A citation-based method for searching scientific literature

Hua Sun, Pora Kim, Peilin Jia, Ae Kyung Park, Han Liang, Zhongming Zhao. Brief Bioinform 2019
Times Cited: 8







List of co-cited articles
27 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Integrated Molecular Characterization of Testicular Germ Cell Tumors.
Hui Shen, Juliann Shih, Daniel P Hollern, Linghua Wang, Reanne Bowlby, Satish K Tickoo, Vésteinn Thorsson, Andrew J Mungall, Yulia Newton, Apurva M Hegde,[...]. Cell Rep 2018
152
50

Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
37

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Damian Szklarczyk, John H Morris, Helen Cook, Michael Kuhn, Stefan Wyder, Milan Simonovic, Alberto Santos, Nadezhda T Doncheva, Alexander Roth, Peer Bork,[...]. Nucleic Acids Res 2017
25

Genetic effects on gene expression across human tissues.
Alexis Battle, Christopher D Brown, Barbara E Engelhardt, Stephen B Montgomery. Nature 2017
25

Systematic dissection of dysregulated transcription factor-miRNA feed-forward loops across tumor types.
Wei Jiang, Ramkrishna Mitra, Chen-Ching Lin, Quan Wang, Feixiong Cheng, Zhongming Zhao. Brief Bioinform 2016
29
25

Cytoscape: a software environment for integrated models of biomolecular interaction networks.
Paul Shannon, Andrew Markiel, Owen Ozier, Nitin S Baliga, Jonathan T Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker. Genome Res 2003
25

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
25

Exploring the molecular aspects associated with testicular germ cell tumors: a review.
Gaetano Facchini, Sabrina Rossetti, Carla Cavaliere, Carmine D'Aniello, Rossella Di Franco, Gelsomina Iovane, Giovanni Grimaldi, Raffaele Piscitelli, Paolo Muto, Gerardo Botti,[...]. Oncotarget 2017
12
25

The epigenetics of testicular germ cell tumors: looking for novel disease biomarkers.
Ana Laura Costa, João Lobo, Carmen Jerónimo, Rui Henrique. Epigenomics 2017
26
25

Classification, epidemiology and therapies for testicular germ cell tumours.
Nikhil Vasdev, Andrew Moon, Andrew C Thorpe. Int J Dev Biol 2013
33
25

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes.
V Matys, O V Kel-Margoulis, E Fricke, I Liebich, S Land, A Barre-Dirrie, I Reuter, D Chekmenev, M Krull, K Hornischer,[...]. Nucleic Acids Res 2006
25

miRTarBase: a database curates experimentally validated microRNA-target interactions.
Sheng-Da Hsu, Feng-Mao Lin, Wei-Yun Wu, Chao Liang, Wei-Chih Huang, Wen-Ling Chan, Wen-Ting Tsai, Goun-Zhou Chen, Chia-Jung Lee, Chih-Min Chiu,[...]. Nucleic Acids Res 2011
746
25

The role of site accessibility in microRNA target recognition.
Michael Kertesz, Nicola Iovino, Ulrich Unnerstall, Ulrike Gaul, Eran Segal. Nat Genet 2007
25

Genomic analysis of essentiality within protein networks.
Haiyuan Yu, Dov Greenbaum, Hao Xin Lu, Xiaowei Zhu, Mark Gerstein. Trends Genet 2004
204
25

HMDD v2.0: a database for experimentally supported human microRNA and disease associations.
Yang Li, Chengxiang Qiu, Jian Tu, Bin Geng, Jichun Yang, Tianzi Jiang, Qinghua Cui. Nucleic Acids Res 2014
396
25

PhenomiR: microRNAs in human diseases and biological processes.
Andreas Ruepp, Andreas Kowarsch, Fabian Theis. Methods Mol Biol 2012
42
25

Identification of 19 new risk loci and potential regulatory mechanisms influencing susceptibility to testicular germ cell tumor.
Kevin Litchfield, Max Levy, Giulia Orlando, Chey Loveday, Philip J Law, Gabriele Migliorini, Amy Holroyd, Peter Broderick, Robert Karlsson, Trine B Haugen,[...]. Nat Genet 2017
68
25

A Survey and Comparative Study of Statistical Tests for Identifying Differential Expression from Microarray Data.
Sanghamitra Bandyopadhyay, Saurav Mallik, Anirban Mukhopadhyay. IEEE/ACM Trans Comput Biol Bioinform 2014
40
25

Systematic analysis of telomere length and somatic alterations in 31 cancer types.
Floris P Barthel, Wei Wei, Ming Tang, Emmanuel Martinez-Ledesma, Xin Hu, Samirkumar B Amin, Kadir C Akdemir, Sahil Seth, Xingzhi Song, Qianghu Wang,[...]. Nat Genet 2017
201
25

The genomic landscape of testicular germ cell tumours: from susceptibility to treatment.
Kevin Litchfield, Max Levy, Robert A Huddart, Janet Shipley, Clare Turnbull. Nat Rev Urol 2016
55
25

Epigenetics and testicular germ cell tumors.
Robert Buljubašić, Maja Buljubašić, Ana Katušić Bojanac, Monika Ulamec, Maja Vlahović, Davor Ježek, Floriana Bulić-Jakuš, Nino Sinčić. Gene 2018
18
25

Analyzing large gene expression and methylation data profiles using StatBicRM: statistical biclustering-based rule mining.
Ujjwal Maulik, Saurav Mallik, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay. PLoS One 2015
18
25

miR2Disease: a manually curated database for microRNA deregulation in human disease.
Qinghua Jiang, Yadong Wang, Yangyang Hao, Liran Juan, Mingxiang Teng, Xinjun Zhang, Meimei Li, Guohua Wang, Yunlong Liu. Nucleic Acids Res 2009
845
25

The microRNA.org resource: targets and expression.
Doron Betel, Manda Wilson, Aaron Gabow, Debora S Marks, Chris Sander. Nucleic Acids Res 2008
25

Presence of somatic mutations within PIK3CA, AKT, RAS, and FGFR3 but not BRAF in cisplatin-resistant germ cell tumors.
Darren R Feldman, Gopa Iyer, Lindsay Van Alstine, Sujata Patil, Hikmat Al-Ahmadie, Victor E Reuter, George J Bosl, Raju S Chaganti, David B Solit. Clin Cancer Res 2014
63
25

WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
25

Visualizing and interpreting cancer genomics data via the Xena platform.
Mary J Goldman, Brian Craft, Mim Hastie, Kristupas Repečka, Fran McDade, Akhil Kamath, Ayan Banerjee, Yunhai Luo, Dave Rogers, Angela N Brooks,[...]. Nat Biotechnol 2020
238
25


Environmental risk factors for inflammatory bowel disease.
Ashwin N Ananthakrishnan. Gastroenterol Hepatol (N Y) 2013
63
12

Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci.
Andre Franke, Dermot P B McGovern, Jeffrey C Barrett, Kai Wang, Graham L Radford-Smith, Tariq Ahmad, Charlie W Lees, Tobias Balschun, James Lee, Rebecca Roberts,[...]. Nat Genet 2010
12

Transcriptional risk scores link GWAS to eQTLs and predict complications in Crohn's disease.
Urko M Marigorta, Lee A Denson, Jeffrey S Hyams, Kajari Mondal, Jarod Prince, Thomas D Walters, Anne Griffiths, Joshua D Noe, Wallace V Crandall, Joel R Rosh,[...]. Nat Genet 2017
62
12

Transcriptome-wide association study of schizophrenia and chromatin activity yields mechanistic disease insights.
Alexander Gusev, Nicholas Mancuso, Hyejung Won, Maria Kousi, Hilary K Finucane, Yakir Reshef, Lingyun Song, Alexias Safi, Steven McCarroll, Benjamin M Neale,[...]. Nat Genet 2018
144
12

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks.
Gabriela Bindea, Bernhard Mlecnik, Hubert Hackl, Pornpimol Charoentong, Marie Tosolini, Amos Kirilovsky, Wolf-Herman Fridman, Franck Pagès, Zlatko Trajanoski, Jérôme Galon. Bioinformatics 2009
12

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
Luke Jostins, Stephan Ripke, Rinse K Weersma, Richard H Duerr, Dermot P McGovern, Ken Y Hui, James C Lee, L Philip Schumm, Yashoda Sharma, Carl A Anderson,[...]. Nature 2012
12

Sherlock: detecting gene-disease associations by matching patterns of expression QTL and GWAS.
Xin He, Chris K Fuller, Yi Song, Qingying Meng, Bin Zhang, Xia Yang, Hao Li. Am J Hum Genet 2013
138
12

Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls.
Nick Craddock, Matthew E Hurles, Niall Cardin, Richard D Pearson, Vincent Plagnol, Samuel Robson, Damjan Vukcevic, Chris Barnes, Donald F Conrad, Eleni Giannoulatou,[...]. Nature 2010
569
12

Prioritizing candidate disease genes by network-based boosting of genome-wide association data.
Insuk Lee, U Martin Blom, Peggy I Wang, Jung Eun Shim, Edward M Marcotte. Genome Res 2011
397
12


Network medicine: a network-based approach to human disease.
Albert-László Barabási, Natali Gulbahce, Joseph Loscalzo. Nat Rev Genet 2011
12

Fast and Rigorous Computation of Gene and Pathway Scores from SNP-Based Summary Statistics.
David Lamparter, Daniel Marbach, Rico Rueedi, Zoltán Kutalik, Sven Bergmann. PLoS Comput Biol 2016
142
12

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types.
Jiarui Ding, Melissa K McConechy, Hugo M Horlings, Gavin Ha, Fong Chun Chan, Tyler Funnell, Sarah C Mullaly, Jüri Reimand, Ali Bashashati, Gary D Bader,[...]. Nat Commun 2015
55
12

deTS: tissue-specific enrichment analysis to decode tissue specificity.
Guangsheng Pei, Yulin Dai, Zhongming Zhao, Peilin Jia. Bioinformatics 2019
15
12

COP9 signalosome subunit 8 is essential for peripheral T cell homeostasis and antigen receptor-induced entry into the cell cycle from quiescence.
Suchithra Menon, Hongbo Chi, Huiyong Zhang, Xing Wang Deng, Richard A Flavell, Ning Wei. Nat Immunol 2007
86
12

Mega-analysis of Odds Ratio: A Convergent Method for a Deep Understanding of the Genetic Evidence in Schizophrenia.
Peilin Jia, Xiangning Chen, Wei Xie, Kenneth S Kendler, Zhongming Zhao. Schizophr Bull 2019
9
12

Genome-wide gene expression differences in Crohn's disease and ulcerative colitis from endoscopic pinch biopsies: insights into distinctive pathogenesis.
Feng Wu, Themistocles Dassopoulos, Leslie Cope, Anirban Maitra, Steven R Brant, Mary L Harris, Theodore M Bayless, Giovanni Parmigiani, Shukti Chakravarti. Inflamm Bowel Dis 2007
185
12


Molecular classification of Crohn's disease and ulcerative colitis patients using transcriptional profiles in peripheral blood mononuclear cells.
Michael E Burczynski, Ron L Peterson, Natalie C Twine, Krystyna A Zuberek, Brendan J Brodeur, Lori Casciotti, Vasu Maganti, Padma S Reddy, Andrew Strahs, Fred Immermann,[...]. J Mol Diagn 2006
110
12

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
12

How many genes underlie the occurrence of common complex diseases in the population?
Quanhe Yang, Muin J Khoury, Jm Friedman, Julian Little, W Dana Flanders. Int J Epidemiol 2005
124
12

More Is Better: Recent Progress in Multi-Omics Data Integration Methods.
Sijia Huang, Kumardeep Chaudhary, Lana X Garmire. Front Genet 2017
230
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.