A citation-based method for searching scientific literature

Béatrice Clouet-d'Orval, Manon Batista, Marie Bouvier, Yves Quentin, Gwennaele Fichant, Anita Marchfelder, Lisa-Katharina Maier. FEMS Microbiol Rev 2018
Times Cited: 25







List of co-cited articles
246 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Archaeal β-CASP ribonucleases of the aCPSF1 family are orthologs of the eukaryal CPSF-73 factor.
Duy Khanh Phung, Dana Rinaldi, Petra S Langendijk-Genevaux, Yves Quentin, Agamemnon J Carpousis, Béatrice Clouet-d'Orval. Nucleic Acids Res 2013
28
24


Transcriptome-wide discovery of circular RNAs in Archaea.
Miri Danan, Schraga Schwartz, Sarit Edelheit, Rotem Sorek. Nucleic Acids Res 2012
335
20

An overview of pre-ribosomal RNA processing in eukaryotes.
Anthony K Henras, Célia Plisson-Chastang, Marie-Françoise O'Donohue, Anirban Chakraborty, Pierre-Emmanuel Gleizes. Wiley Interdiscip Rev RNA 2015
290
20

Development of additional selectable markers for the halophilic archaeon Haloferax volcanii based on the leuB and trpA genes.
Thorsten Allers, Hien-Ping Ngo, Moshe Mevarech, Robert G Lloyd. Appl Environ Microbiol 2004
264
20

RNomics in Archaea reveals a further link between splicing of archaeal introns and rRNA processing.
Thean Hock Tang, Timofey S Rozhdestvensky, Béatrice Clouet d'Orval, Marie-Line Bortolin, Harald Huber, Bruno Charpentier, Christiane Branlant, Jean-Pierre Bachellerie, Jürgen Brosius, Alexander Hüttenhofer. Nucleic Acids Res 2002
88
20

Universal RNA-degrading enzymes in Archaea: Prevalence, activities and functions of β-CASP ribonucleases.
Béatrice Clouet-d'Orval, Duy Khanh Phung, Petra S Langendijk-Genevaux, Yves Quentin. Biochimie 2015
12
41

A versatile cis-acting element reporter system to study the function, maturation and stability of ribosomal RNA mutants in archaea.
Michael Jüttner, Matthias Weiß, Nina Ostheimer, Corinna Reglin, Michael Kern, Robert Knüppel, Sébastien Ferreira-Cerca. Nucleic Acids Res 2020
7
71


Translation initiation factor a/eIF2(-gamma) counteracts 5' to 3' mRNA decay in the archaeon Sulfolobus solfataricus.
David Hasenöhrl, Tania Lombo, Vladimir Kaberdin, Paola Londei, Udo Bläsi. Proc Natl Acad Sci U S A 2008
41
16


Distinct activities of several RNase J proteins in methanogenic archaea.
Shiri Levy, Victoria Portnoy, Jasmine Admon, Gadi Schuster. RNA Biol 2011
24
16

Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature.
T D Brock, K M Brock, R T Belly, R L Weiss. Arch Mikrobiol 1972
716
16

WebLogo: a sequence logo generator.
Gavin E Crooks, Gary Hon, John-Marc Chandonia, Steven E Brenner. Genome Res 2004
16

Toward Time-Resolved Analysis of RNA Metabolism in Archaea Using 4-Thiouracil.
Robert Knüppel, Corinna Kuttenberger, Sébastien Ferreira-Cerca. Front Microbiol 2017
11
36


Assembly of bacterial ribosomes.
Zahra Shajani, Michael T Sykes, James R Williamson. Annu Rev Biochem 2011
288
16

Ribonucleoproteins in archaeal pre-rRNA processing and modification.
W S Vincent Yip, Nicholas G Vincent, Susan J Baserga. Archaea 2013
16
25


Structural and functional analysis of the archaeal endonuclease Nob1.
Thomas Veith, Roman Martin, Jan P Wurm, Benjamin L Weis, Elke Duchardt-Ferner, Charlotta Safferthal, Raoul Hennig, Oliver Mirus, Markus T Bohnsack, Jens Wöhnert,[...]. Nucleic Acids Res 2012
50
16

The Non-Coding Regulatory RNA Revolution in Archaea.
Diego Rivera Gelsinger, Jocelyne DiRuggiero. Genes (Basel) 2018
22
18

Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq.
Sebastian Laass, Vivian A Monzon, Jana Kliemt, Matthias Hammelmann, Friedhelm Pfeiffer, Konrad U Förstner, Jörg Soppa. PLoS One 2019
15
26

Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq).
Julia Babski, Karina A Haas, Daniela Näther-Schindler, Friedhelm Pfeiffer, Konrad U Förstner, Matthias Hammelmann, Rolf Hilker, Anke Becker, Cynthia M Sharma, Anita Marchfelder,[...]. BMC Genomics 2016
68
16


Binding of the 5'-Triphosphate End of mRNA to the γ-Subunit of Translation Initiation Factor 2 of the Crenarchaeon Sulfolobus solfataricus.
Valentina Arkhipova, Elena Stolboushkina, Olesya Kravchenko, Vladislav Kljashtorny, Azat Gabdulkhakov, Maria Garber, Stanislav Nikonov, Birgit Märtens, Udo Bläsi, Oleg Nikonov. J Mol Biol 2015
9
33

5'-to-3' exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA.
Nathalie Mathy, Lionel Bénard, Olivier Pellegrini, Roula Daou, Tingyi Wen, Ciarán Condon. Cell 2007
253
12

Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA.
Robert E Sharwood, Michal Halpert, Scott Luro, Gadi Schuster, David B Stern. RNA 2011
47
12

A single-base resolution map of an archaeal transcriptome.
Omri Wurtzel, Rajat Sapra, Feng Chen, Yiwen Zhu, Blake A Simmons, Rotem Sorek. Genome Res 2010
276
12



Factor-dependent archaeal transcription termination.
Julie E Walker, Olivia Luyties, Thomas J Santangelo. Proc Natl Acad Sci U S A 2017
21
14

Global analysis of mRNA decay in Halobacterium salinarum NRC-1 at single-gene resolution using DNA microarrays.
Sonja Hundt, Alexander Zaigler, Christian Lange, Jörg Soppa, Gabriele Klug. J Bacteriol 2007
27
12

Archaea and the origin of eukaryotes.
Laura Eme, Anja Spang, Jonathan Lombard, Courtney W Stairs, Thijs J G Ettema. Nat Rev Microbiol 2017
166
12

Widespread formation of alternative 3' UTR isoforms via transcription termination in archaea.
Daniel Dar, Daniela Prasse, Ruth A Schmitz, Rotem Sorek. Nat Microbiol 2016
38
12

The essential genome of the crenarchaeal model Sulfolobus islandicus.
Changyi Zhang, Alex P R Phillips, Rebecca L Wipfler, Gary J Olsen, Rachel J Whitaker. Nat Commun 2018
34
12

Eukaryotic Ribosome Assembly.
Jochen Baßler, Ed Hurt. Annu Rev Biochem 2019
94
12

Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
John L Woolford, Susan J Baserga. Genetics 2013
431
12

Maturation and degradation of ribosomal RNA in bacteria.
Murray P Deutscher. Prog Mol Biol Transl Sci 2009
114
12

The Vienna RNA websuite.
Andreas R Gruber, Ronny Lorenz, Stephan H Bernhart, Richard Neuböck, Ivo L Hofacker. Nucleic Acids Res 2008
12

Insights into the evolutionary conserved regulation of Rio ATPase activity.
Robert Knüppel, Regitse H Christensen, Fiona C Gray, Dominik Esser, Daniela Strauß, Jan Medenbach, Bettina Siebers, Stuart A MacNeill, Nicole LaRonde, Sébastien Ferreira-Cerca. Nucleic Acids Res 2018
21
14

Circularization restores signal recognition particle RNA functionality in Thermoproteus.
André Plagens, Michael Daume, Julia Wiegel, Lennart Randau. Elife 2015
11
27

Structure and dynamics of bacterial ribosome biogenesis.
Joseph H Davis, James R Williamson. Philos Trans R Soc Lond B Biol Sci 2017
45
12


The evolution of the ribosome biogenesis pathway from a yeast perspective.
Ingo Ebersberger, Stefan Simm, Matthias S Leisegang, Peter Schmitzberger, Oliver Mirus, Arndt von Haeseler, Markus T Bohnsack, Enrico Schleiff. Nucleic Acids Res 2014
56
12


Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
12



mRNA-specific translation regulation by a ribosome-associated ncRNA in Haloferax volcanii.
Leander Wyss, Melanie Waser, Jennifer Gebetsberger, Marek Zywicki, Norbert Polacek. Sci Rep 2018
13
23

Genome-wide mRNA processing in methanogenic archaea reveals post-transcriptional regulation of ribosomal protein synthesis.
Lei Qi, Lei Yue, Deqin Feng, Fengxia Qi, Jie Li, Xiuzhu Dong. Nucleic Acids Res 2017
14
21


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.