A citation-based method for searching scientific literature

Shigeru Matsuda, Takehiro Yasukawa, Yuriko Sakaguchi, Kenji Ichiyanagi, Motoko Unoki, Kazuhito Gotoh, Kei Fukuda, Hiroyuki Sasaki, Tsutomu Suzuki, Dongchon Kang. Sci Rep 2018
Times Cited: 16







List of co-cited articles
168 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Evidence Suggesting Absence of Mitochondrial DNA Methylation.
Mie Mechta, Lars R Ingerslev, Odile Fabre, Martin Picard, Romain Barrès. Front Genet 2017
65
75

The control region of mitochondrial DNA shows an unusual CpG and non-CpG methylation pattern.
Dina Bellizzi, Patrizia D'Aquila, Teresa Scafone, Marco Giordano, Vincenzo Riso, Andrea Riccio, Giuseppe Passarino. DNA Res 2013
153
68

DNA methyltransferase 1, cytosine methylation, and cytosine hydroxymethylation in mammalian mitochondria.
Lisa S Shock, Prashant V Thakkar, Erica J Peterson, Richard G Moran, Shirley M Taylor. Proc Natl Acad Sci U S A 2011
319
62

CpG methylation patterns of human mitochondrial DNA.
Baojing Liu, Qingqing Du, Lu Chen, Guangping Fu, Shujin Li, Lihong Fu, Xiaojing Zhang, Chunling Ma, Cong Bin. Sci Rep 2016
89
62



Epigenetic regulation of motor neuron cell death through DNA methylation.
Barry A Chestnut, Qing Chang, Ann Price, Catherine Lesuisse, Margaret Wong, Lee J Martin. J Neurosci 2011
221
43

Regulation of mitochondrial gene expression, the epigenetic enigma.
Archibold Mposhi, Monique Gp Van der Wijst, Klaas Nico Faber, Marianne G Rots. Front Biosci (Landmark Ed) 2017
33
43


Mitochondrial DNMT3A and DNA methylation in skeletal muscle and CNS of transgenic mouse models of ALS.
Margaret Wong, Barry Gertz, Barry A Chestnut, Lee J Martin. Front Cell Neurosci 2013
90
43

Methylation profiling by bisulfite sequencing analysis of the mtDNA Non-Coding Region in replicative and senescent Endothelial Cells.
Valentina Bianchessi, Maria Cristina Vinci, Patrizia Nigro, Valeria Rizzi, Floriana Farina, Maurizio C Capogrossi, Giulio Pompilio, Valentina Gualdi, Andrea Lauri. Mitochondrion 2016
31
37

Altered Mitochondrial DNA Methylation Pattern in Alzheimer Disease-Related Pathology and in Parkinson Disease.
Marta Blanch, Jose Luis Mosquera, Belén Ansoleaga, Isidre Ferrer, Marta Barrachina. Am J Pathol 2016
85
37

Effect of aging on 5-hydroxymethylcytosine in brain mitochondria.
Svetlana Dzitoyeva, Hu Chen, Hari Manev. Neurobiol Aging 2012
120
37



Epigenetic Modification of Mitochondrial DNA in the Development of Diabetic Retinopathy.
Manish Mishra, Renu A Kowluru. Invest Ophthalmol Vis Sci 2015
80
31

DNA methyltransferase 1 mutations and mitochondrial pathology: is mtDNA methylated?
Alessandra Maresca, Mirko Zaffagnini, Leonardo Caporali, Valerio Carelli, Claudia Zanna. Front Genet 2015
41
31

Methylation pattern of mouse mitochondrial DNA.
Y Pollack, J Kasir, R Shemer, S Metzger, M Szyf. Nucleic Acids Res 1984
115
31


Epigenetic modification of liver mitochondrial DNA is associated with histological severity of nonalcoholic fatty liver disease.
Carlos Jose Pirola, Tomas Fernández Gianotti, Adriana Laura Burgueño, Manuel Rey-Funes, Cesar Fabian Loidl, Pablo Mallardi, Julio San Martino, Gustavo Osvaldo Castaño, S Sookoian. Gut 2013
193
31

DNA Methyltransferase1 (DNMT1) Isoform3 methylates mitochondrial genome and modulates its biology.
Sunil Kumar Saini, Kailash Chandra Mangalhara, Gopinath Prakasam, R N K Bamezai. Sci Rep 2017
40
31

Human mitochondrial DNA is extensively methylated in a non-CpG context.
Vibha Patil, Cyrille Cuenin, Felicia Chung, Jesus R Rodriguez Aguilera, Nora Fernandez-Jimenez, Irati Romero-Garmendia, Jose Ramon Bilbao, Vincent Cahais, Joseph Rothwell, Zdenko Herceg. Nucleic Acids Res 2019
45
31

Cross-strand binding of TFAM to a single mtDNA molecule forms the mitochondrial nucleoid.
Christian Kukat, Karen M Davies, Christian A Wurm, Henrik Spåhr, Nina A Bonekamp, Inge Kühl, Friederike Joos, Paola Loguercio Polosa, Chan Bae Park, Viktor Posse,[...]. Proc Natl Acad Sci U S A 2015
165
25

Maternal smoking during pregnancy is associated with mitochondrial DNA methylation.
David A Armstrong, Benjamin B Green, Bailey A Blair, Dylan J Guerin, Julia F Litzky, Niraj R Chavan, Kevin J Pearson, Carmen J Marsit. Environ Epigenet 2016
15
26

Hypomethylation of mitochondrial D-loop and ND6 with increased mitochondrial DNA copy number in the arsenic-exposed population.
Tamalika Sanyal, Pritha Bhattacharjee, Sandip Bhattacharjee, Pritha Bhattacharjee. Toxicology 2018
26
25

Human mitochondrial transcription factor A induces a U-turn structure in the light strand promoter.
Anna Rubio-Cosials, Jasmin F Sidow, Nereida Jiménez-Menéndez, Pablo Fernández-Millán, Julio Montoya, Howard T Jacobs, Miquel Coll, Pau Bernadó, Maria Solà. Nat Struct Mol Biol 2011
121
25

Decreased Methylation of the Mitochondrial D-Loop Region in Late-Onset Alzheimer's Disease.
Andrea Stoccoro, Gabriele Siciliano, Lucia Migliore, Fabio Coppedè. J Alzheimers Dis 2017
35
25

Mitochondrial DNA Transcription and Its Regulation: An Evolutionary Perspective.
Gilad Barshad, Shani Marom, Tal Cohen, Dan Mishmar. Trends Genet 2018
50
25

Effects of Air Pollution and Blood Mitochondrial DNA Methylation on Markers of Heart Rate Variability.
Hyang-Min Byun, Elena Colicino, Letizia Trevisi, Tianteng Fan, David C Christiani, Andrea A Baccarelli. J Am Heart Assoc 2016
52
25

Methylation of mitochondrial DNA is not a useful marker for cancer detection.
Masato Maekawa, Terumi Taniguchi, Hitomi Higashi, Haruhiko Sugimura, Kokichi Sugano, Takashi Kanno. Clin Chem 2004
46
25

Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins.
Oliver Rackham, Anne-Marie J Shearwood, Tim R Mercer, Stefan M K Davies, John S Mattick, Aleksandra Filipovska. RNA 2011
160
25

Regional differences in mitochondrial DNA methylation in human post-mortem brain tissue.
Matthew Devall, Rebecca G Smith, Aaron Jeffries, Eilis Hannon, Matthew N Davies, Leonard Schalkwyk, Jonathan Mill, Michael Weedon, Katie Lunnon. Clin Epigenetics 2017
15
26

Single-nucleotide-resolution sequencing of human N6-methyldeoxyadenosine reveals strand-asymmetric clusters associated with SSBP1 on the mitochondrial genome.
Casslynn W Q Koh, Yeek Teck Goh, Joel D W Toh, Suat Peng Neo, Sarah B Ng, Jayantha Gunaratne, Yong-Gui Gao, Stephen R Quake, William F Burkholder, Wee Siong S Goh. Nucleic Acids Res 2018
22
25

Acetylation and phosphorylation of human TFAM regulate TFAM-DNA interactions via contrasting mechanisms.
Graeme A King, Maryam Hashemi Shabestari, Kees-Karel H Taris, Ashutosh K Pandey, Sundararajan Venkatesh, Jayapalraja Thilagavathi, Kamalendra Singh, Rama Krishna Koppisetti, Dmitry Temiakov, Wouter H Roos,[...]. Nucleic Acids Res 2018
26
25

Mitochondrial DNA: Epigenetics and environment.
Nidhi Sharma, Monica S Pasala, Aishwarya Prakash. Environ Mol Mutagen 2019
34
25

The strand-biased mitochondrial DNA methylome and its regulation by DNMT3A.
Xiaoyang Dou, Jerome D Boyd-Kirkup, Joseph McDermott, Xiaoli Zhang, Fang Li, Bowen Rong, Rui Zhang, Bisi Miao, Peilin Chen, Hao Cheng,[...]. Genome Res 2019
24
25


The mitochondrial transcription factor TFAM coordinates the assembly of multiple DNA molecules into nucleoid-like structures.
Brett A Kaufman, Nela Durisic, Jeffrey M Mativetsky, Santiago Costantino, Mark A Hancock, Peter Grutter, Eric A Shoubridge. Mol Biol Cell 2007
257
18

Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation.
Huu B Ngo, Geoffrey A Lovely, Rob Phillips, David C Chan. Nat Commun 2014
111
18

Unexpected sequences and structures of mtDNA required for efficient transcription from the first heavy-strand promoter.
Akira Uchida, Divakaran Murugesapillai, Markus Kastner, Yao Wang, Maria F Lodeiro, Shaan Prabhakar, Guinevere V Oliver, Jamie J Arnold, L James Maher, Mark C Williams,[...]. Elife 2017
16
18

Transcription from the second heavy-strand promoter of human mtDNA is repressed by transcription factor A in vitro.
Maria F Lodeiro, Akira Uchida, Megan Bestwick, Ibrahim M Moustafa, Jamie J Arnold, Gerald S Shadel, Craig E Cameron. Proc Natl Acad Sci U S A 2012
39
18



Topological requirements of the mitochondrial heavy-strand promoters.
Ornella Zollo, Neal Sondheimer. Transcription 2017
4
75

Methylation of mitochondrial DNA displacement loop region regulates mitochondrial copy number in colorectal cancer.
Huan Tong, Linhao Zhang, Jinhang Gao, Shilei Wen, Hongying Zhou, Shi Feng. Mol Med Rep 2017
20
18



Structural Basis of Mitochondrial Transcription Initiation.
Hauke S Hillen, Yaroslav I Morozov, Azadeh Sarfallah, Dmitry Temiakov, Patrick Cramer. Cell 2017
59
18

Mitochondrial Epigenetic Changes Link to Increased Diabetes Risk and Early-Stage Prediabetes Indicator.
Louise D Zheng, Leah E Linarelli, Joseph Brooke, Cayleen Smith, Sarah S Wall, Mark H Greenawald, Richard W Seidel, Paul A Estabrooks, Fabio A Almeida, Zhiyong Cheng. Oxid Med Cell Longev 2016
21
18



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.