.
Anindita Basak, Mathias Munschauer, Caleb A Lareau, Kara E Montbleau, Jacob C Ulirsch, Christina R Hartigan, Monica Schenone, John Lian, Yaomei Wang, Yumin Huang,[...]. Nat Genet 2020
37
21

Ribosomopathies: Old Concepts, New Controversies.
Katherine I Farley-Barnes, Lisa M Ogawa, Susan J Baserga. Trends Genet 2019
62
12

Deletion of ribosomal protein genes is a common vulnerability in human cancer, especially in concert with TP53 mutations.
Ram Ajore, David Raiser, Marie McConkey, Magnus Jöud, Bernd Boidol, Brenton Mar, Gordon Saksena, David M Weinstock, Scott Armstrong, Steven R Ellis,[...]. EMBO Mol Med 2017
60
11

A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
343
7


Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells.
Nicola Guzzi, Maciej Cieśla, Phuong Cao Thi Ngoc, Stefan Lang, Sonali Arora, Marios Dimitriou, Kristyna Pimková, Mikael N E Sommarin, Roberto Munita, Michal Lubas,[...]. Cell 2018
173
7

Impaired human hematopoiesis due to a cryptic intronic GATA1 splicing mutation.
Nour J Abdulhay, Claudia Fiorini, Jeffrey M Verboon, Leif S Ludwig, Jacob C Ulirsch, Barbara Zieger, Caleb A Lareau, Xiaoli Mi, Anindita Roy, Esther A Obeng,[...]. J Exp Med 2019
15
46

The ribosomal basis of Diamond-Blackfan Anemia: mutation and database update.
Ilenia Boria, Emanuela Garelli, Hanna T Gazda, Anna Aspesi, Paola Quarello, Elisa Pavesi, Daniela Ferrante, Joerg J Meerpohl, Mutlu Kartal, Lydie Da Costa,[...]. Hum Mutat 2010
155
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.