A citation-based method for searching scientific literature

Cameron Myhrvold, Catherine A Freije, Jonathan S Gootenberg, Omar O Abudayyeh, Hayden C Metsky, Ann F Durbin, Max J Kellner, Amanda L Tan, Lauren M Paul, Leda A Parham, Kimberly F Garcia, Kayla G Barnes, Bridget Chak, Adriano Mondini, Mauricio L Nogueira, Sharon Isern, Scott F Michael, Ivette Lorenzana, Nathan L Yozwiak, Bronwyn L MacInnis, Irene Bosch, Lee Gehrke, Feng Zhang, Pardis C Sabeti. Science 2018
Times Cited: 503







List of co-cited articles
847 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity.
Janice S Chen, Enbo Ma, Lucas B Harrington, Maria Da Costa, Xinran Tian, Joel M Palefsky, Jennifer A Doudna. Science 2018
992
72

Nucleic acid detection with CRISPR-Cas13a/C2c2.
Jonathan S Gootenberg, Omar O Abudayyeh, Jeong Wook Lee, Patrick Essletzbichler, Aaron J Dy, Julia Joung, Vanessa Verdine, Nina Donghia, Nichole M Daringer, Catherine A Freije,[...]. Science 2017
65

Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6.
Jonathan S Gootenberg, Omar O Abudayyeh, Max J Kellner, Julia Joung, James J Collins, Feng Zhang. Science 2018
790
63

CRISPR-Cas12-based detection of SARS-CoV-2.
James P Broughton, Xianding Deng, Guixia Yu, Clare L Fasching, Venice Servellita, Jasmeet Singh, Xin Miao, Jessica A Streithorst, Andrea Granados, Alicia Sotomayor-Gonzalez,[...]. Nat Biotechnol 2020
979
53

Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing.
Julia Joung, Alim Ladha, Makoto Saito, Nam-Gyun Kim, Ann E Woolley, Michael Segel, Robert P J Barretto, Amardeep Ranu, Rhiannon K Macrae, Guilhem Faure,[...]. N Engl J Med 2020
245
36

SHERLOCK: nucleic acid detection with CRISPR nucleases.
Max J Kellner, Jeremy G Koob, Jonathan S Gootenberg, Omar O Abudayyeh, Feng Zhang. Nat Protoc 2019
357
36

Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2.
Jon Arizti-Sanz, Catherine A Freije, Alexandra C Stanton, Brittany A Petros, Chloe K Boehm, Sameed Siddiqui, Bennett M Shaw, Gordon Adams, Tinna-Solveig F Kosoko-Thoroddsen, Molly E Kemball,[...]. Nat Commun 2020
126
34

Amplification-free detection of SARS-CoV-2 with CRISPR-Cas13a and mobile phone microscopy.
Parinaz Fozouni, Sungmin Son, María Díaz de León Derby, Gavin J Knott, Carley N Gray, Michael V D'Ambrosio, Chunyu Zhao, Neil A Switz, G Renuka Kumar, Stephanie I Stephens,[...]. Cell 2021
223
34

Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components.
Keith Pardee, Alexander A Green, Melissa K Takahashi, Dana Braff, Guillaume Lambert, Jeong Wook Lee, Tom Ferrante, Duo Ma, Nina Donghia, Melina Fan,[...]. Cell 2016
570
29

CRISPR-Cas12a-assisted nucleic acid detection.
Shi-Yuan Li, Qiu-Xiang Cheng, Jing-Man Wang, Xiao-Yan Li, Zi-Long Zhang, Song Gao, Rui-Bing Cao, Guo-Ping Zhao, Jin Wang. Cell Discov 2018
329
29

Massively multiplexed nucleic acid detection with Cas13.
Cheri M Ackerman, Cameron Myhrvold, Sri Gowtham Thakku, Catherine A Freije, Hayden C Metsky, David K Yang, Simon H Ye, Chloe K Boehm, Tinna-Sólveig F Kosoko-Thoroddsen, Jared Kehe,[...]. Nature 2020
195
28

Programmed DNA destruction by miniature CRISPR-Cas14 enzymes.
Lucas B Harrington, David Burstein, Janice S Chen, David Paez-Espino, Enbo Ma, Isaac P Witte, Joshua C Cofsky, Nikos C Kyrpides, Jillian F Banfield, Jennifer A Doudna. Science 2018
335
28

HOLMESv2: A CRISPR-Cas12b-Assisted Platform for Nucleic Acid Detection and DNA Methylation Quantitation.
Linxian Li, Shiyuan Li, Na Wu, Jiacheng Wu, Gang Wang, Guoping Zhao, Jin Wang. ACS Synth Biol 2019
161
27

CRISPR/Cas Systems towards Next-Generation Biosensing.
Yi Li, Shiyuan Li, Jin Wang, Guozhen Liu. Trends Biotechnol 2019
280
26

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector.
Omar O Abudayyeh, Jonathan S Gootenberg, Silvana Konermann, Julia Joung, Ian M Slaymaker, David B T Cox, Sergey Shmakov, Kira S Makarova, Ekaterina Semenova, Leonid Minakhin,[...]. Science 2016
905
26

Ultrasensitive and visual detection of SARS-CoV-2 using all-in-one dual CRISPR-Cas12a assay.
Xiong Ding, Kun Yin, Ziyue Li, Rajesh V Lalla, Enrique Ballesteros, Maroun M Sfeir, Changchun Liu. Nat Commun 2020
217
25

Clinical validation of a Cas13-based assay for the detection of SARS-CoV-2 RNA.
Maturada Patchsung, Krittapas Jantarug, Archiraya Pattama, Kanokpol Aphicho, Surased Suraritdechachai, Piyachat Meesawat, Khomkrit Sappakhaw, Nattawat Leelahakorn, Theerawat Ruenkam, Thanakrit Wongsatit,[...]. Nat Biomed Eng 2020
192
25

A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.
Martin Jinek, Krzysztof Chylinski, Ines Fonfara, Michael Hauer, Jennifer A Doudna, Emmanuelle Charpentier. Science 2012
23

Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection.
Alexandra East-Seletsky, Mitchell R O'Connell, Spencer C Knight, David Burstein, Jamie H D Cate, Robert Tjian, Jennifer A Doudna. Nature 2016
449
21

Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system.
Bernd Zetsche, Jonathan S Gootenberg, Omar O Abudayyeh, Ian M Slaymaker, Kira S Makarova, Patrick Essletzbichler, Sara E Volz, Julia Joung, John van der Oost, Aviv Regev,[...]. Cell 2015
21

CDetection: CRISPR-Cas12b-based DNA detection with sub-attomolar sensitivity and single-base specificity.
Fei Teng, Lu Guo, Tongtong Cui, Xin-Ge Wang, Kai Xu, Qingqin Gao, Qi Zhou, Wei Li. Genome Biol 2019
107
19

CRISPR provides acquired resistance against viruses in prokaryotes.
Rodolphe Barrangou, Christophe Fremaux, Hélène Deveau, Melissa Richards, Patrick Boyaval, Sylvain Moineau, Dennis A Romero, Philippe Horvath. Science 2007
18

DNA detection using recombination proteins.
Olaf Piepenburg, Colin H Williams, Derek L Stemple, Niall A Armes. PLoS Biol 2006
943
18

Loop-mediated isothermal amplification of DNA.
T Notomi, H Okayama, H Masubuchi, T Yonekawa, K Watanabe, N Amino, T Hase. Nucleic Acids Res 2000
18

CRISPR-based diagnostics.
Michael M Kaminski, Omar O Abudayyeh, Jonathan S Gootenberg, Feng Zhang, James J Collins. Nat Biomed Eng 2021
84
21

RNA targeting with CRISPR-Cas13.
Omar O Abudayyeh, Jonathan S Gootenberg, Patrick Essletzbichler, Shuo Han, Julia Joung, Joseph J Belanto, Vanessa Verdine, David B T Cox, Max J Kellner, Aviv Regev,[...]. Nature 2017
787
17

Ultrasensitive CRISPR-based diagnostic for field-applicable detection of Plasmodium species in symptomatic and asymptomatic malaria.
Rose A Lee, Helena De Puig, Peter Q Nguyen, Nicolaas M Angenent-Mari, Nina M Donghia, James P McGee, Jeffrey D Dvorin, Catherine M Klapperich, Nira R Pollock, James J Collins. Proc Natl Acad Sci U S A 2020
51
31

CRISPR-Cas12a has both cis- and trans-cleavage activities on single-stranded DNA.
Shi-Yuan Li, Qiu-Xiang Cheng, Jia-Kun Liu, Xiao-Qun Nie, Guo-Ping Zhao, Jin Wang. Cell Res 2018
268
16

A CRISPR-Cas9-triggered strand displacement amplification method for ultrasensitive DNA detection.
Wenhua Zhou, Li Hu, Liming Ying, Zhen Zhao, Paul K Chu, Xue-Feng Yu. Nat Commun 2018
133
16

Detection of unamplified target genes via CRISPR-Cas9 immobilized on a graphene field-effect transistor.
Reza Hajian, Sarah Balderston, Thanhtra Tran, Tara deBoer, Jessy Etienne, Mandeep Sandhu, Noreen A Wauford, Jing-Yi Chung, Jolie Nokes, Mitre Athaiya,[...]. Nat Biomed Eng 2019
196
15

Ultra-sensitive and high-throughput CRISPR-p owered COVID-19 diagnosis.
Zhen Huang, Di Tian, Yang Liu, Zhen Lin, Christopher J Lyon, Weihua Lai, Dahlene Fusco, Arnaud Drouin, Xiaoming Yin, Tony Hu,[...]. Biosens Bioelectron 2020
173
15


iSCAN: An RT-LAMP-coupled CRISPR-Cas12 module for rapid, sensitive detection of SARS-CoV-2.
Zahir Ali, Rashid Aman, Ahmed Mahas, Gundra Sivakrishna Rao, Muhammad Tehseen, Tin Marsic, Rahul Salunke, Amit K Subudhi, Sharif M Hala, Samir M Hamdan,[...]. Virus Res 2020
112
15

Cas12aVDet: A CRISPR/Cas12a-Based Platform for Rapid and Visual Nucleic Acid Detection.
Bei Wang, Rui Wang, Daqi Wang, Jian Wu, Jixi Li, Jin Wang, Huihui Liu, Yongming Wang. Anal Chem 2019
116
14

opvCRISPR: One-pot visual RT-LAMP-CRISPR platform for SARS-cov-2 detection.
Rui Wang, Chunyan Qian, Yanan Pang, Miaomiao Li, Yu Yang, Haijing Ma, Manying Zhao, Feng Qian, Hang Yu, Zhenping Liu,[...]. Biosens Bioelectron 2021
87
16

Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time.
Kayla G Barnes, Anna E Lachenauer, Adam Nitido, Sameed Siddiqui, Robin Gross, Brett Beitzel, Katherine J Siddle, Catherine A Freije, Bonnie Dighero-Kemp, Samar B Mehta,[...]. Nat Commun 2020
40
35


Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR.
Victor M Corman, Olfert Landt, Marco Kaiser, Richard Molenkamp, Adam Meijer, Daniel Kw Chu, Tobias Bleicker, Sebastian Brünink, Julia Schneider, Marie Luisa Schmidt,[...]. Euro Surveill 2020
13

Next-generation diagnostics with CRISPR.
Daniel S Chertow. Science 2018
119
13

Programmable Inhibition and Detection of RNA Viruses Using Cas13.
Catherine A Freije, Cameron Myhrvold, Chloe K Boehm, Aaron E Lin, Nicole L Welch, Amber Carter, Hayden C Metsky, Cynthia Y Luo, Omar O Abudayyeh, Jonathan S Gootenberg,[...]. Mol Cell 2019
166
13

Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants.
Kira S Makarova, Yuri I Wolf, Jaime Iranzo, Sergey A Shmakov, Omer S Alkhnbashi, Stan J J Brouns, Emmanuelle Charpentier, David Cheng, Daniel H Haft, Philippe Horvath,[...]. Nat Rev Microbiol 2020
528
13

CRISPR/Cas13a-Powered Electrochemical Microfluidic Biosensor for Nucleic Acid Amplification-Free miRNA Diagnostics.
Richard Bruch, Julia Baaske, Claire Chatelle, Mailin Meirich, Sibylle Madlener, Wilfried Weber, Can Dincer, Gerald Anton Urban. Adv Mater 2019
137
13

Nucleic Acid Detection Using CRISPR/Cas Biosensing Technologies.
Rashid Aman, Ahmed Mahas, Magdy Mahfouz. ACS Synth Biol 2020
96
13

Accelerated RNA detection using tandem CRISPR nucleases.
Tina Y Liu, Gavin J Knott, Dylan C J Smock, John J Desmarais, Sungmin Son, Abdul Bhuiya, Shrutee Jakhanwal, Noam Prywes, Shreeya Agrawal, María Díaz de León Derby,[...]. Nat Chem Biol 2021
37
35

Paired Design of dCas9 as a Systematic Platform for the Detection of Featured Nucleic Acid Sequences in Pathogenic Strains.
Yihao Zhang, Long Qian, Weijia Wei, Yu Wang, Beining Wang, Pingping Lin, Wenchao Liu, Luze Xu, Xiang Li, Dongming Liu,[...]. ACS Synth Biol 2017
51
23

Multiplex genome engineering using CRISPR/Cas systems.
Le Cong, F Ann Ran, David Cox, Shuailiang Lin, Robert Barretto, Naomi Habib, Patrick D Hsu, Xuebing Wu, Wenyan Jiang, Luciano A Marraffini,[...]. Science 2013
12

Universal and Naked-Eye Gene Detection Platform Based on the Clustered Regularly Interspaced Short Palindromic Repeats/Cas12a/13a System.
Chaoqun Yuan, Tian Tian, Jian Sun, Menglu Hu, Xusheng Wang, Erhu Xiong, Meng Cheng, Yijuan Bao, Wei Lin, Jieming Jiang,[...]. Anal Chem 2020
86
13

An Ultralocalized Cas13a Assay Enables Universal and Nucleic Acid Amplification-Free Single-Molecule RNA Diagnostics.
Tian Tian, Bowen Shu, Yongzhong Jiang, Miaomiao Ye, Lei Liu, Zhonghui Guo, Zeping Han, Zhang Wang, Xiaoming Zhou. ACS Nano 2021
54
22

Rapid and Fully Microfluidic Ebola Virus Detection with CRISPR-Cas13a.
Peiwu Qin, Myeongkee Park, Kendra J Alfson, Manasi Tamhankar, Ricardo Carrion, Jean L Patterson, Anthony Griffiths, Qian He, Ahmet Yildiz, Richard Mathies,[...]. ACS Sens 2019
93
12

An updated evolutionary classification of CRISPR-Cas systems.
Kira S Makarova, Yuri I Wolf, Omer S Alkhnbashi, Fabrizio Costa, Shiraz A Shah, Sita J Saunders, Rodolphe Barrangou, Stan J J Brouns, Emmanuelle Charpentier, Daniel H Haft,[...]. Nat Rev Microbiol 2015
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.