A citation-based method for searching scientific literature

David P Bartel. Cell 2018
Times Cited: 1131







List of co-cited articles
577 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity




Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
14


Most mammalian mRNAs are conserved targets of microRNAs.
Robin C Friedman, Kyle Kai-How Farh, Christopher B Burge, David P Bartel. Genome Res 2009
11

A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain.
Benjamin Kleaveland, Charlie Y Shi, Joanna Stefano, David P Bartel. Cell 2018
258
10

Regulation of microRNA function in animals.
Luca F R Gebert, Ian J MacRae. Nat Rev Mol Cell Biol 2019
681
9

miRBase: from microRNA sequences to function.
Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones. Nucleic Acids Res 2019
929
9

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
9

miRBase: annotating high confidence microRNAs using deep sequencing data.
Ana Kozomara, Sam Griffiths-Jones. Nucleic Acids Res 2014
9

Towards a molecular understanding of microRNA-mediated gene silencing.
Stefanie Jonas, Elisa Izaurralde. Nat Rev Genet 2015
913
8


Circular RNAs are a large class of animal RNAs with regulatory potency.
Sebastian Memczak, Marvin Jens, Antigoni Elefsinioti, Francesca Torti, Janna Krueger, Agnieszka Rybak, Luisa Maier, Sebastian D Mackowiak, Lea H Gregersen, Mathias Munschauer,[...]. Nature 2013
8

The biochemical basis of microRNA targeting efficacy.
Sean E McGeary, Kathy S Lin, Charlie Y Shi, Thy M Pham, Namita Bisaria, Gina M Kelley, David P Bartel. Science 2019
70
11

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.
Sung Wook Chi, Julie B Zang, Aldo Mele, Robert B Darnell. Nature 2009
8


Endogenous microRNA sponges: evidence and controversy.
Daniel W Thomson, Marcel E Dinger. Nat Rev Genet 2016
883
7


A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome.
Bastian Fromm, Tyler Billipp, Liam E Peck, Morten Johansen, James E Tarver, Benjamin L King, James M Newcomb, Lorenzo F Sempere, Kjersti Flatmark, Eivind Hovig,[...]. Annu Rev Genet 2015
269
7


Pairing beyond the Seed Supports MicroRNA Targeting Specificity.
James P Broughton, Michael T Lovci, Jessica L Huang, Gene W Yeo, Amy E Pasquinelli. Mol Cell 2016
153
7

Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding.
Aleksandra Helwak, Grzegorz Kudla, Tatiana Dudnakova, David Tollervey. Cell 2013
745
6

Impact of MicroRNA Levels, Target-Site Complementarity, and Cooperativity on Competing Endogenous RNA-Regulated Gene Expression.
Rémy Denzler, Sean E McGeary, Alexandra C Title, Vikram Agarwal, David P Bartel, Markus Stoffel. Mol Cell 2016
165
6

Natural RNA circles function as efficient microRNA sponges.
Thomas B Hansen, Trine I Jensen, Bettina H Clausen, Jesper B Bramsen, Bente Finsen, Christian K Damgaard, Jørgen Kjems. Nature 2013
6



The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.
B J Reinhart, F J Slack, M Basson, A E Pasquinelli, J C Bettinger, A E Rougvie, H R Horvitz, G Ruvkun. Nature 2000
6

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
5

Argonaute2 is the catalytic engine of mammalian RNAi.
Jidong Liu, Michelle A Carmell, Fabiola V Rivas, Carolyn G Marsden, J Michael Thomson, Ji-Joon Song, Scott M Hammond, Leemor Joshua-Tor, Gregory J Hannon. Science 2004
5

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.
Markus Hafner, Markus Landthaler, Lukas Burger, Mohsen Khorshid, Jean Hausser, Philipp Berninger, Andrea Rothballer, Manuel Ascano, Anna-Carina Jungkamp, Mathias Munschauer,[...]. Cell 2010
5

MicroRNA targeting specificity in mammals: determinants beyond seed pairing.
Andrew Grimson, Kyle Kai-How Farh, Wendy K Johnston, Philip Garrett-Engele, Lee P Lim, David P Bartel. Mol Cell 2007
5

Distribution of miRNA expression across human tissues.
Nicole Ludwig, Petra Leidinger, Kurt Becker, Christina Backes, Tobias Fehlmann, Christian Pallasch, Steffi Rheinheimer, Benjamin Meder, Cord Stähler, Eckart Meese,[...]. Nucleic Acids Res 2016
457
5

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
5

The Potential for microRNA Therapeutics and Clinical Research.
Johora Hanna, Gazi S Hossain, Jannet Kocerha. Front Genet 2019
227
5

MirGeneDB 2.0: the metazoan microRNA complement.
Bastian Fromm, Diana Domanska, Eirik Høye, Vladimir Ovchinnikov, Wenjing Kang, Ernesto Aparicio-Puerta, Morten Johansen, Kjersti Flatmark, Anthony Mathelier, Eivind Hovig,[...]. Nucleic Acids Res 2020
66
7

Fast and effective prediction of microRNA/target duplexes.
Marc Rehmsmeier, Peter Steffen, Matthias Hochsmann, Robert Giegerich. RNA 2004
5

MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells.
Margaret S Ebert, Joel R Neilson, Phillip A Sharp. Nat Methods 2007
5

Endogenous transcripts control miRNA levels and activity in mammalian cells by target-directed miRNA degradation.
Francesco Ghini, Carmela Rubolino, Montserrat Climent, Ines Simeone, Matteo J Marzi, Francesco Nicassio. Nat Commun 2018
47
10

Assessing the ceRNA hypothesis with quantitative measurements of miRNA and target abundance.
Rémy Denzler, Vikram Agarwal, Joanna Stefano, David P Bartel, Markus Stoffel. Mol Cell 2014
386
5

The widespread regulation of microRNA biogenesis, function and decay.
Jacek Krol, Inga Loedige, Witold Filipowicz. Nat Rev Genet 2010
5

The biogenesis, biology and characterization of circular RNAs.
Lasse S Kristensen, Maria S Andersen, Lotte V W Stagsted, Karoline K Ebbesen, Thomas B Hansen, Jørgen Kjems. Nat Rev Genet 2019
818
5

A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
Leonardo Salmena, Laura Poliseno, Yvonne Tay, Lev Kats, Pier Paolo Pandolfi. Cell 2011
5

Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA.
Catherine L Jopling, Minkyung Yi, Alissa M Lancaster, Stanley M Lemon, Peter Sarnow. Science 2005
4

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades.
Marc R Friedländer, Sebastian D Mackowiak, Na Li, Wei Chen, Nikolaus Rajewsky. Nucleic Acids Res 2012
4

The microRNA-17-92 family of microRNA clusters in development and disease.
Carla P Concepcion, Ciro Bonetti, Andrea Ventura. Cancer J 2012
169
4

Identification of mammalian microRNA host genes and transcription units.
Antony Rodriguez, Sam Griffiths-Jones, Jennifer L Ashurst, Allan Bradley. Genome Res 2004
4

Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Thomas Desvignes, Phillipe Loher, Karen Eilbeck, Jeffery Ma, Gianvito Urgese, Bastian Fromm, Jason Sydes, Ernesto Aparicio-Puerta, Victor Barrera, Roderic Espín,[...]. Bioinformatics 2020
19
21

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
4

MicroRNA targets in Drosophila.
Anton J Enright, Bino John, Ulrike Gaul, Thomas Tuschl, Chris Sander, Debora S Marks. Genome Biol 2003
4

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
4


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.