A citation-based method for searching scientific literature

Diana Pereira Fernandes, Mainá Bitar, Frank M J Jacobs, Guy Barry. Noncoding RNA 2018
Times Cited: 35







List of co-cited articles
311 articles co-cited >1



Times Cited
  Times     Co-cited
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The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.
Thomas Derrien, Rory Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen Tilgner, Gregory Guernec, David Martin, Angelika Merkel, David G Knowles,[...]. Genome Res 2012
31

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat.
Claudia Carrieri, Laura Cimatti, Marta Biagioli, Anne Beugnet, Silvia Zucchelli, Stefania Fedele, Elisa Pesce, Isidre Ferrer, Licio Collavin, Claudio Santoro,[...]. Nature 2012
586
20

Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation.
Farzaneh Modarresi, Mohammad Ali Faghihi, Miguel A Lopez-Toledano, Roya Pedram Fatemi, Marco Magistri, Shaun P Brothers, Marcel P van der Brug, Claes Wahlestedt. Nat Biotechnol 2012
394
20

The long non-coding RNA Gomafu is acutely regulated in response to neuronal activation and involved in schizophrenia-associated alternative splicing.
G Barry, J A Briggs, D P Vanichkina, E M Poth, N J Beveridge, V S Ratnu, S P Nayler, K Nones, J Hu, T W Bredy,[...]. Mol Psychiatry 2014
254
20

Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase.
Mohammad Ali Faghihi, Farzaneh Modarresi, Ahmad M Khalil, Douglas E Wood, Barbara G Sahagan, Todd E Morgan, Caleb E Finch, Georges St Laurent, Paul J Kenny, Claes Wahlestedt. Nat Med 2008
917
17

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
John L Rinn, Michael Kertesz, Jordon K Wang, Sharon L Squazzo, Xiao Xu, Samantha A Brugmann, L Henry Goodnough, Jill A Helms, Peggy J Farnham, Eran Segal,[...]. Cell 2007
17

Mechanisms of Long Non-coding RNAs in Mammalian Nervous System Development, Plasticity, Disease, and Evolution.
James A Briggs, Ernst J Wolvetang, John S Mattick, John L Rinn, Guy Barry. Neuron 2015
214
17

Molecular mechanisms of long noncoding RNAs.
Kevin C Wang, Howard Y Chang. Mol Cell 2011
17

A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression.
Delphine Bernard, Kannanganattu V Prasanth, Vidisha Tripathi, Sabrina Colasse, Tetsuya Nakamura, Zhenyu Xuan, Michael Q Zhang, Frédéric Sedel, Laurent Jourdren, Fanny Coulpier,[...]. EMBO J 2010
474
17


An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.
Christine M Clemson, John N Hutchinson, Sergio A Sara, Alexander W Ensminger, Archa H Fox, Andrew Chess, Jeanne B Lawrence. Mol Cell 2009
858
17

lincRNAs act in the circuitry controlling pluripotency and differentiation.
Mitchell Guttman, Julie Donaghey, Bryce W Carey, Manuel Garber, Jennifer K Grenier, Glen Munson, Geneva Young, Anne Bergstrom Lucas, Robert Ach, Laurakay Bruhn,[...]. Nature 2011
14

Long noncoding RNAs(lncRNAs) and the molecular hallmarks of aging.
Ioannis Grammatikakis, Amaresh C Panda, Kotb Abdelmohsen, Myriam Gorospe. Aging (Albany NY) 2014
119
14

The long non-coding RNA NEAT1 is responsive to neuronal activity and is associated with hyperexcitability states.
Guy Barry, James A Briggs, Do Won Hwang, Sam P Nayler, Patrick R J Fortuna, Nicky Jonkhout, Fabien Dachet, Jesper L V Maag, Pieter Mestdagh, Erin M Singh,[...]. Sci Rep 2017
49
14

Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation.
Tim R Mercer, Irfan A Qureshi, Solen Gokhan, Marcel E Dinger, Guangyu Li, John S Mattick, Mark F Mehler. BMC Neurosci 2010
286
14

Activity-dependent human brain coding/noncoding gene regulatory networks.
Leonard Lipovich, Fabien Dachet, Juan Cai, Shruti Bagla, Karina Balan, Hui Jia, Jeffrey A Loeb. Genetics 2012
119
14

Long Non-Coding RNA Expression during Aging in the Human Subependymal Zone.
Guy Barry, Boris Guennewig, Samantha Fung, Dominik Kaczorowski, Cynthia Shannon Weickert. Front Neurol 2015
28
17

Specific expression of long noncoding RNAs in the mouse brain.
Tim R Mercer, Marcel E Dinger, Susan M Sunkin, Mark F Mehler, John S Mattick. Proc Natl Acad Sci U S A 2008
822
14

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Ahmad M Khalil, Mitchell Guttman, Maite Huarte, Manuel Garber, Arjun Raj, Dianali Rivea Morales, Kelly Thomas, Aviva Presser, Bradley E Bernstein, Alexander van Oudenaarden,[...]. Proc Natl Acad Sci U S A 2009
11

The human PINK1 locus is regulated in vivo by a non-coding natural antisense RNA during modulation of mitochondrial function.
Camilla Scheele, Natasa Petrovic, Mohammad A Faghihi, Timo Lassmann, Katarina Fredriksson, Olav Rooyackers, Claes Wahlestedt, Liam Good, James A Timmons. BMC Genomics 2007
91
11

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters.
Tiffany Hung, Yulei Wang, Michael F Lin, Ashley K Koegel, Yojiro Kotake, Gavin D Grant, Hugo M Horlings, Nilay Shah, Christopher Umbricht, Pei Wang,[...]. Nat Genet 2011
784
11


Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain.
Jasmina Ponjavic, Peter L Oliver, Gerton Lunter, Chris P Ponting. PLoS Genet 2009
276
11


The RNA world of human ageing.
J C Gomez-Verjan, E R Vazquez-Martinez, N A Rivero-Segura, R H Medina-Campos. Hum Genet 2018
17
23

The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation.
Vidisha Tripathi, Jonathan D Ellis, Zhen Shen, David Y Song, Qun Pan, Andrew T Watt, Susan M Freier, C Frank Bennett, Alok Sharma, Paula A Bubulya,[...]. Mol Cell 2010
11

Role of a neuronal small non-messenger RNA: behavioural alterations in BC1 RNA-deleted mice.
L Lewejohann, B V Skryabin, N Sachser, C Prehn, P Heiduschka, S Thanos, U Jordan, G Dell'Omo, A L Vyssotski, M G Pleskacheva,[...]. Behav Brain Res 2004
118
11

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.
Mitchell Guttman, Ido Amit, Manuel Garber, Courtney French, Michael F Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W Carey, John P Cassady,[...]. Nature 2009
11

The long noncoding RNA RMST interacts with SOX2 to regulate neurogenesis.
Shi-Yan Ng, Gireesh K Bogu, Boon Seng Soh, Lawrence W Stanton. Mol Cell 2013
261
11

Transcriptome analyses of adult mouse brain reveal enrichment of lncRNAs in specific brain regions and neuronal populations.
Beena M Kadakkuzha, Xin-An Liu, Jennifer McCrate, Gautam Shankar, Valerio Rizzo, Alina Afinogenova, Brandon Young, Mohammad Fallahi, Anthony C Carvalloza, Bindu Raveendra,[...]. Front Cell Neurosci 2015
47
11

Long noncoding RNAs in aging and age-related diseases.
Sukhleen Kour, Pramod C Rath. Ageing Res Rev 2016
49
11

The Long Non-Coding RNAs in Neurodegenerative Diseases: Novel Mechanisms of Pathogenesis.
Paola Riva, Antonia Ratti, Marco Venturin. Curr Alzheimer Res 2016
124
11

Long Non-Coding RNAs in the Regulation of Gene Expression: Physiology and Disease.
Juliane C R Fernandes, Stephanie M Acuña, Juliana I Aoki, Lucile M Floeter-Winter, Sandra M Muxel. Noncoding RNA 2019
203
11

NEAT1 long noncoding RNA regulates transcription via protein sequestration within subnuclear bodies.
Tetsuro Hirose, Giorgio Virnicchi, Akie Tanigawa, Takao Naganuma, Ruohan Li, Hiroshi Kimura, Takahide Yokoi, Shinichi Nakagawa, Marianne Bénard, Archa H Fox,[...]. Mol Biol Cell 2014
238
11

Long non-coding RNAs: new players in cell differentiation and development.
Alessandro Fatica, Irene Bozzoni. Nat Rev Genet 2014
11

The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells.
Alexander D Ramos, Rebecca E Andersen, Siyuan John Liu, Tomasz Jan Nowakowski, Sung Jun Hong, Caitlyn Gertz, Ryan D Salinas, Hosniya Zarabi, Arnold R Kriegstein, Daniel A Lim. Cell Stem Cell 2015
196
11

Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1.
Hitomi Tsuiji, Rei Yoshimoto, Yuko Hasegawa, Masaaki Furuno, Minoru Yoshida, Shinichi Nakagawa. Genes Cells 2011
100
11

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution.
Igor Ulitsky, Alena Shkumatava, Calvin H Jan, Hazel Sive, David P Bartel. Cell 2011
759
11


Long noncoding RNAs in patients with acute myocardial infarction.
Mélanie Vausort, Daniel R Wagner, Yvan Devaux. Circ Res 2014
326
8

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
8

Identification, stability and expression of Sirt1 antisense long non-coding RNA.
Yu Wang, Wei-Jun Pang, Ning Wei, Yan Xiong, Wen-Jing Wu, Cun-Zhen Zhao, Qing-Wu Shen, Gong-She Yang. Gene 2014
40
8

Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA.
Wenqiang Yu, David Gius, Patrick Onyango, Kristi Muldoon-Jacobs, Judith Karp, Andrew P Feinberg, Hengmi Cui. Nature 2008
628
8

Expression analysis of the long non-coding RNA antisense to Uchl1 (AS Uchl1) during dopaminergic cells' differentiation in vitro and in neurochemical models of Parkinson's disease.
Claudia Carrieri, Alistair R R Forrest, Claudio Santoro, Francesca Persichetti, Piero Carninci, Silvia Zucchelli, Stefano Gustincich. Front Cell Neurosci 2015
90
8

Genome-wide identification of polycomb-associated RNAs by RIP-seq.
Jing Zhao, Toshiro K Ohsumi, Johnny T Kung, Yuya Ogawa, Daniel J Grau, Kavitha Sarma, Ji Joon Song, Robert E Kingston, Mark Borowsky, Jeannie T Lee. Mol Cell 2010
683
8

Evidence for natural antisense transcript-mediated inhibition of microRNA function.
Mohammad Ali Faghihi, Ming Zhang, Jia Huang, Farzaneh Modarresi, Marcel P Van der Brug, Michael A Nalls, Mark R Cookson, Georges St-Laurent, Claes Wahlestedt. Genome Biol 2010
325
8


Non-coding RNA.
John S Mattick, Igor V Makunin. Hum Mol Genet 2006
8

Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes.
Kerstin-Maike Schmitz, Christine Mayer, Anna Postepska, Ingrid Grummt. Genes Dev 2010
327
8

Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases.
Ping Wu, Xialin Zuo, Houliang Deng, Xiaoxia Liu, Li Liu, Aimin Ji. Brain Res Bull 2013
217
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.