A citation-based method for searching scientific literature

Christopher T Fincher, Omri Wurtzel, Thom de Hoog, Kellie M Kravarik, Peter W Reddien. Science 2018
Times Cited: 144







List of co-cited articles
1035 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics.
Mireya Plass, Jordi Solana, F Alexander Wolf, Salah Ayoub, Aristotelis Misios, Petar Glažar, Benedikt Obermayer, Fabian J Theis, Christine Kocks, Nikolaus Rajewsky. Science 2018
171
68

Prospectively Isolated Tetraspanin+ Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration.
An Zeng, Hua Li, Longhua Guo, Xin Gao, Sean McKinney, Yongfu Wang, Zulin Yu, Jungeun Park, Craig Semerad, Eric Ross,[...]. Cell 2018
79
41


Comprehensive single-cell transcriptional profiling of a multicellular organism.
Junyue Cao, Jonathan S Packer, Vijay Ramani, Darren A Cusanovich, Chau Huynh, Riza Daza, Xiaojie Qiu, Choli Lee, Scott N Furlan, Frank J Steemers,[...]. Science 2017
445
25

Single-cell analysis reveals functionally distinct classes within the planarian stem cell compartment.
Josien C van Wolfswinkel, Daniel E Wagner, Peter W Reddien. Cell Stem Cell 2014
156
23

SMEDWI-2 is a PIWI-like protein that regulates planarian stem cells.
Peter W Reddien, Néstor J Oviedo, Joya R Jennings, James C Jenkin, Alejandro Sánchez Alvarado. Science 2005
398
23

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
22



Formaldehyde-based whole-mount in situ hybridization method for planarians.
Bret J Pearson, George T Eisenhoffer, Kyle A Gurley, Jochen C Rink, Diane E Miller, Alejandro Sánchez Alvarado. Dev Dyn 2009
226
20

A mex3 homolog is required for differentiation during planarian stem cell lineage development.
Shu Jun Zhu, Stephanie E Hallows, Ko W Currie, ChangJiang Xu, Bret J Pearson. Elife 2015
60
30

The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms.
Markus Alexander Grohme, Siegfried Schloissnig, Andrei Rozanski, Martin Pippel, George Robert Young, Sylke Winkler, Holger Brandl, Ian Henry, Andreas Dahl, Sean Powell,[...]. Nature 2018
83
21


Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
17

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis.
Jeffrey A Farrell, Yiqun Wang, Samantha J Riesenfeld, Karthik Shekhar, Aviv Regev, Alexander F Schier. Science 2018
238
17

Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo.
Daniel E Wagner, Caleb Weinreb, Zach M Collins, James A Briggs, Sean G Megason, Allon M Klein. Science 2018
270
17

Muscle cells provide instructions for planarian regeneration.
Jessica N Witchley, Mirjam Mayer, Daniel E Wagner, Jared H Owen, Peter W Reddien. Cell Rep 2013
126
17


PlanMine--a mineable resource of planarian biology and biodiversity.
Holger Brandl, HongKee Moon, Miquel Vila-Farré, Shang-Yun Liu, Ian Henry, Jochen C Rink. Nucleic Acids Res 2016
85
18

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
16

Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq.
Arnau Sebé-Pedrós, Baptiste Saudemont, Elad Chomsky, Flora Plessier, Marie-Pierre Mailhé, Justine Renno, Yann Loe-Mie, Aviezer Lifshitz, Zohar Mukamel, Sandrine Schmutz,[...]. Cell 2018
88
18

The Drosophila embryo at single-cell transcriptome resolution.
Nikos Karaiskos, Philipp Wahle, Jonathan Alles, Anastasiya Boltengagen, Salah Ayoub, Claudia Kipar, Christine Kocks, Nikolaus Rajewsky, Robert P Zinzen. Science 2017
169
16

A Generic and Cell-Type-Specific Wound Response Precedes Regeneration in Planarians.
Omri Wurtzel, Lauren E Cote, Amber Poirier, Rahul Satija, Aviv Regev, Peter W Reddien. Dev Cell 2015
111
15

A comparative transcriptomic analysis reveals conserved features of stem cell pluripotency in planarians and mammals.
Roselyne M Labbé, Manuel Irimia, Ko W Currie, Alexander Lin, Shu Jun Zhu, David D R Brown, Eric J Ross, Veronique Voisin, Gary D Bader, Benjamin J Blencowe,[...]. Stem Cells 2012
123
15

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution.
James A Briggs, Caleb Weinreb, Daniel E Wagner, Sean Megason, Leonid Peshkin, Marc W Kirschner, Allon M Klein. Science 2018
195
15

Mapping the Mouse Cell Atlas by Microwell-Seq.
Xiaoping Han, Renying Wang, Yincong Zhou, Lijiang Fei, Huiyu Sun, Shujing Lai, Assieh Saadatpour, Ziming Zhou, Haide Chen, Fang Ye,[...]. Cell 2018
402
15

Planarian Epidermal Stem Cells Respond to Positional Cues to Promote Cell-Type Diversity.
Omri Wurtzel, Isaac M Oderberg, Peter W Reddien. Dev Cell 2017
40
35

Fundamentals of planarian regeneration.
Peter W Reddien, Alejandro Sánchez Alvarado. Annu Rev Cell Dev Biol 2004
465
14

A molecular wound response program associated with regeneration initiation in planarians.
Danielle Wenemoser, Sylvain W Lapan, Alex W Wilkinson, George W Bell, Peter W Reddien. Genes Dev 2012
141
14


PlanMine 3.0-improvements to a mineable resource of flatworm biology and biodiversity.
Andrei Rozanski, HongKee Moon, Holger Brandl, José M Martín-Durán, Markus A Grohme, Katja Hüttner, Kerstin Bartscherer, Ian Henry, Jochen C Rink. Nucleic Acids Res 2019
39
35

Stem cell differentiation trajectories in Hydra resolved at single-cell resolution.
Stefan Siebert, Jeffrey A Farrell, Jack F Cazet, Yashodara Abeykoon, Abby S Primack, Christine E Schnitzler, Celina E Juliano. Science 2019
76
18

SmedGD 2.0: The Schmidtea mediterranea genome database.
Sofia M C Robb, Kirsten Gotting, Eric Ross, Alejandro Sánchez Alvarado. Genesis 2015
87
14

Isolation of planarian X-ray-sensitive stem cells by fluorescence-activated cell sorting.
Tetsutaro Hayashi, Maki Asami, Sayaka Higuchi, Norito Shibata, Kiyokazu Agata. Dev Growth Differ 2006
162
13

Evolution of pallium, hippocampus, and cortical cell types revealed by single-cell transcriptomics in reptiles.
Maria Antonietta Tosches, Tracy M Yamawaki, Robert K Naumann, Ariel A Jacobi, Georgi Tushev, Gilles Laurent. Science 2018
127
13

Cell death and tissue remodeling in planarian regeneration.
Jason Pellettieri, Patrick Fitzgerald, Shigeki Watanabe, Joel Mancuso, Douglas R Green, Alejandro Sánchez Alvarado. Dev Biol 2010
211
13

A regulatory program for excretory system regeneration in planarians.
M Lucila Scimone, Mansi Srivastava, George W Bell, Peter W Reddien. Development 2011
98
13

Neoblast specialization in regeneration of the planarian Schmidtea mediterranea.
M Lucila Scimone, Kellie M Kravarik, Sylvain W Lapan, Peter W Reddien. Stem Cell Reports 2014
115
12

Defining the molecular profile of planarian pluripotent stem cells using a combinatorial RNAseq, RNA interference and irradiation approach.
Jordi Solana, Damian Kao, Yuliana Mihaylova, Farah Jaber-Hijazi, Sunir Malla, Ray Wilson, Aziz Aboobaker. Genome Biol 2012
106
12



Spatial reconstruction of single-cell gene expression data.
Rahul Satija, Jeffrey A Farrell, David Gennert, Alexander F Schier, Aviv Regev. Nat Biotechnol 2015
12

The Human Cell Atlas.
Aviv Regev, Sarah A Teichmann, Eric S Lander, Ido Amit, Christophe Benoist, Ewan Birney, Bernd Bodenmiller, Peter Campbell, Piero Carninci, Menna Clatworthy,[...]. Elife 2017
668
12

The single-cell transcriptional landscape of mammalian organogenesis.
Junyue Cao, Malte Spielmann, Xiaojie Qiu, Xingfan Huang, Daniel M Ibrahim, Andrew J Hill, Fan Zhang, Stefan Mundlos, Lena Christiansen, Frank J Steemers,[...]. Nature 2019
444
12

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
12

The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians.
Dasaradhi Palakodeti, Magda Smielewska, Yi-Chien Lu, Gene W Yeo, Brenton R Graveley. RNA 2008
163
11

Double-stranded RNA specifically disrupts gene expression during planarian regeneration.
A Sánchez Alvarado, P A Newmark. Proc Natl Acad Sci U S A 1999
382
11

mRNA-Seq whole-transcriptome analysis of a single cell.
Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B Tuch, Asim Siddiqui,[...]. Nat Methods 2009
11


RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
676
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.